HG10016253 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016253
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	TPD1 protein homolog 1-like
Location	Chr03: 3808028 .. 3809008 (-)
RNA-Seq Expression	HG10016253
Synteny	HG10016253

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACATCTCCACCTCACTCTGCTTTTACAACTCTACCACTCCATGTTTAGCTGTACCCTCTGTTTTCTCATTCCTTCTCTTTTCTTTCTTCATCGAAATCGGCACCGACTTCATAGTACTTAGTCAACCAGGTACCAGACAAGAAGACACTACTGTTTGACTGATCGAAGCCATTTTGGTTACACGTGTGCTCACCCCATTCCTTTTAGATTCCTTGTAGCCTCTTTGTAAATGCTTTCATATACTCCCCATTTTAAGCTAATTCAGAAAGAAAGTGAACACAGCAATGAAAGGTGGTGCTTTTCACAGATTCTGCTTCTGTTTTCTCCTCACATGTTTTCTTGGTAATGGTAACTCTTCTTTTATTTGATCTATTATCTATAATCTATCATGCCTCTGCATCTTCTTGCCCATCTGATTTACATTTACACCCACCACTTTCTTTTTTTTCTTTCTTTTTTGGTGGAATTCAGAATTCAAGTTGGTTCATTTGAGAGTTGTTCAGGTAGCTGCAAGAGAGAAAAGAAATGGGATTTCTGGGATGTCGCTTCAATCTTCTAATAGTGGTAAGAAACTCATTCTTACTACAGAAATCAAAATGTTGTTCTTTACATATATACCATGGATCTCATTCTAAATAGGTAAAGAGATGAATCGCATTGGTTCAGAATGTTCAAAAGACGATGTCATTATATTTCAAGGCCAAACAACTCCACTTCCGGATGGGATTCCAACATATATGGTTCAGATCTTGAATTCATGTGCTTCAGACTGCAGCATCTCCAACATTCACGTCAAATGTGAGTGGTTCAGCTCAGCCAGATTGGTGAATCCAAGAATTTTTAGGCGAGTCACTTATGATGACTGCCTTGTCAACGATGGCCAAGCTCTTGGTCCTGGTCAAACTCTGTCTTTTCAATATGCTAATACTTTCCCTTACCCTCTTTCTGTAGCTTCTGTAACTTGTTCTTCTTAA

mRNA sequence

ATGGCGGACATCTCCACCTCACTCTGCTTTTACAACTCTACCACTCCATGTTTAGCTGTACCCTCTGTTTTCTCATTCCTTCTCTTTTCTTTCTTCATCGAAATCGGCACCGACTTCATAGTACTTAGTCAACCAGAATTCAAGTTGGTTCATTTGAGAGTTGTTCAGGTAGCTGCAAGAGAGAAAAGAAATGGGATTTCTGGGATGTCGCTTCAATCTTCTAATAGTGGTAAAGAGATGAATCGCATTGGTTCAGAATGTTCAAAAGACGATGTCATTATATTTCAAGGCCAAACAACTCCACTTCCGGATGGGATTCCAACATATATGGTTCAGATCTTGAATTCATGTGCTTCAGACTGCAGCATCTCCAACATTCACGTCAAATGTGAGTGGTTCAGCTCAGCCAGATTGGTGAATCCAAGAATTTTTAGGCGAGTCACTTATGATGACTGCCTTGTCAACGATGGCCAAGCTCTTGGTCCTGGTCAAACTCTGTCTTTTCAATATGCTAATACTTTCCCTTACCCTCTTTCTGTAGCTTCTGTAACTTGTTCTTCTTAA

Coding sequence (CDS)

ATGGCGGACATCTCCACCTCACTCTGCTTTTACAACTCTACCACTCCATGTTTAGCTGTACCCTCTGTTTTCTCATTCCTTCTCTTTTCTTTCTTCATCGAAATCGGCACCGACTTCATAGTACTTAGTCAACCAGAATTCAAGTTGGTTCATTTGAGAGTTGTTCAGGTAGCTGCAAGAGAGAAAAGAAATGGGATTTCTGGGATGTCGCTTCAATCTTCTAATAGTGGTAAAGAGATGAATCGCATTGGTTCAGAATGTTCAAAAGACGATGTCATTATATTTCAAGGCCAAACAACTCCACTTCCGGATGGGATTCCAACATATATGGTTCAGATCTTGAATTCATGTGCTTCAGACTGCAGCATCTCCAACATTCACGTCAAATGTGAGTGGTTCAGCTCAGCCAGATTGGTGAATCCAAGAATTTTTAGGCGAGTCACTTATGATGACTGCCTTGTCAACGATGGCCAAGCTCTTGGTCCTGGTCAAACTCTGTCTTTTCAATATGCTAATACTTTCCCTTACCCTCTTTCTGTAGCTTCTGTAACTTGTTCTTCTTAA

Protein sequence

MADISTSLCFYNSTTPCLAVPSVFSFLLFSFFIEIGTDFIVLSQPEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS

Homology

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BLAST of HG10016253 vs. NCBI nr
Match: XP_038880860.1 (TPD1 protein homolog 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 282.7 bits (722), Expect = 2.3e-72
Identity = 142/171 (83.04%), Postives = 154/171 (90.06%), Query Frame = 0


Query: 17  CLAVPSVFSFLLFSFFIEIGTDFIVLSQPEFKLVHLRVVQVAAREKRNGISGMSLQSSNS 76
           C+ +P  F+F+  +FF      F +L   EFKLVHLRVVQ AAREKRNGISGMSLQSSNS
Sbjct: 17  CIFLPVWFTFIPTNFF------FSLLWNSEFKLVHLRVVQAAAREKRNGISGMSLQSSNS 76

Query: 77  GKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSA 136
           GKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTY+VQILNSCASDCSISNIH+KC WFSSA
Sbjct: 77  GKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYIVQILNSCASDCSISNIHMKCGWFSSA 136

Query: 137 RLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS 188
           RLVNPRIFRRV+YDDCLV++GQALGPGQTLSFQYANTFPYPLSV+SVTCSS
Sbjct: 137 RLVNPRIFRRVSYDDCLVDNGQALGPGQTLSFQYANTFPYPLSVSSVTCSS 181

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BLAST of HG10016253 vs. NCBI nr
Match: XP_038880861.1 (TPD1 protein homolog 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 276.9 bits (707), Expect = 1.2e-70
Identity = 135/149 (90.60%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 39  FIVLSQPEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQ 98
           F++    EFKLVHLRVVQ AAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQ
Sbjct: 13  FLLACFLEFKLVHLRVVQAAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQ 72

Query: 99  TTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQ 158
           TTPLPDGIPTY+VQILNSCASDCSISNIH+KC WFSSARLVNPRIFRRV+YDDCLV++GQ
Sbjct: 73  TTPLPDGIPTYIVQILNSCASDCSISNIHMKCGWFSSARLVNPRIFRRVSYDDCLVDNGQ 132

Query: 159 ALGPGQTLSFQYANTFPYPLSVASVTCSS 188
           ALGPGQTLSFQYANTFPYPLSV+SVTCSS
Sbjct: 133 ALGPGQTLSFQYANTFPYPLSVSSVTCSS 161

[Close]

BLAST of HG10016253 vs. NCBI nr
Match: TYK12989.1 (TPD1 protein-like protein 1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 124/141 (87.94%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 46  EFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDG 105
           EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGSECSK+D+IIFQG  TPLP G
Sbjct: 21  EFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSECSKEDIIIFQGPATPLPGG 80

Query: 106 IPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQT 165
           IPTY+VQILNSCASDCSISNIHVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+T
Sbjct: 81  IPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSYDDCLVNDGRALGPGRT 140

Query: 166 LSFQYANTFPYPLSVASVTCS 187
           LSFQYANTFPYPLSV+S TCS
Sbjct: 141 LSFQYANTFPYPLSVSSATCS 161

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BLAST of HG10016253 vs. NCBI nr
Match: XP_004134986.1 (TPD1 protein homolog 1 isoform X2 [Cucumis sativus] >KGN49042.1 hypothetical protein Csa_004146 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 124/142 (87.32%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 46  EFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDG 105
           EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGS C+KDD+IIFQG  TPLP G
Sbjct: 23  EFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSRCAKDDIIIFQGPATPLPGG 82

Query: 106 IPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQT 165
           IPTY+VQILNSCASDCSISNIHVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+T
Sbjct: 83  IPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSYDDCLVNDGRALGPGRT 142

Query: 166 LSFQYANTFPYPLSVASVTCSS 188
           LSFQYANTFPYPLSV+S TCSS
Sbjct: 143 LSFQYANTFPYPLSVSSATCSS 164

[Close]

BLAST of HG10016253 vs. NCBI nr
Match: XP_011658115.1 (TPD1 protein homolog 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 124/142 (87.32%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 46  EFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDG 105
           EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGS C+KDD+IIFQG  TPLP G
Sbjct: 21  EFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSRCAKDDIIIFQGPATPLPGG 80

Query: 106 IPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQT 165
           IPTY+VQILNSCASDCSISNIHVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+T
Sbjct: 81  IPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSYDDCLVNDGRALGPGRT 140

Query: 166 LSFQYANTFPYPLSVASVTCSS 188
           LSFQYANTFPYPLSV+S TCSS
Sbjct: 141 LSFQYANTFPYPLSVSSATCSS 162

[Close]

BLAST of HG10016253 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-46
Identity = 84/129 (65.12%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 57  VAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNS 116
           V+  E R  +S   L S + G   NRIG +CSKDD+++FQG T PLP G+P+Y V+I NS
Sbjct: 50  VSINENRTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNS 109

Query: 117 CASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPY 176
           C SDC+I+ IHV C WFSS RLVNPR+FRR+ YDDCLVNDGQ LGPGQ+LSFQYAN+F Y
Sbjct: 110 CVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSY 169

Query: 177 PLSVASVTC 186
           PLSVASV+C
Sbjct: 170 PLSVASVSC 178

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BLAST of HG10016253 vs. ExPASy Swiss-Prot
Match: Q6TLJ2 (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.0e-35
Identity = 70/123 (56.91%), Postives = 87/123 (70.73%), Query Frame = 0


Query: 69  MSLQSSNSGK-----EMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSI 128
           M L S  +GK     E  RIG +C   D+++ Q  T P+P+GIP YMV+I N C S C I
Sbjct: 54  MLLLSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCII 113

Query: 129 SNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASV 187
           S IH+ C WFSSA+L+NPR+F+R+ YDDCLVN+G+ L  G TLSF YANTFPY LSVA V
Sbjct: 114 SRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFV 173

[Close]

BLAST of HG10016253 vs. ExPASy Swiss-Prot
Match: Q2QR54 (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.2e-30
Identity = 60/127 (47.24%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 66  ISGMSLQSSNSGKEMNRIGSECS-KDDVIIFQGQTTPLPDGIPTYMVQILNSCA------ 125
           +SG        G    R+   C+  DD+ I+QG+ TPLP G+P Y V ++N CA      
Sbjct: 93  VSGSGGGGGGDGVRTRRVDDGCAGADDIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGD 152

Query: 126 SDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPL 185
            +C+I+ IHV+C WFSS  LV+PR+FRR+ +DDCL+NDG+ L  G+T+SF+Y N+FPY L
Sbjct: 153 EECAIAGIHVRCGWFSSVSLVDPRVFRRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKL 212

[Close]

BLAST of HG10016253 vs. ExPASy Swiss-Prot
Match: Q8S6P9 (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-24
Identity = 52/115 (45.22%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 73  SSNSGKE-MNRIGSE-CSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKC 132
           S N G+  M R+  + CS+ +V+++Q     LP GIPTY V+I+N C + C++ ++H+ C
Sbjct: 55  SPNGGRHWMQRMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVCTA-CTVYDVHISC 114

Query: 133 EWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTC 186
             F+SA LV+P  F+R+ ++DCLV  G  LGP + +SFQY+N+F YPL+VA+V C
Sbjct: 115 GEFASAELVDPSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

[Close]

BLAST of HG10016253 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.7e-07
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 109 YMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYD--DCLVNDGQALGPGQTL 168
           + V+++N C   C I N+ +KC+ F  + LV+P   R ++    +C+VNDG  L P QTL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 169 SFQYANTFPYPL 179
           SF Y+NT  + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]

BLAST of HG10016253 vs. ExPASy TrEMBL
Match: A0A5D3CRM1 (TPD1 protein-like protein 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005860 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.8e-66
Identity = 124/141 (87.94%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 46  EFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDG 105
           EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGSECSK+D+IIFQG  TPLP G
Sbjct: 21  EFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSECSKEDIIIFQGPATPLPGG 80

Query: 106 IPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQT 165
           IPTY+VQILNSCASDCSISNIHVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+T
Sbjct: 81  IPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSYDDCLVNDGRALGPGRT 140

Query: 166 LSFQYANTFPYPLSVASVTCS 187
           LSFQYANTFPYPLSV+S TCS
Sbjct: 141 LSFQYANTFPYPLSVSSATCS 161

[Close]

BLAST of HG10016253 vs. ExPASy TrEMBL
Match: A0A0A0KL27 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511090 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.8e-66
Identity = 124/142 (87.32%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 46  EFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDG 105
           EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGS C+KDD+IIFQG  TPLP G
Sbjct: 23  EFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSRCAKDDIIIFQGPATPLPGG 82

Query: 106 IPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQT 165
           IPTY+VQILNSCASDCSISNIHVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+T
Sbjct: 83  IPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSYDDCLVNDGRALGPGRT 142

Query: 166 LSFQYANTFPYPLSVASVTCSS 188
           LSFQYANTFPYPLSV+S TCSS
Sbjct: 143 LSFQYANTFPYPLSVSSATCSS 164

[Close]

BLAST of HG10016253 vs. ExPASy TrEMBL
Match: A0A1S3AZV4 (TPD1 protein homolog 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484668 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.3e-65
Identity = 124/141 (87.94%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 46  EFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDG 105
           EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGSECSK D+IIFQG  TPLP G
Sbjct: 23  EFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSECSKKDIIIFQGPATPLPGG 82

Query: 106 IPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQT 165
           IPTY+VQILNSCASDCSISNIHVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+T
Sbjct: 83  IPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSYDDCLVNDGRALGPGRT 142

Query: 166 LSFQYANTFPYPLSVASVTCS 187
           LSFQYANTFPYPLSV+S TCS
Sbjct: 143 LSFQYANTFPYPLSVSSATCS 163

[Close]

BLAST of HG10016253 vs. ExPASy TrEMBL
Match: A0A1S3B0B6 (TPD1 protein homolog 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484668 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.3e-65
Identity = 124/141 (87.94%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 46  EFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDG 105
           EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGSECSK D+IIFQG  TPLP G
Sbjct: 21  EFKLVHLRVLQAAARENRNGISSMSLQSSNSGKEMNRIGSECSKKDIIIFQGPATPLPGG 80

Query: 106 IPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQT 165
           IPTY+VQILNSCASDCSISNIHVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+T
Sbjct: 81  IPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSYDDCLVNDGRALGPGRT 140

Query: 166 LSFQYANTFPYPLSVASVTCS 187
           LSFQYANTFPYPLSV+S TCS
Sbjct: 141 LSFQYANTFPYPLSVSSATCS 161

[Close]

BLAST of HG10016253 vs. ExPASy TrEMBL
Match: A0A6J1GDB1 (TPD1 protein homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111453150 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.3e-61
Identity = 120/162 (74.07%), Postives = 136/162 (83.95%), Query Frame = 0


Query: 26  FLLFSFFIEIGTDFIVLSQPEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGS 85
           FL FS F+             FKLV L VVQ AAREK +GIS MSLQSS +G+ MNR+GS
Sbjct: 10  FLCFSLFL------------AFKLVRLSVVQAAAREKNSGISWMSLQSSKTGRGMNRVGS 69

Query: 86  ECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFR 145
           ECSKD+V++FQGQT PLPDGIP+++VQILNSC+S CSISNIH+KC WFSSARLVNPRIFR
Sbjct: 70  ECSKDEVVVFQGQTAPLPDGIPSFIVQILNSCSSGCSISNIHMKCGWFSSARLVNPRIFR 129

Query: 146 RVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS 188
           RV YDDCL+NDG+ALGPGQTLSFQYANTFPYPLSV+SVTCSS
Sbjct: 130 RVKYDDCLINDGKALGPGQTLSFQYANTFPYPLSVSSVTCSS 159

[Close]

BLAST of HG10016253 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 187.6 bits (475), Expect = 9.2e-48
Identity = 84/129 (65.12%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 57  VAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNS 116
           V+  E R  +S   L S + G   NRIG +CSKDD+++FQG T PLP G+P+Y V+I NS
Sbjct: 50  VSINENRTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNS 109

Query: 117 CASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPY 176
           C SDC+I+ IHV C WFSS RLVNPR+FRR+ YDDCLVNDGQ LGPGQ+LSFQYAN+F Y
Sbjct: 110 CVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSY 169

Query: 177 PLSVASVTC 186
           PLSVASV+C
Sbjct: 170 PLSVASVSC 178

[Close]

BLAST of HG10016253 vs. TAIR 10
Match: AT4G24972.1 (tapetum determinant 1 )

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-36
Identity = 70/123 (56.91%), Postives = 87/123 (70.73%), Query Frame = 0


Query: 69  MSLQSSNSGK-----EMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSI 128
           M L S  +GK     E  RIG +C   D+++ Q  T P+P+GIP YMV+I N C S C I
Sbjct: 54  MLLLSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCII 113

Query: 129 SNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASV 187
           S IH+ C WFSSA+L+NPR+F+R+ YDDCLVN+G+ L  G TLSF YANTFPY LSVA V
Sbjct: 114 SRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFV 173

[Close]

BLAST of HG10016253 vs. TAIR 10
Match: AT1G05835.1 (PHD finger protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-08
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 109 YMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYD--DCLVNDGQALGPGQTL 168
           + V+++N C   C I N+ +KC+ F  + LV+P   R ++    +C+VNDG  L P QTL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 169 SFQYANTFPYPL 179
           SF Y+NT  + L
Sbjct: 108 SFNYSNTHQFAL 117

The following BLAST results are available for this feature:

BLAST of HG10016253 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880860.1	2.3e-72	83.04	TPD1 protein homolog 1-like isoform X1 [Benincasa hispida]	[more]
XP_038880861.1	1.2e-70	90.60	TPD1 protein homolog 1-like isoform X2 [Benincasa hispida]	[more]
TYK12989.1	1.2e-65	87.94	TPD1 protein-like protein 1-like isoform X2 [Cucumis melo var. makuwa]	[more]
XP_004134986.1	1.2e-65	87.32	TPD1 protein homolog 1 isoform X2 [Cucumis sativus] >KGN49042.1 hypothetical pro...	[more]
XP_011658115.1	1.2e-65	87.32	TPD1 protein homolog 1 isoform X3 [Cucumis sativus]	[more]

BLAST of HG10016253 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3T1	1.3e-46	65.12	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
Q6TLJ2	3.0e-35	56.91	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1	[more]
Q2QR54	2.2e-30	47.24	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S...	[more]
Q8S6P9	2.4e-24	45.22	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S...	[more]
A8MS78	2.7e-07	40.28	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of HG10016253 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRM1	5.8e-66	87.94	TPD1 protein-like protein 1-like isoform X2 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0KL27	5.8e-66	87.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511090 PE=4 SV=1	[more]
A0A1S3AZV4	1.3e-65	87.94	TPD1 protein homolog 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484668 P...	[more]
A0A1S3B0B6	1.3e-65	87.94	TPD1 protein homolog 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484668 P...	[more]
A0A6J1GDB1	4.3e-61	74.07	TPD1 protein homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111453150 PE=4 S...	[more]

BLAST of HG10016253 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32583.1	9.2e-48	65.12	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G24972.1	2.1e-36	56.91	tapetum determinant 1	[more]
AT1G05835.1	1.9e-08	40.28	PHD finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 26..186
None	No IPR available	PANTHER	PTHR33184:SF67	PROTEIN TAPETUM DETERMINANT 1	coord: 26..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016253.1	HG10016253.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001709	cell fate determination
biological_process	GO:0009408	response to heat
cellular_component	GO:0016021	integral component of membrane