HG10016179 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016179
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	SPARK domain-containing protein
Location	Chr03: 3367056 .. 3367415 (-)
RNA-Seq Expression	HG10016179
Synteny	HG10016179

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACTCCGGTAATGGAAGGCGGCGACCGGAGGACTCCGCCGTGGAAGAACCACCATCAGAGAAAGCCTGAAGGTAGTTCTTGTTGTTCTAGTACGAACAACAAGGATTCAAAAGAAGGTAATTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTGAACGTTATTAGCGACCAAAATGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGA

mRNA sequence

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACTCCGGTAATGGAAGGCGGCGACCGGAGGACTCCGCCGTGGAAGAACCACCATCAGAGAAAGCCTGAAGGTAGTTCTTGTTGTTCTAGTACGAACAACAAGGATTCAAAAGAAGGTAATTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTGAACGTTATTAGCGACCAAAATGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGA

Coding sequence (CDS)

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACTCCGGTAATGGAAGGCGGCGACCGGAGGACTCCGCCGTGGAAGAACCACCATCAGAGAAAGCCTGAAGGTAGTTCTTGTTGTTCTAGTACGAACAACAAGGATTCAAAAGAAGGTAATTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTGAACGTTATTAGCGACCAAAATGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGA

Protein sequence

MGNCCRGQSSTPVMEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSLQSIPEII

Homology

[Close]

BLAST of HG10016179 vs. NCBI nr
Match: XP_008441100.1 (PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypothetical protein E5676_scaffold255G006540 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 98/121 (80.99%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVMEGGDRRTPPWKNHHQRK-PEGSSCCSSTNNKDSKEGNLREVKIRMT 60
           MGNCC+GQ STPV    DRRTPP KNH QR+  EGSSCC       SKE NLREVKIRMT
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCC-------SKETNLREVKIRMT 60

Query: 61  KKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEI 120
           KKELEELVGWLNMADSSFEHVMARLVNVI+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEI
Sbjct: 61  KKELEELVGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEI 114

[Close]

BLAST of HG10016179 vs. NCBI nr
Match: XP_022977330.1 (uncharacterized protein LOC111477681 [Cucurbita maxima])

HSP 1 Score: 174.9 bits (442), Expect = 4.2e-40
Identity = 96/126 (76.19%), Postives = 101/126 (80.16%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVMEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTK 60
           MGNCCRGQSSTPV+ GGDRR  P KN  QR+    SC  ST  K SKEGNLRE+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGSC--STTIKGSKEGNLRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNVISDQNG-------ENNDQMVKLRQQRSWRPSLQ 120
           KEL+EL+GWLNMADSSFE VMARLVNVISDQNG       EN  QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQ 120

[Close]

BLAST of HG10016179 vs. NCBI nr
Match: XP_023544016.1 (uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.6 bits (431), Expect = 8.0e-39
Identity = 93/126 (73.81%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVMEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTK 60
           MGNCCRGQSSTPV+ GGDRR  P KN  QR+   +SC  ST  K SKEGNLRE+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRHGANSC--STTIKGSKEGNLRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNVISDQNGENND-------QMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVNVIS+ NG++++       QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQ 120

[Close]

BLAST of HG10016179 vs. NCBI nr
Match: KAG6603773.1 (hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-38
Identity = 92/126 (73.02%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVMEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTK 60
           MGNCCRGQSSTPV+ G +RR  P KN  QR+   SSC  ST  K SKEGN+RE+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASSC--STTIKGSKEGNMRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNVISDQNGENND-------QMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVNVIS+QNG++++       QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEEDRNIGQMVKLRQQRSWRPSLQ 120

[Close]

BLAST of HG10016179 vs. NCBI nr
Match: KAG7033944.1 (hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-38
Identity = 92/126 (73.02%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVMEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTK 60
           MGNCCRGQSSTPV+ G +RR  P KN  QR+   SSC  ST  K SKEGN+RE+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASSC--STTIKGSKEGNMRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNVISDQNGENND-------QMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVNVIS+QNG++++       QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPSLQ 120

[Close]

BLAST of HG10016179 vs. ExPASy TrEMBL
Match: A0A5D3CNX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006540 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.8e-43
Identity = 98/121 (80.99%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVMEGGDRRTPPWKNHHQRK-PEGSSCCSSTNNKDSKEGNLREVKIRMT 60
           MGNCC+GQ STPV    DRRTPP KNH QR+  EGSSCC       SKE NLREVKIRMT
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCC-------SKETNLREVKIRMT 60

Query: 61  KKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEI 120
           KKELEELVGWLNMADSSFEHVMARLVNVI+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEI
Sbjct: 61  KKELEELVGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEI 114

[Close]

BLAST of HG10016179 vs. ExPASy TrEMBL
Match: A0A1S3B2N5 (uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.8e-43
Identity = 98/121 (80.99%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVMEGGDRRTPPWKNHHQRK-PEGSSCCSSTNNKDSKEGNLREVKIRMT 60
           MGNCC+GQ STPV    DRRTPP KNH QR+  EGSSCC       SKE NLREVKIRMT
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCC-------SKETNLREVKIRMT 60

Query: 61  KKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEI 120
           KKELEELVGWLNMADSSFEHVMARLVNVI+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEI
Sbjct: 61  KKELEELVGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEI 114

[Close]

BLAST of HG10016179 vs. ExPASy TrEMBL
Match: A0A6J1IM02 (uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.1e-40
Identity = 96/126 (76.19%), Postives = 101/126 (80.16%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVMEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTK 60
           MGNCCRGQSSTPV+ GGDRR  P KN  QR+    SC  ST  K SKEGNLRE+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGSC--STTIKGSKEGNLRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNVISDQNG-------ENNDQMVKLRQQRSWRPSLQ 120
           KEL+EL+GWLNMADSSFE VMARLVNVISDQNG       EN  QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQ 120

[Close]

BLAST of HG10016179 vs. ExPASy TrEMBL
Match: A0A0A0KHU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.5e-38
Identity = 89/120 (74.17%), Postives = 98/120 (81.67%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVMEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTK 60
           MGNCC+ QSSTPVMEG    TPP+KNH QR+ +  S         SKE NLREVKIRMTK
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGS---------SKETNLREVKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 120
           KEL+ELVGWLNMADSSFE VMARLVNVI+ QNG+ NNDQ+VKLRQQRSWRPSLQSIPE+I
Sbjct: 61  KELQELVGWLNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 111

[Close]

BLAST of HG10016179 vs. ExPASy TrEMBL
Match: A0A200QLU8 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9009g2 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.9e-10
Identity = 53/142 (37.32%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVMEGGDRRTPPWK------------------------NHHQRKPEGSS 60
           MGNCCR +SST    G D  TP  +                         HHQ + +   
Sbjct: 1   MGNCCRHESST-TWAGDDWGTPKSETFTKEMSKTSTTSEENEEKNLLSCTHHQHEND--- 60

Query: 61  CCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENN 119
             +  N K S   +  EVKIR+TKKELEEL+G +++   S E ++A+L+N  SD +  + 
Sbjct: 61  --NQKNGKSSSSSSSTEVKIRITKKELEELLGKIDVQGLSVEQIIAQLMNSTSDDDQYH- 120

[Close]

BLAST of HG10016179 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 41/130 (31.54%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 1   MGNC-CRGQSSTPVMEGGD-------RRTPPWKNHHQRKPEGSSCCSSTNN----KDSKE 60
           MGNC C  + +T    G D       RR       H    +G      T+N      S  
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSNVTSTSSSSS 60

Query: 61  GNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSW 119
              RE+KIR+TKKELE+L+  + +   + E ++++L+    DQ G +   +    Q   W
Sbjct: 61  SERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQ--PW 120

[Close]

BLAST of HG10016179 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 44.7 bits (104), Expect = 6.2e-05
Identity = 38/123 (30.89%), Postives = 61/123 (49.59%), Query Frame = 0


Query: 1   MGNCCRGQSST--PVMEGGDRRTPPWKNHH---QRKPEGSSCCSSTNNKDSKEGNLREVK 60
           MGNC R +S       +  +  T   ++HH   +   +G     + ++K S   +  E+K
Sbjct: 1   MGNCLRHESEMHWAGEDWDEFITEDEEDHHYSSKTTRDGKPVIVTRDSKSSVPSH--EIK 60

Query: 61  IRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSLQSI 119
           IR+TKK+L +L+  +N+ D +F+        +       NN    +  QQR WRP LQSI
Sbjct: 61  IRLTKKQLHDLLSKVNVHDLTFQQQTFSCPIL-------NNRGYEEANQQRLWRPVLQSI 114

The following BLAST results are available for this feature:

BLAST of HG10016179 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441100.1	1.2e-42	80.99	PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypot...	[more]
XP_022977330.1	4.2e-40	76.19	uncharacterized protein LOC111477681 [Cucurbita maxima]	[more]
XP_023544016.1	8.0e-39	73.81	uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo]	[more]
KAG6603773.1	4.0e-38	73.02	hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7033944.1	4.0e-38	73.02	hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of HG10016179 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10016179 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNX5	5.8e-43	80.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B2N5	5.8e-43	80.99	uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=...	[more]
A0A6J1IM02	2.1e-40	76.19	uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681...	[more]
A0A0A0KHU7	9.5e-38	74.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1	[more]
A0A200QLU8	4.9e-10	37.32	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9009g2 PE=4 SV=1	[more]

BLAST of HG10016179 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	1.1e-06	31.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT3G20340.1	6.2e-05	30.89	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..117
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016179.1	HG10016179.1	mRNA