HG10016247 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10016247
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr03: 3778805 .. 3778969 (+)
RNA-Seq ExpressionHG10016247
SyntenyHG10016247
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGAACCGTGCTATGTTCGTATATTGCCGGAGTTAACGTCACAAAGAAATTCCCGTCGATGTCGATGGCTCCTCTTTGGAGTCTCCATCGGCTGCTGGTATCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCCTTTACTTCTTGGGACTGGCCATGA

mRNA sequence

ATGGAGCGAACCGTGCTATGTTCGTATATTGCCGGAGTTAACGTCACAAAGAAATTCCCGTCGATGTCGATGGCTCCTCTTTGGAGTCTCCATCGGCTGCTGGTATCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCCTTTACTTCTTGGGACTGGCCATGA

Coding sequence (CDS)

ATGGAGCGAACCGTGCTATGTTCGTATATTGCCGGAGTTAACGTCACAAAGAAATTCCCGTCGATGTCGATGGCTCCTCTTTGGAGTCTCCATCGGCTGCTGGTATCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCCTTTACTTCTTGGGACTGGCCATGA

Protein sequence

MERTVLCSYIAGVNVTKKFPSMSMAPLWSLHRLLVSYSIALWSSVAAFTSWDWP
Homology
BLAST of HG10016247 vs. NCBI nr
Match: KAE9612675.1 (hypothetical protein Lalb_Chr06g0175591 [Lupinus albus])

HSP 1 Score: 53.9 bits (128), Expect = 4.9e-04
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 2  ERTVLCSYIAGVNVTKKFPSMSMAP--LWSLHRLLVSYSIALWSSVAAFTSWDWP 55
          E+T+LC YI+ V V  +   +  AP  L +   L VSYSIALWS VAAFT WDWP
Sbjct: 19 EQTILCLYISQVTVLYQCFLVLTAPPSLVASPPLAVSYSIALWSGVAAFTIWDWP 73

BLAST of HG10016247 vs. ExPASy TrEMBL
Match: A0A6A4QEE9 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr06g0175591 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-04
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 2  ERTVLCSYIAGVNVTKKFPSMSMAP--LWSLHRLLVSYSIALWSSVAAFTSWDWP 55
          E+T+LC YI+ V V  +   +  AP  L +   L VSYSIALWS VAAFT WDWP
Sbjct: 19 EQTILCLYISQVTVLYQCFLVLTAPPSLVASPPLAVSYSIALWSGVAAFTIWDWP 73

BLAST of HG10016247 vs. ExPASy TrEMBL
Match: A0A0A0KQD9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G140470 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.3e-04
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 6   LCSYIAGVNVTKKFPSMSMAPLWSLHRLLV 36
           LCSYI GVNVTKK  SM MAP+W+LHRLLV
Sbjct: 86  LCSYITGVNVTKKLLSMLMAPVWNLHRLLV 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE9612675.14.9e-0454.55hypothetical protein Lalb_Chr06g0175591 [Lupinus albus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6A4QEE92.4e-0454.55Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr06g0175591 PE=4 SV=1[more]
A0A0A0KQD95.3e-0480.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G140470 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10016247.1HG10016247.1mRNA