HG10016230 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10016230
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein RALF-like 7
LocationChr03: 3683523 .. 3683759 (-)
RNA-Seq ExpressionHG10016230
SyntenyHG10016230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCTCCATCAAAACATTGACCATTTTTATAACTATGATGATTGTTTGCTCATTGATGGTAAACCCAACAAACGCAACCTCTATTGATTATGGCGCTATCGCTAAGGATGGAGAAGTATGCCATAACGGTCACTGCGAAACACAAGGAGATCCAGCCAACAAGTATACCAGAGGATGTGAGGCCGAAGAACGATGTAGATCTGACGAAATTGTTAATGAACCCGCTACATAA

mRNA sequence

ATGGCAGCCTCCATCAAAACATTGACCATTTTTATAACTATGATGATTGTTTGCTCATTGATGGTAAACCCAACAAACGCAACCTCTATTGATTATGGCGCTATCGCTAAGGATGGAGAAGTATGCCATAACGGTCACTGCGAAACACAAGGAGATCCAGCCAACAAGTATACCAGAGGATGTGAGGCCGAAGAACGATGTAGATCTGACGAAATTGTTAATGAACCCGCTACATAA

Coding sequence (CDS)

ATGGCAGCCTCCATCAAAACATTGACCATTTTTATAACTATGATGATTGTTTGCTCATTGATGGTAAACCCAACAAACGCAACCTCTATTGATTATGGCGCTATCGCTAAGGATGGAGAAGTATGCCATAACGGTCACTGCGAAACACAAGGAGATCCAGCCAACAAGTATACCAGAGGATGTGAGGCCGAAGAACGATGTAGATCTGACGAAATTGTTAATGAACCCGCTACATAA

Protein sequence

MAASIKTLTIFITMMIVCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCEAEERCRSDEIVNEPAT
Homology
BLAST of HG10016230 vs. NCBI nr
Match: KAE8648219.1 (hypothetical protein Csa_018424, partial [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.2e-13
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 6  KTLTI-FITMMIVCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCEAE 65
          KTL I  + M++VCSLM NPTNATS+DYGAI K    C +G CE  GDPAN YTRGCE E
Sbjct: 7  KTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPE 66

Query: 66 ERCRS 70
          E CRS
Sbjct: 67 EHCRS 71

BLAST of HG10016230 vs. NCBI nr
Match: KAE8648222.1 (hypothetical protein Csa_023891, partial [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.2e-13
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 6  KTLTI-FITMMIVCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCEAE 65
          KTL I  + M++VCSLM NPTNATS+DYGAI K    C +G CE  GDPAN YTRGCE E
Sbjct: 4  KTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPE 63

Query: 66 ERCRS 70
          E CRS
Sbjct: 64 EHCRS 68

BLAST of HG10016230 vs. NCBI nr
Match: KGN49664.1 (hypothetical protein Csa_018501 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.2e-13
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 6  KTLTI-FITMMIVCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCEAE 65
          KTL I  + M++VCSLM NPTNATS+DYGAI K    C +G CE  GDPAN YTRGCE E
Sbjct: 7  KTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPE 66

Query: 66 ERCRS 70
          E CRS
Sbjct: 67 EHCRS 71

BLAST of HG10016230 vs. NCBI nr
Match: KAA0058710.1 (protein RALF-like 7 [Cucumis melo var. makuwa] >TYK10516.1 protein RALF-like 7 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-10
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 6  KTLTIFITMMIVCSLMVNPTNAT-SIDYGAIAKDGEV-CHNGHCETQGDPANKYTRGCEA 65
          K L I I M++VCSLMV+PTNA  S+ YGAI KD +  C +GHC+T  DPAN Y RGCE 
Sbjct: 7  KILAILIAMIMVCSLMVSPTNANPSLSYGAIGKDEDAKCSDGHCKTLEDPANGYNRGCEP 66

Query: 66 EERCRS 70
          E  CRS
Sbjct: 67 ENDCRS 72

BLAST of HG10016230 vs. NCBI nr
Match: KAG6603811.1 (hypothetical protein SDJN03_04420, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 3.3e-09
Identity = 38/69 (55.07%), Postives = 45/69 (65.22%), Query Frame = 0

Query: 1   MAASIKTLTIFITMMIVCSLMVNPTNATSIDYGAIAKD-GEVCHNGHCETQGDPANKYTR 60
           MAAS K   I I MM+V S +V P  A S+ YGA+  D G  C +G CET GDPAN Y R
Sbjct: 69  MAASTKMFAICIIMMLVSSFVVTPAGAESLGYGAVGADAGGKCTDGKCETLGDPANNYNR 128

Query: 61  GCEAEERCR 69
           GCEA++ CR
Sbjct: 129 GCEADKMCR 137

BLAST of HG10016230 vs. ExPASy TrEMBL
Match: A0A0A0KLD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 6  KTLTI-FITMMIVCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCEAE 65
          KTL I  + M++VCSLM NPTNATS+DYGAI K    C +G CE  GDPAN YTRGCE E
Sbjct: 7  KTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPE 66

Query: 66 ERCRS 70
          E CRS
Sbjct: 67 EHCRS 71

BLAST of HG10016230 vs. ExPASy TrEMBL
Match: A0A0A0KJT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 6  KTLTI-FITMMIVCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCEAE 65
          KTL I  I M++ CSL+ NPTNATS+ YG I K    C +G CE  GDPAN YTRGCE E
Sbjct: 7  KTLVILMIAMIMACSLIENPTNATSLGYGVIGKGDARCKDGKCEILGDPANNYTRGCEPE 66

Query: 66 ERCRS 70
          E CRS
Sbjct: 67 EHCRS 71

BLAST of HG10016230 vs. ExPASy TrEMBL
Match: A0A5A7UUI8 (Protein RALF-like 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001660 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 6  KTLTIFITMMIVCSLMVNPTNAT-SIDYGAIAKDGEV-CHNGHCETQGDPANKYTRGCEA 65
          K L I I M++VCSLMV+PTNA  S+ YGAI KD +  C +GHC+T  DPAN Y RGCE 
Sbjct: 7  KILAILIAMIMVCSLMVSPTNANPSLSYGAIGKDEDAKCSDGHCKTLEDPANGYNRGCEP 66

Query: 66 EERCRS 70
          E  CRS
Sbjct: 67 ENDCRS 72

BLAST of HG10016230 vs. ExPASy TrEMBL
Match: A0A5C7HF32 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020695 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 35/79 (44.30%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 4  SIKTLTIFITMMIVCSLMVNPTNATSIDYGAIAKD-GEVCHNGHCE--TQGDPANKYTRG 63
          S K +   I M++ C L V   +A  I YGAI +D    C   H E  T+G P N Y RG
Sbjct: 2  SKKLIVFGICMLLPCMLFVQEADARFISYGAIGRDQNPRCGPKHPELCTEGPPVNHYNRG 61

Query: 64 CEAEERCR---SDEIVNEP 77
          CEAEERCR    DE+  +P
Sbjct: 62 CEAEERCRGSAKDEMFRQP 80

BLAST of HG10016230 vs. ExPASy TrEMBL
Match: A0A200RBE7 (Lipid-A-disaccharide synthase OS=Macleaya cordata OX=56857 GN=BVC80_1667g66 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 0

Query: 3   ASIKTLTIFITMMIVCSLMVNPTNATSIDYGAIAKDGEVCHNGHCETQGDPANKYTRGCE 62
           A  + L + I + +VCSL++  T AT++ YG +  DG  C    C    D  N Y RGCE
Sbjct: 421 AMSRVLILCIAVALVCSLLMESTGATTLSYGTLGSDGIPCFGRKCGKAND-VNPYNRGCE 480

Query: 63  AEERCRSDEIVNEPAT 79
              RCRSD ++ +  T
Sbjct: 481 KVFRCRSDVVLEKKET 495

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8648219.12.2e-1366.15hypothetical protein Csa_018424, partial [Cucumis sativus][more]
KAE8648222.12.2e-1366.15hypothetical protein Csa_023891, partial [Cucumis sativus][more]
KGN49664.12.2e-1366.15hypothetical protein Csa_018501 [Cucumis sativus][more]
KAA0058710.12.3e-1060.61protein RALF-like 7 [Cucumis melo var. makuwa] >TYK10516.1 protein RALF-like 7 [... [more]
KAG6603811.13.3e-0955.07hypothetical protein SDJN03_04420, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLD01.1e-1366.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=3 SV=1[more]
A0A0A0KJT51.3e-1161.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=3 SV=1[more]
A0A5A7UUI81.1e-1060.61Protein RALF-like 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G... [more]
A0A5C7HF322.6e-0444.30Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020695 PE=3 SV=1[more]
A0A200RBE72.6e-0438.16Lipid-A-disaccharide synthase OS=Macleaya cordata OX=56857 GN=BVC80_1667g66 PE=3... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 28..68
e-value: 1.5E-7
score: 32.2
NoneNo IPR availablePANTHERPTHR34270:SF3PROTEIN RALF-LIKE 15-RELATEDcoord: 1..71
NoneNo IPR availablePANTHERPTHR34270PROTEIN RALF-LIKE 15-RELATEDcoord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10016230.1HG10016230.1mRNA