HG10016233 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10016233
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein RALF-like 7
LocationChr03: 3692453 .. 3692689 (-)
RNA-Seq ExpressionHG10016233
SyntenyHG10016233
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCTCCATCAAAACATTGACCATTTTTATAATTATGATGATCGTTTGCTCATTGATGGTAAACCCAACAAACGCAACCTCTATTGATTATGGCGCTATCGCTAAAGATGGAGAAGTATGCCATAACGGTCACTGCGAAACACAAGGAGATCCAGCCAACAAGTATACCAGAGGATGTGAGGCCGAAGAACGATGTAGATCTGACGAAATTGTTAATGAGCCCGCTACATAA

mRNA sequence

ATGGCAGCCTCCATCAAAACATTGACCATTTTTATAATTATGATGATCGTTTGCTCATTGATGGTAAACCCAACAAACGCAACCTCTATTGATTATGGCGCTATCGCTAAAGATGGAGAAGTATGCCATAACGGTCACTGCGAAACACAAGGAGATCCAGCCAACAAGTATACCAGAGGATGTGAGGCCGAAGAACGATGTAGATCTGACGAAATTGTTAATGAGCCCGCTACATAA

Coding sequence (CDS)

ATGGCAGCCTCCATCAAAACATTGACCATTTTTATAATTATGATGATCGTTTGCTCATTGATGGTAAACCCAACAAACGCAACCTCTATTGATTATGGCGCTATCGCTAAAGATGGAGAAGTATGCCATAACGGTCACTGCGAAACACAAGGAGATCCAGCCAACAAGTATACCAGAGGATGTGAGGCCGAAGAACGATGTAGATCTGACGAAATTGTTAATGAGCCCGCTACATAA

Protein sequence

MAASIKTLTIFIIMMIVCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCEAEERCRSDEIVNEPAT
Homology
BLAST of HG10016233 vs. NCBI nr
Match: KAE8648219.1 (hypothetical protein Csa_018424, partial [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.2e-13
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 6  KTLTIFIIMMI-VCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCEAE 65
          KTL I ++ MI VCSLM NPTNATS+DYGAI K    C +G CE  GDPAN YTRGCE E
Sbjct: 7  KTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPE 66

Query: 66 ERCRS 70
          E CRS
Sbjct: 67 EHCRS 71

BLAST of HG10016233 vs. NCBI nr
Match: KAE8648222.1 (hypothetical protein Csa_023891, partial [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.2e-13
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 6  KTLTIFIIMMI-VCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCEAE 65
          KTL I ++ MI VCSLM NPTNATS+DYGAI K    C +G CE  GDPAN YTRGCE E
Sbjct: 4  KTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPE 63

Query: 66 ERCRS 70
          E CRS
Sbjct: 64 EHCRS 68

BLAST of HG10016233 vs. NCBI nr
Match: KGN49664.1 (hypothetical protein Csa_018501 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.2e-13
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 6  KTLTIFIIMMI-VCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCEAE 65
          KTL I ++ MI VCSLM NPTNATS+DYGAI K    C +G CE  GDPAN YTRGCE E
Sbjct: 7  KTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPE 66

Query: 66 ERCRS 70
          E CRS
Sbjct: 67 EHCRS 71

BLAST of HG10016233 vs. NCBI nr
Match: KAA0058710.1 (protein RALF-like 7 [Cucumis melo var. makuwa] >TYK10516.1 protein RALF-like 7 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-10
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 6  KTLTIFIIMMIVCSLMVNPTNAT-SIDYGAIAKDGEV-CHNGHCETQGDPANKYTRGCEA 65
          K L I I M++VCSLMV+PTNA  S+ YGAI KD +  C +GHC+T  DPAN Y RGCE 
Sbjct: 7  KILAILIAMIMVCSLMVSPTNANPSLSYGAIGKDEDAKCSDGHCKTLEDPANGYNRGCEP 66

Query: 66 EERCRS 70
          E  CRS
Sbjct: 67 ENDCRS 72

BLAST of HG10016233 vs. NCBI nr
Match: KAG6603811.1 (hypothetical protein SDJN03_04420, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 8.7e-10
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 0

Query: 1   MAASIKTLTIFIIMMIVCSLMVNPTNATSIDYGAIAKD-GEVCHNGHCETQGDPANKYTR 60
           MAAS K   I IIMM+V S +V P  A S+ YGA+  D G  C +G CET GDPAN Y R
Sbjct: 69  MAASTKMFAICIIMMLVSSFVVTPAGAESLGYGAVGADAGGKCTDGKCETLGDPANNYNR 128

Query: 61  GCEAEERCR 69
           GCEA++ CR
Sbjct: 129 GCEADKMCR 137

BLAST of HG10016233 vs. ExPASy TrEMBL
Match: A0A0A0KLD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 6  KTLTIFIIMMI-VCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCEAE 65
          KTL I ++ MI VCSLM NPTNATS+DYGAI K    C +G CE  GDPAN YTRGCE E
Sbjct: 7  KTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPE 66

Query: 66 ERCRS 70
          E CRS
Sbjct: 67 EHCRS 71

BLAST of HG10016233 vs. ExPASy TrEMBL
Match: A0A0A0KJT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.7e-12
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 6  KTLTIFIIMMIV-CSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCEAE 65
          KTL I +I MI+ CSL+ NPTNATS+ YG I K    C +G CE  GDPAN YTRGCE E
Sbjct: 7  KTLVILMIAMIMACSLIENPTNATSLGYGVIGKGDARCKDGKCEILGDPANNYTRGCEPE 66

Query: 66 ERCRS 70
          E CRS
Sbjct: 67 EHCRS 71

BLAST of HG10016233 vs. ExPASy TrEMBL
Match: A0A5A7UUI8 (Protein RALF-like 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001660 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 6  KTLTIFIIMMIVCSLMVNPTNAT-SIDYGAIAKDGEV-CHNGHCETQGDPANKYTRGCEA 65
          K L I I M++VCSLMV+PTNA  S+ YGAI KD +  C +GHC+T  DPAN Y RGCE 
Sbjct: 7  KILAILIAMIMVCSLMVSPTNANPSLSYGAIGKDEDAKCSDGHCKTLEDPANGYNRGCEP 66

Query: 66 EERCRS 70
          E  CRS
Sbjct: 67 ENDCRS 72

BLAST of HG10016233 vs. ExPASy TrEMBL
Match: A0A5C7HF32 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020695 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 35/79 (44.30%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 4  SIKTLTIFIIMMIVCSLMVNPTNATSIDYGAIAKD-GEVCHNGHCE--TQGDPANKYTRG 63
          S K +   I M++ C L V   +A  I YGAI +D    C   H E  T+G P N Y RG
Sbjct: 2  SKKLIVFGICMLLPCMLFVQEADARFISYGAIGRDQNPRCGPKHPELCTEGPPVNHYNRG 61

Query: 64 CEAEERCR---SDEIVNEP 77
          CEAEERCR    DE+  +P
Sbjct: 62 CEAEERCRGSAKDEMFRQP 80

BLAST of HG10016233 vs. ExPASy TrEMBL
Match: A0A200RBE7 (Lipid-A-disaccharide synthase OS=Macleaya cordata OX=56857 GN=BVC80_1667g66 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 0

Query: 3   ASIKTLTIFIIMMIVCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCE 62
           A  + L + I + +VCSL++  T AT++ YG +  DG  C    C    D  N Y RGCE
Sbjct: 421 AMSRVLILCIAVALVCSLLMESTGATTLSYGTLGSDGIPCFGRKCGKAND-VNPYNRGCE 480

Query: 63  AEERCRSDEIVNEPAT 79
              RCRSD ++ +  T
Sbjct: 481 KVFRCRSDVVLEKKET 495

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8648219.12.2e-1367.69hypothetical protein Csa_018424, partial [Cucumis sativus][more]
KAE8648222.12.2e-1367.69hypothetical protein Csa_023891, partial [Cucumis sativus][more]
KGN49664.12.2e-1367.69hypothetical protein Csa_018501 [Cucumis sativus][more]
KAA0058710.13.9e-1060.61protein RALF-like 7 [Cucumis melo var. makuwa] >TYK10516.1 protein RALF-like 7 [... [more]
KAG6603811.18.7e-1056.52hypothetical protein SDJN03_04420, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLD01.1e-1367.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=3 SV=1[more]
A0A0A0KJT57.7e-1263.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=3 SV=1[more]
A0A5A7UUI81.9e-1060.61Protein RALF-like 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G... [more]
A0A5C7HF323.5e-0444.30Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020695 PE=3 SV=1[more]
A0A200RBE73.5e-0438.16Lipid-A-disaccharide synthase OS=Macleaya cordata OX=56857 GN=BVC80_1667g66 PE=3... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 29..68
e-value: 1.7E-7
score: 32.1
NoneNo IPR availablePANTHERPTHR34270:SF3PROTEIN RALF-LIKE 15-RELATEDcoord: 1..71
NoneNo IPR availablePANTHERPTHR34270PROTEIN RALF-LIKE 15-RELATEDcoord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10016233.1HG10016233.1mRNA