HG10016280 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016280
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ras-related protein Rab-2A
Location	Chr03: 3946798 .. 3948802 (+)
RNA-Seq Expression	HG10016280
Synteny	HG10016280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTATGCTTACCTATTCAAATACATCGTCATCGGTGATACTGGTACGTCTCTCACCATCCTTAACTACTGAATCATTTTTCCCAACATCGGTTTGCATTTGTGTTTCTTGAATTCTATGGCGTCCTCTGGTTTCTTTTTAATATCATAAACAACCGTTGTTTCGTCTTCAGGAGTTGGGAAATCATGTCTTCTCCTTCAGTTCACGGACAATCGATTTCAGCCGGTTCATGACTTAACTATCGGGGTTGAATTCGGAGCCAGGATGATCACGATTGAGAATAAGCCTATTAAGCTGCAGATTTGGGATACGGTATGTTTCTTTGGTTTCTAATTCGAATTTTCTGTAGCTTGTGTTACTTTAATCGAATACTTATGTAATTCTTTTGGATTCGAGAGAAGGTATATATATTCTTATGGTGCTGTCAACTGATTATACCTTTATTCCTTCTGTTGCGTCACTTTCTTAAGCAGTTTAGACTCTCTGCTTGGGTATGATTTCTTAGGCAACTTGTCAATTGTCAGCCACTCCATCACTTAGTTATCGGAGTATCCAAAAGATGCTGTCGTTCTCCATGTTAATTTATGGTGTCAATTGTCTTTTGTTACAGACGCTTTGCATTTTCCTTTAGTGGGATTTTCGTTCATATTTTAATTGGAACCAAACTTAGCAACTTCCTCCTTGTCCTTACTTTCTTAGAGTGTAACTTTTCTATTGTCTTCTTTATGATATATTTAACAAACAAGTGGGTCCATTCATACTTTAGATCTAATAAAGGTAAGTCACAAGTTGGAGCTATTACTGTTTCTTTTTGCGAGTTTAACGATTTAGGAGCTGGGTATTCGAACCGTCAACCTTTAGAATGGTCGTAACTCATAGACAACTTACCGTGTAGCTAATACTAATTAGCATGTACGTAATTTTTTTTTTTAATTCTTACAAATAGTACGAACAGAAGTTAGTCATTCCTTTTTCTTTATGGCACTTAGCATGAATTTTGACCATGTTGTGGAATCTATGAATAATCATCTCTTGACCTAACCCATGAAAATTGTTGTTGCGTTACCATATGGTCAAGGTTTTTTCCTTTTTCGCAAACATCAGTTTTTATTCAGTTGGGGATAGGATGGCCTCTTTTCTAATTGATAAGGCCGGCTAAGATACTGTTAACACACTTCTCAATTTTAAGGTTTGTATGATTGTAACAGGCCGGCCAAGAGTCATTCAGGTCCATCACGAGGTCCTACTATAGAGGTGCTGCTGGTGCCTTGCTTGTCTATGATATTACCAGGTCTTATTTTGTTTATTTTTCTTCTTGAATGACTTAGTATGCAAATGTGAAGTAATTTTTCACTTCATCTTTAATAAATGCTGGATCTTTATAAGCATCCTTAAATGATTAAAAAGATGGGACTTGTCATAAAGCGGTCCTTTGAAATCTGTGTTGGAAATGGATGTCCTATTGGATTTTTAATGTGAAGTTTTTCATTCTAATGTGCCTTTACCAAGCTGTTTATTTACACGAGAATTATGGTGACTGCGTTATTCAGAAGGGAGACTTTCAATCACTTGGTTAGCTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACAATTATGCTAATTGGTAATAAGAGTGATCTTGCTCATAGAAGGGCTGTGAGCACAGAAGAGGGTGAACAGTTTGCAAAGGAGCATGGTTTAATATTCATGGAGGCATCTGCCAAAACTGCCCAAAATGTTGAAGAGGTGACTACATGAAATATGCTTATGCTGAAATACTTCGAAGCACACTGAGGCTTGTTTGGGTGTAAATTTTTATAGTATGCTAAAACCATTTAAGGAATCCAATCTCTCTAAATGACAAGCACCTCATTTTCAGGCATTCGTAAAGACAGCCGCAACCATATTCAAGAAGATTCAAGATGGAGTATTTGACGTTTCAAATGAGGTTAACATCCGTCTCTATCTTTTCTACTTCGACATACATAGATGA

mRNA sequence

ATGTCTTATGCTTACCTATTCAAATACATCGTCATCGGTGATACTGGAGTTGGGAAATCATGTCTTCTCCTTCAGTTCACGGACAATCGATTTCAGCCGGTTCATGACTTAACTATCGGGGTTGAATTCGGAGCCAGGATGATCACGATTGAGAATAAGCCTATTAAGCTGCAGATTTGGGATACGGCCGGCCAAGAGTCATTCAGGTCCATCACGAGGTCCTACTATAGAGGTGCTGCTGGTGCCTTGCTTGTCTATGATATTACCAGAAGGGAGACTTTCAATCACTTGGTTAGCTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACAATTATGCTAATTGGTAATAAGAGTGATCTTGCTCATAGAAGGGCTGTGAGCACAGAAGAGGGTGAACAGTTTGCAAAGGAGCATGGTTTAATATTCATGGAGGCATCTGCCAAAACTGCCCAAAATGTTGAAGAGGCATTCGTAAAGACAGCCGCAACCATATTCAAGAAGATTCAAGATGGAGTATTTGACGTTTCAAATGAGGTTAACATCCGTCTCTATCTTTTCTACTTCGACATACATAGATGA

Coding sequence (CDS)

ATGTCTTATGCTTACCTATTCAAATACATCGTCATCGGTGATACTGGAGTTGGGAAATCATGTCTTCTCCTTCAGTTCACGGACAATCGATTTCAGCCGGTTCATGACTTAACTATCGGGGTTGAATTCGGAGCCAGGATGATCACGATTGAGAATAAGCCTATTAAGCTGCAGATTTGGGATACGGCCGGCCAAGAGTCATTCAGGTCCATCACGAGGTCCTACTATAGAGGTGCTGCTGGTGCCTTGCTTGTCTATGATATTACCAGAAGGGAGACTTTCAATCACTTGGTTAGCTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACAATTATGCTAATTGGTAATAAGAGTGATCTTGCTCATAGAAGGGCTGTGAGCACAGAAGAGGGTGAACAGTTTGCAAAGGAGCATGGTTTAATATTCATGGAGGCATCTGCCAAAACTGCCCAAAATGTTGAAGAGGCATTCGTAAAGACAGCCGCAACCATATTCAAGAAGATTCAAGATGGAGTATTTGACGTTTCAAATGAGGTTAACATCCGTCTCTATCTTTTCTACTTCGACATACATAGATGA

Protein sequence

MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNKSDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSNEVNIRLYLFYFDIHR

Homology

[Close]

BLAST of HG10016280 vs. NCBI nr
Match: KAG7026687.1 (Ras-related protein RABB1c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 362.1 bits (928), Expect = 3.1e-96
Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 194 MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 253

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK
Sbjct: 254 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 313

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           SDLAHRRAVSTEEGEQFAKEHGL+FMEASAKTAQNVEEAFV+TAATIFKKIQDGVFDVSN
Sbjct: 314 SDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFVRTAATIFKKIQDGVFDVSN 373

Query: 181 E 182
           E
Sbjct: 374 E 374

[Close]

BLAST of HG10016280 vs. NCBI nr
Match: KAG6594717.1 (Ras-related protein RABB1c, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 362.1 bits (928), Expect = 3.1e-96
Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 194 MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 253

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK
Sbjct: 254 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 313

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           SDLAHRRAVSTEEGEQFAKEHGL+FMEASAKTAQNVEEAFV+TAATIFKKIQDGVFDVSN
Sbjct: 314 SDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFVRTAATIFKKIQDGVFDVSN 373

Query: 181 E 182
           E
Sbjct: 374 E 374

[Close]

BLAST of HG10016280 vs. NCBI nr
Match: XP_022926861.1 (ras-related protein RABB1c-like [Cucurbita moschata] >XP_023003336.1 ras-related protein RABB1c-like [Cucurbita maxima] >XP_023518311.1 ras-related protein RABB1c-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.1 bits (928), Expect = 3.1e-96
Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           SDLAHRRAVSTEEGEQFAKEHGL+FMEASAKTAQNVEEAFV+TAATIFKKIQDGVFDVSN
Sbjct: 121 SDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFVRTAATIFKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. NCBI nr
Match: XP_038883522.1 (ras-related protein RABB1c-like [Benincasa hispida])

HSP 1 Score: 361.3 bits (926), Expect = 5.2e-96
Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           +DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFV+TAATIFKKIQDGVFDVSN
Sbjct: 121 NDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVRTAATIFKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. NCBI nr
Match: XP_004134816.1 (ras-related protein RABB1c [Cucumis sativus] >KGN49016.1 hypothetical protein Csa_003624 [Cucumis sativus])

HSP 1 Score: 360.5 bits (924), Expect = 8.9e-96
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLISWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           SDLAHRRAVSTEEGE FAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN
Sbjct: 121 SDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. ExPASy Swiss-Prot
Match: P92963 (Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 6.4e-97
Identity = 174/181 (96.13%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. ExPASy Swiss-Prot
Match: P49103 (Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2)

HSP 1 Score: 347.4 bits (890), Expect = 1.0e-94
Identity = 170/181 (93.92%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DL+HRRAVS EEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTA  I+KKIQDGVFDVSN
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. ExPASy Swiss-Prot
Match: P49104 (Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.0e-94
Identity = 170/181 (93.92%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DL+HRRAVS EEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTA  I+KKIQDGVFDVSN
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. ExPASy Swiss-Prot
Match: Q39570 (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 9.9e-90
Identity = 161/181 (88.95%), Postives = 168/181 (92.82%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMI I+ K IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHAN NMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DL HRRAV+TEEGEQFAKEHGLIF+E SA+TA NVEEAF+ TA  I+KKIQDGVFDVSN
Sbjct: 121 CDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. ExPASy Swiss-Prot
Match: P36863 (GTP-binding protein yptV4 OS=Volvox carteri OX=3067 GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 9.9e-90
Identity = 161/181 (88.95%), Postives = 168/181 (92.82%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMI I+ K IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHAN NMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DL HRRAV+TEEGEQFAKEHGLIF+E SA+TA NVEEAF+ TA  I+KKIQDGVFDVSN
Sbjct: 121 CDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. ExPASy TrEMBL
Match: A0A6J1KNY2 (ras-related protein RABB1c-like OS=Cucurbita maxima OX=3661 GN=LOC111496973 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.5e-96
Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           SDLAHRRAVSTEEGEQFAKEHGL+FMEASAKTAQNVEEAFV+TAATIFKKIQDGVFDVSN
Sbjct: 121 SDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFVRTAATIFKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. ExPASy TrEMBL
Match: A0A6J1EG19 (ras-related protein RABB1c-like OS=Cucurbita moschata OX=3662 GN=LOC111433845 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.5e-96
Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           SDLAHRRAVSTEEGEQFAKEHGL+FMEASAKTAQNVEEAFV+TAATIFKKIQDGVFDVSN
Sbjct: 121 SDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFVRTAATIFKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. ExPASy TrEMBL
Match: A0A0A0KMV2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510340 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.3e-96
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLISWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           SDLAHRRAVSTEEGE FAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN
Sbjct: 121 SDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. ExPASy TrEMBL
Match: A0A5A7SKE6 (Ras-related protein RABB1c-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00430 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 9.6e-96
Identity = 178/181 (98.34%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLISWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           SDLAHRRAV+TEEGE FAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN
Sbjct: 121 SDLAHRRAVTTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. ExPASy TrEMBL
Match: A0A1S3B2A4 (ras-related protein RABB1c-like OS=Cucumis melo OX=3656 GN=LOC103485212 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 9.6e-96
Identity = 178/181 (98.34%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLISWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           SDLAHRRAV+TEEGE FAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN
Sbjct: 121 SDLAHRRAVTTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. TAIR 10
Match: AT4G17170.1 (RAB GTPase homolog B1C )

HSP 1 Score: 354.8 bits (909), Expect = 4.6e-98
Identity = 174/181 (96.13%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. TAIR 10
Match: AT4G35860.1 (GTP-binding 2 )

HSP 1 Score: 328.6 bits (841), Expect = 3.5e-90
Identity = 157/181 (86.74%), Postives = 171/181 (94.48%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSY YLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARM+T++ +PIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHAN NM+IMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAH+RAVS EEG+QFAKEHGL+F+EASA+TAQNVEEAF++TAA I + IQDGVFDVSN
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of HG10016280 vs. TAIR 10
Match: AT4G17160.1 (RAB GTPase homolog B1A )

HSP 1 Score: 314.3 bits (804), Expect = 6.8e-86
Identity = 153/184 (83.15%), Postives = 166/184 (90.22%), Query Frame = 0


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAY FKYI+IGDTGVGKSCLLL+FTD RFQ VHDLTIGVEFGA+ ITI+NKPIKLQIW
Sbjct: 1   MSYAYRFKYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRS+TRSYYRG AG LLVYDITRRETFNHL SWLE+ARQHA+ NMT MLIGNK
Sbjct: 61  DTAGQESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQHASENMTTMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DL  +R VSTEEGEQFA+EHGLIFMEASAKTA NVEEAFV+TAATI+K+IQDGV D +N
Sbjct: 121 CDLEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATIYKRIQDGVVDEAN 180

Query: 181 EVNI 185
           E  I
Sbjct: 181 EPGI 184

[Close]

BLAST of HG10016280 vs. TAIR 10
Match: AT4G35860.2 (GTP-binding 2 )

HSP 1 Score: 238.0 bits (606), Expect = 6.2e-63
Identity = 114/135 (84.44%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 47  MITIENKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQ 106
           M+T++ +PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQ
Sbjct: 1   MVTVDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 60

Query: 107 HANANMTIMLIGNKSDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAAT 166
           HAN NM+IMLIGNK DLAH+RAVS EEG+QFAKEHGL+F+EASA+TAQNVEEAF++TAA 
Sbjct: 61  HANPNMSIMLIGNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAK 120

Query: 167 IFKKIQDGVFDVSNE 182
           I + IQDGVFDVSNE
Sbjct: 121 ILQNIQDGVFDVSNE 135

[Close]

BLAST of HG10016280 vs. TAIR 10
Match: AT5G60860.1 (RAB GTPase homolog A1F )

HSP 1 Score: 192.6 bits (488), Expect = 3.0e-49
Identity = 91/179 (50.84%), Postives = 123/179 (68.72%), Query Frame = 0


Query: 3   YAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS LL +FT N F      TIGVEF  R I +++K +K QIWDT
Sbjct: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDT 69

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNKSD 122
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H +AN+ IM +GNK+D
Sbjct: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMFVGNKAD 129

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSNE 182
           L H RAVSTE+ + FA+     FME SA  + NVE AF +  + I++ +     D+ ++
Sbjct: 130 LRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSRKALDIGDD 188

The following BLAST results are available for this feature:

BLAST of HG10016280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026687.1	3.1e-96	98.90	Ras-related protein RABB1c [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6594717.1	3.1e-96	98.90	Ras-related protein RABB1c, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022926861.1	3.1e-96	98.90	ras-related protein RABB1c-like [Cucurbita moschata] >XP_023003336.1 ras-related...	[more]
XP_038883522.1	5.2e-96	98.90	ras-related protein RABB1c-like [Benincasa hispida]	[more]
XP_004134816.1	8.9e-96	98.90	ras-related protein RABB1c [Cucumis sativus] >KGN49016.1 hypothetical protein Cs...	[more]

BLAST of HG10016280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92963	6.4e-97	96.13	Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1	[more]
P49103	1.0e-94	93.92	Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2	[more]
P49104	1.0e-94	93.92	Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1	[more]
Q39570	9.9e-90	88.95	GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=...	[more]
P36863	9.9e-90	88.95	GTP-binding protein yptV4 OS=Volvox carteri OX=3067 GN=YPTV4 PE=3 SV=1	[more]

BLAST of HG10016280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KNY2	1.5e-96	98.90	ras-related protein RABB1c-like OS=Cucurbita maxima OX=3661 GN=LOC111496973 PE=4...	[more]
A0A6J1EG19	1.5e-96	98.90	ras-related protein RABB1c-like OS=Cucurbita moschata OX=3662 GN=LOC111433845 PE...	[more]
A0A0A0KMV2	4.3e-96	98.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510340 PE=4 SV=1	[more]
A0A5A7SKE6	9.6e-96	98.34	Ras-related protein RABB1c-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3B2A4	9.6e-96	98.34	ras-related protein RABB1c-like OS=Cucumis melo OX=3656 GN=LOC103485212 PE=4 SV=...	[more]

BLAST of HG10016280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17170.1	4.6e-98	96.13	RAB GTPase homolog B1C	[more]
AT4G35860.1	3.5e-90	86.74	GTP-binding 2	[more]
AT4G17160.1	6.8e-86	83.15	RAB GTPase homolog B1A	[more]
AT4G35860.2	6.2e-63	84.44	GTP-binding 2	[more]
AT5G60860.1	3.0e-49	50.84	RAB GTPase homolog A1F	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 145..167 score: 43.87 coord: 7..28 score: 52.15 coord: 48..70 score: 51.31 coord: 110..123 score: 48.89 coord: 30..46 score: 32.76
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 4..170 e-value: 1.5E-35 score: 134.1
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 12..193 e-value: 3.1E-4 score: 11.6
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 7..170 e-value: 4.5E-106 score: 368.4
None	No IPR available	PANTHER	PTHR47979:SF55	RAS-RELATED PROTEIN RABB1C-LIKE	coord: 1..182
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 1..182
None	No IPR available	PROSITE	PS51420	RHO	coord: 1..168 score: 9.749252
None	No IPR available	PROSITE	PS51419	RAB	coord: 2..195 score: 35.54179
None	No IPR available	CDD	cd01866	Rab2	coord: 3..170 e-value: 8.69546E-126 score: 349.799
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 9..170 e-value: 5.5E-12 score: 33.8
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 8..167 e-value: 9.1E-62 score: 207.4
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..195 score: 19.094416
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..183 e-value: 1.1E-70 score: 239.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..185
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 7..161 e-value: 6.8E-33 score: 111.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016280.1	HG10016280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding