HG10016254 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016254
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr03: 3812452 .. 3812745 (+)
RNA-Seq Expression	HG10016254
Synteny	HG10016254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAAATGAGGTCCATGGCTATGGTGAAGAGAGAAGTCCAAAAGGGAAAAGGGGTTGTGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAAGCAGATTACGAGAAGATGGAGGAGTGGAAGCTTGATCTCCTGCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCTATGGGTGCATTTCTATGGCCTGATCAGATTTGA

mRNA sequence

ATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAAATGAGGTCCATGGCTATGGTGAAGAGAGAAGTCCAAAAGGGAAAAGGGGTTGTGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAAGCAGATTACGAGAAGATGGAGGAGTGGAAGCTTGATCTCCTGCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCTATGGGTGCATTTCTATGGCCTGATCAGATTTGA

Coding sequence (CDS)

ATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAAATGAGGTCCATGGCTATGGTGAAGAGAGAAGTCCAAAAGGGAAAAGGGGTTGTGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAAGCAGATTACGAGAAGATGGAGGAGTGGAAGCTTGATCTCCTGCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCTATGGGTGCATTTCTATGGCCTGATCAGATTTGA

Protein sequence

MALRWLLHSTSYLLGNPNEVHGYGEERSPKGKRGCEEICTSGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQI

Homology

[Close]

BLAST of HG10016254 vs. NCBI nr
Match: TYK12988.1 (uncharacterized protein E5676_scaffold255G005850 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 9.7e-43
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MALRWLLHSTSYLLGNPNEVHGYGEERSPKGKRGCEEICTSGFQMPLHYPRYKKADYEKM 60
          M LRWLLHSTSYLLGNPNE H YGEERS  GK+G EEIC SGFQMPLHYPRYKK+DY+ M
Sbjct: 1  MDLRWLLHSTSYLLGNPNEAHAYGEERSSTGKKGYEEICNSGFQMPLHYPRYKKSDYQNM 60

Query: 61 EEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          E WKLDLLLKEYGLSFQGSLEEKRAFAMGAF+WPDQ
Sbjct: 61 EGWKLDLLLKEYGLSFQGSLEEKRAFAMGAFIWPDQ 96

[Close]

BLAST of HG10016254 vs. NCBI nr
Match: XP_011658113.1 (uncharacterized protein LOC105435946 [Cucumis sativus] >KGN49041.1 hypothetical protein Csa_003579 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 2.2e-42
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MALRWLLHSTSYLLGNPNEVHGYGEERSPKGKRGCEEICTSGFQMPLHYPRYKKADYEKM 60
          M LR LLHS SYLLGNPNE H YGEERS KGK+G EE+C SGFQMPLHYPRYKK+DY+KM
Sbjct: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 61 EEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          EEWKLDLLLKEYGLSF+GSLEEKRAFAMGAFLWPDQ
Sbjct: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 96

[Close]

BLAST of HG10016254 vs. NCBI nr
Match: XP_038882557.1 (uncharacterized protein LOC120073788 [Benincasa hispida])

HSP 1 Score: 175.6 bits (444), Expect = 2.0e-40
Identity = 84/96 (87.50%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MALRWLLHSTSYLLGNPNEVHGYGEERSPKGKRGCEEICTSGFQMPLHYPRYKKADYEKM 60
          MALRWLLHSTSYLLGNP E    GEE S KGK G EEICTSGFQMPLHYPRY KADY+KM
Sbjct: 1  MALRWLLHSTSYLLGNPIEAR--GEESSSKGKNGYEEICTSGFQMPLHYPRYNKADYQKM 60

Query: 61 EEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          EEWKLDLLLKEYGLSFQGSLEEKRAFA+GAFLWPDQ
Sbjct: 61 EEWKLDLLLKEYGLSFQGSLEEKRAFAIGAFLWPDQ 94

[Close]

BLAST of HG10016254 vs. NCBI nr
Match: KAG6603827.1 (hypothetical protein SDJN03_04436, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034009.1 hypothetical protein SDJN02_03735, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.5 bits (441), Expect = 4.5e-40
Identity = 83/98 (84.69%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1  MALRWLLHSTSYLLGNPN-EVHGYGEERSPKGKRGCEEICT-SGFQMPLHYPRYKKADYE 60
          MAL WLL+S + LLGNPN EVHGYGEERS KG++GCEEICT SGFQMPLHYP Y KADY+
Sbjct: 1  MALGWLLYSAARLLGNPNHEVHGYGEERSSKGEKGCEEICTSSGFQMPLHYPHYTKADYQ 60

Query: 61 KMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          KMEEWK+D LLKEYGLSFQGSLEEKRAFAMGAFLWPDQ
Sbjct: 61 KMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 98

[Close]

BLAST of HG10016254 vs. NCBI nr
Match: KAG6594704.1 (hypothetical protein SDJN03_11257, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026671.1 hypothetical protein SDJN02_10674, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.2 bits (404), Expect = 8.8e-36
Identity = 76/96 (79.17%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1  MALRWLLHSTSYLLGNPNEVHGYGEERSPKGKRGCEEICTSGFQMPLHYPRYKKADYEKM 60
          M L+WLLHSTS LLGNP EV       S +GKRGCEEIC SGFQMPLHYPRY KADY+KM
Sbjct: 1  MPLKWLLHSTSCLLGNPIEV-----PISSQGKRGCEEICNSGFQMPLHYPRYNKADYQKM 60

Query: 61 EEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          E+WK+DLLLKEYGLSF GSLEEKRAFAMGAF WPDQ
Sbjct: 61 EDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQ 91

[Close]

BLAST of HG10016254 vs. ExPASy TrEMBL
Match: A0A5D3CP92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005850 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.7e-43
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MALRWLLHSTSYLLGNPNEVHGYGEERSPKGKRGCEEICTSGFQMPLHYPRYKKADYEKM 60
          M LRWLLHSTSYLLGNPNE H YGEERS  GK+G EEIC SGFQMPLHYPRYKK+DY+ M
Sbjct: 1  MDLRWLLHSTSYLLGNPNEAHAYGEERSSTGKKGYEEICNSGFQMPLHYPRYKKSDYQNM 60

Query: 61 EEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          E WKLDLLLKEYGLSFQGSLEEKRAFAMGAF+WPDQ
Sbjct: 61 EGWKLDLLLKEYGLSFQGSLEEKRAFAMGAFIWPDQ 96

[Close]

BLAST of HG10016254 vs. ExPASy TrEMBL
Match: A0A0A0KMW8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511080 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-42
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MALRWLLHSTSYLLGNPNEVHGYGEERSPKGKRGCEEICTSGFQMPLHYPRYKKADYEKM 60
          M LR LLHS SYLLGNPNE H YGEERS KGK+G EE+C SGFQMPLHYPRYKK+DY+KM
Sbjct: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 61 EEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          EEWKLDLLLKEYGLSF+GSLEEKRAFAMGAFLWPDQ
Sbjct: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 96

[Close]

BLAST of HG10016254 vs. ExPASy TrEMBL
Match: A0A6J1BUU9 (uncharacterized protein LOC111005569 OS=Momordica charantia OX=3673 GN=LOC111005569 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.1e-34
Identity = 75/106 (70.75%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 1   MALRWLLHSTSYLLGNPNEVHGYG--------EERSPKGKRGCEEIC--TSGFQMPLHYP 60
           MAL+WLLHS  YLL   NEVH           EER PKGK+GCEEIC   SGFQMPLHYP
Sbjct: 3   MALKWLLHSACYLL---NEVHACANGGVKTSDEERIPKGKKGCEEICNSASGFQMPLHYP 62

Query: 61  RYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
           RY KADY+KMEEW++DLLL +YG+ F+GSLEEKRAFAMGAFLWPDQ
Sbjct: 63  RYNKADYQKMEEWEVDLLLNQYGMGFEGSLEEKRAFAMGAFLWPDQ 105

[Close]

BLAST of HG10016254 vs. ExPASy TrEMBL
Match: A0A7J0EYW1 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_08g0000310 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.0e-29
Identity = 67/107 (62.62%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 1   MALRWLLHST-SYLLGNPNEVHGYGEERS---------PKGKRGCEEICTSGFQMPLHYP 60
           MALRWLLHS  + +LG PNE     + +S         PK    C ++C SGFQMPLHYP
Sbjct: 1   MALRWLLHSAYAIVLGYPNEAAVQKQVKSLTFQSDQNLPKSAGTCVQMCCSGFQMPLHYP 60

Query: 61  RYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQI 98
           RYKKADYEKMEEWK+D++L+EYGL F GSL+EKRAFAMG FLWPDQ+
Sbjct: 61  RYKKADYEKMEEWKVDMVLQEYGLRFMGSLDEKRAFAMGVFLWPDQL 107

[Close]

BLAST of HG10016254 vs. ExPASy TrEMBL
Match: A0A2N9EZP3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8195 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.1e-27
Identity = 61/99 (61.62%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1  MALRWLLHSTSYLLGNPNEVHGYGEERS---PKGKRGCEEICTSGFQMPLHYPRYKKADY 60
          MAL WL+HS  ++LG P + +     +S   P G    +E+  SGFQMPLHYPRY KADY
Sbjct: 1  MALSWLIHSACHVLGTPKDTNIQCHVKSLKVPNGGLPSKEMNPSGFQMPLHYPRYNKADY 60

Query: 61 EKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          EKMEEWK+DLLLK+YGL+F+G+L+EKRA+AMGAFLWP Q
Sbjct: 61 EKMEEWKVDLLLKQYGLNFKGNLDEKRAYAMGAFLWPGQ 99

[Close]

BLAST of HG10016254 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 7.2e-20
Identity = 39/57 (68.42%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 41  SGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQI 98
           SGFQ+PLHYP+Y K+DYE M++ +LDLLLK+YG SF+GSLE+KR FA+ +FLWPDQ+
Sbjct: 45  SGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQL 101

[Close]

BLAST of HG10016254 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-17
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 32 KRGCEEICTSGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGL--SFQGSLEEKRAFAMG 91
          K G  +  +SGF+MPLHYPRY K DYE+MEEW+LDLLL EYGL      +L EKRAFA+ 
Sbjct: 25 KNGAVKAPSSGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAID 84

Query: 92 AFLWP 95
           F+WP
Sbjct: 85 TFIWP 89

[Close]

BLAST of HG10016254 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-16
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 40 TSGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          +S FQ+PLHYP+Y K+DYEKM EW+LD LL+EYGL   G   EKR FA+GAFLW  +
Sbjct: 42 SSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSSE 98

[Close]

BLAST of HG10016254 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 3.1e-15
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 41 SGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLW 94
          S F+MPLHYPRY K DY+ M EWKLD +L +YGLS  G L  KR FA+GAFLW
Sbjct: 30 SVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW 82

[Close]

BLAST of HG10016254 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 41  SGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQ-GSLEEKRAFAMGAFLW 94
           S FQMPL YP Y K  Y+ M E +LD LLK YGL    G+L  K+ FA+GAFLW
Sbjct: 55  SSFQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

The following BLAST results are available for this feature:

BLAST of HG10016254 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK12988.1	9.7e-43	86.46	uncharacterized protein E5676_scaffold255G005850 [Cucumis melo var. makuwa]	[more]
XP_011658113.1	2.2e-42	86.46	uncharacterized protein LOC105435946 [Cucumis sativus] >KGN49041.1 hypothetical ...	[more]
XP_038882557.1	2.0e-40	87.50	uncharacterized protein LOC120073788 [Benincasa hispida]	[more]
KAG6603827.1	4.5e-40	84.69	hypothetical protein SDJN03_04436, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6594704.1	8.8e-36	79.17	hypothetical protein SDJN03_11257, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10016254 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10016254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CP92	4.7e-43	86.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KMW8	1.0e-42	86.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511080 PE=4 SV=1	[more]
A0A6J1BUU9	3.1e-34	70.75	uncharacterized protein LOC111005569 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A7J0EYW1	1.0e-29	62.62	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_08g0000310 PE=4 SV=1	[more]
A0A2N9EZP3	2.1e-27	61.62	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8195 PE=4 SV=1	[more]

BLAST of HG10016254 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55620.1	7.2e-20	68.42	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G09950.1	1.2e-17	61.54	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41761.1	1.7e-16	63.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G55570.1	3.1e-15	66.04	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G11405.1	1.2e-09	57.41	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513:SF2	SUBFAMILY NOT NAMED	coord: 1..96
None	No IPR available	PANTHER	PTHR33513	OS06G0523300 PROTEIN	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016254.1	HG10016254.1	mRNA