HG10016129 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016129
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Wound induced protein-like
Location	Chr03: 3040025 .. 3040252 (-)
RNA-Seq Expression	HG10016129
Synteny	HG10016129

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGGGTGTTTGGGCAATTCGCGACACGGTTTATTCTGAGGACGAGAGATCAGGCTGTGAAGAGCGATCCCGCCGCCTTGAAATCTCTCAAGGATTCTTCTTCTTCTTCTTCTTCCAAATGTTACTCCGGTAATAAATTCGGCGTTGGTGAGGGCCAGAAGATTAAGACAGCTGAAGAATCTTTAAGGACTATCATGTATTTGAGTTGTTGGGCTCCTACTTGA

mRNA sequence

ATGAGCAGGGTGTTTGGGCAATTCGCGACACGGTTTATTCTGAGGACGAGAGATCAGGCTGTGAAGAGCGATCCCGCCGCCTTGAAATCTCTCAAGGATTCTTCTTCTTCTTCTTCTTCCAAATGTTACTCCGGTAATAAATTCGGCGTTGGTGAGGGCCAGAAGATTAAGACAGCTGAAGAATCTTTAAGGACTATCATGTATTTGAGTTGTTGGGCTCCTACTTGA

Coding sequence (CDS)

ATGAGCAGGGTGTTTGGGCAATTCGCGACACGGTTTATTCTGAGGACGAGAGATCAGGCTGTGAAGAGCGATCCCGCCGCCTTGAAATCTCTCAAGGATTCTTCTTCTTCTTCTTCTTCCAAATGTTACTCCGGTAATAAATTCGGCGTTGGTGAGGGCCAGAAGATTAAGACAGCTGAAGAATCTTTAAGGACTATCATGTATTTGAGTTGTTGGGCTCCTACTTGA

Protein sequence

MSRVFGQFATRFILRTRDQAVKSDPAALKSLKDSSSSSSSKCYSGNKFGVGEGQKIKTAEESLRTIMYLSCWAPT

Homology

[Close]

BLAST of HG10016129 vs. NCBI nr
Match: KAG6603727.1 (hypothetical protein SDJN03_04336, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 2.4e-25
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1  MSRVFGQFATRFILRTRDQAVKSDPAALKSLKDSSSSSSSKCYSGNKFGVGEGQKIKTAE 60
          MS+V GQFA RF+ RTRDQA+KSDPAALKSLKDS+SSSSSKCYSGNK   GE +K+KTAE
Sbjct: 1  MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSSKCYSGNKLVAGEDRKVKTAE 60

Query: 61 ESLRTIMYLSCWAPT 76
          ESLRT+MYLSCWAPT
Sbjct: 61 ESLRTVMYLSCWAPT 75

[Close]

BLAST of HG10016129 vs. NCBI nr
Match: TYK13098.1 (wound induced protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 4.1e-25
Identity = 65/79 (82.28%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MSRVFGQFATRFILRTRDQAVKSDPAALKSLKD----SSSSSSSKCYSGNKFGVGEGQKI 60
          MSRVFGQFATR I +TRDQAVKSDPAALKSLKD    SSSSSSSKCYSGNK   GEGQ +
Sbjct: 1  MSRVFGQFATRCIQKTRDQAVKSDPAALKSLKDSSSSSSSSSSSKCYSGNKLSAGEGQNV 60

Query: 61 KTAEESLRTIMYLSCWAPT 76
          K AEESLRT+MYLSCWAPT
Sbjct: 61 KIAEESLRTVMYLSCWAPT 79

[Close]

BLAST of HG10016129 vs. NCBI nr
Match: KGN49179.1 (hypothetical protein Csa_003127 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 7.8e-24
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 2   SRVFGQFATRFILRTRDQAVKSDPAALKSLKD--SSSSSSSKCYSGNKFGVGEGQKIKTA 61
           ++VFGQF TR I +TRDQA KSDPAALKSLKD  SSSSSSSKCYSGNKF  GEGQ +K A
Sbjct: 36  AQVFGQFVTRCIQKTRDQAAKSDPAALKSLKDSSSSSSSSSKCYSGNKFSAGEGQNVKIA 95

Query: 62  EESLRTIMYLSCWAPT 76
           EESLRT+MYLSCWAPT
Sbjct: 96  EESLRTVMYLSCWAPT 111

[Close]

BLAST of HG10016129 vs. NCBI nr
Match: KAG5246868.1 (Wound-responsive family protein [Salix suchowensis])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1  MSRVFGQFATRFILRTRDQAVKSDPAALKSLKDSSSSSSSK---CYSG----NKFGVGEG 60
          MSRV  Q   R +   +DQA K D +A+KSL+DS+ SSSSK    +SG    + F     
Sbjct: 6  MSRVLYQSGMRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSVFMEARS 65

Query: 61 QKIKTAEESLRTIMYLSCWAP 75
          +K K AEESLRT+M+LSCW P
Sbjct: 66 EKFKQAEESLRTVMFLSCWGP 86

[Close]

BLAST of HG10016129 vs. NCBI nr
Match: KAF9683494.1 (hypothetical protein SADUNF_Sadunf04G0019400 [Salix dunnii])

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1  MSRVFGQFATRFILRTRDQAVKSDPAALKSLKDSSSSSSSK---CYSG----NKFGVGEG 60
          MSRV  Q   R +   +DQA K D +A+KSL+DS+ SSSSK    +SG    + F     
Sbjct: 6  MSRVLYQSGMRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSVFMDARS 65

Query: 61 QKIKTAEESLRTIMYLSCWAP 75
          +K K AEESLRT+M+LSCW P
Sbjct: 66 EKFKKAEESLRTVMFLSCWGP 86

[Close]

BLAST of HG10016129 vs. ExPASy TrEMBL
Match: A0A5D3CPJ3 (Wound induced protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007060 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 65/79 (82.28%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MSRVFGQFATRFILRTRDQAVKSDPAALKSLKD----SSSSSSSKCYSGNKFGVGEGQKI 60
          MSRVFGQFATR I +TRDQAVKSDPAALKSLKD    SSSSSSSKCYSGNK   GEGQ +
Sbjct: 1  MSRVFGQFATRCIQKTRDQAVKSDPAALKSLKDSSSSSSSSSSSKCYSGNKLSAGEGQNV 60

Query: 61 KTAEESLRTIMYLSCWAPT 76
          K AEESLRT+MYLSCWAPT
Sbjct: 61 KIAEESLRTVMYLSCWAPT 79

[Close]

BLAST of HG10016129 vs. ExPASy TrEMBL
Match: A0A0A0KK17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516870 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.8e-24
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 2   SRVFGQFATRFILRTRDQAVKSDPAALKSLKD--SSSSSSSKCYSGNKFGVGEGQKIKTA 61
           ++VFGQF TR I +TRDQA KSDPAALKSLKD  SSSSSSSKCYSGNKF  GEGQ +K A
Sbjct: 36  AQVFGQFVTRCIQKTRDQAAKSDPAALKSLKDSSSSSSSSSKCYSGNKFSAGEGQNVKIA 95

Query: 62  EESLRTIMYLSCWAPT 76
           EESLRT+MYLSCWAPT
Sbjct: 96  EESLRTVMYLSCWAPT 111

[Close]

BLAST of HG10016129 vs. ExPASy TrEMBL
Match: A0A5N5MZZ3 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_005484 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1  MSRVFGQFATRFILRTRDQAVKSDPAALKSLKDSSSSSSSK---CYSG----NKFGVGEG 60
          MSRV  Q   R +   +DQA K D +A+KSL+DS+ SSSSK    +SG    + F     
Sbjct: 6  MSRVLYQSGMRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSVFMDARS 65

Query: 61 QKIKTAEESLRTIMYLSCWAP 75
          +K K AEESLRT+M+LSCW P
Sbjct: 66 EKFKQAEESLRTVMFLSCWGP 86

[Close]

BLAST of HG10016129 vs. ExPASy TrEMBL
Match: A0A444WYC9 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g100948 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-07
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 1   MSRVFGQFATRFILRTRDQAVKSDPAALKSLKDSSSSSSSK--------CYSGNKFGVGE 60
           MSRV  Q   R +   +DQ  K D + LKSLKDS+ S SSK         ++ +     +
Sbjct: 67  MSRVMYQAGVRVVQGMKDQRSKCDYSTLKSLKDSACSPSSKQARRFSSSSFNSSAIKSSD 126

Query: 61  GQKIKTAEESLRTIMYLSCWAP 75
             KIK AEESLRT+MYLSCW P
Sbjct: 127 SHKIKQAEESLRTVMYLSCWGP 148

[Close]

BLAST of HG10016129 vs. ExPASy TrEMBL
Match: A0A6N2KXE2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS151145 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 40/81 (49.38%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 1  MSRVFGQFATRFILRTRDQAVKSDPAALKSLKDSSSSSSSK---CYSG----NKFGVGEG 60
          MSRV  Q   R     +DQA K D  A+KSL+DS+ SSSSK    +SG    + F     
Sbjct: 6  MSRVLYQSGMRVAQGMKDQASKCDSTAIKSLRDSACSSSSKQARRFSGSVDSSVFMEARS 65

Query: 61 QKIKTAEESLRTIMYLSCWAP 75
          +K K AEESLRT+M+LSCW P
Sbjct: 66 EKFKQAEESLRTVMFLSCWGP 86

[Close]

BLAST of HG10016129 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 50.1 bits (118), Expect = 9.2e-07
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 12 FILRTRDQAVKSDPAALKSLKDSSSSSSSKCYSGNKFGVGEGQKIKTAEESLRTIMYLSC 71
          +ILR+ +Q ++++  ++   K  SSSS S   + +    GE +K K AEESLRT+MYLSC
Sbjct: 31 YILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSS----GESEKAKKAEESLRTVMYLSC 89

Query: 72 WAP 75
          W P
Sbjct: 91 WGP 89

[Close]

BLAST of HG10016129 vs. TAIR 10
Match: AT4G05070.1 (Wound-responsive family protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.0e-05
Identity = 28/84 (33.33%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 1  MSRVFGQFATRFILRTRDQAVKSDPAALKSL--------KDSSSSSSSKCYSG----NKF 60
          M+RV  QF+ + +       V      L+S         + +SSSSS +   G    ++F
Sbjct: 1  MNRVISQFSGKLMKEKSVTGVSGGDTTLRSAVKESVSSPQSASSSSSVRRLKGDLESSRF 60

Query: 61 GVGEGQKIKTAEESLRTIMYLSCW 73
          G    ++++ AEESLRT+M+LSCW
Sbjct: 61 GAAASERLRQAEESLRTVMFLSCW 84

[Close]

BLAST of HG10016129 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.1e-04
Identity = 23/64 (35.94%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 12 FILRTRDQAVKSDPAALKSLKDSSSSSSSKCYSGNKFGVGEGQKIKTAEESLRTIMYLSC 71
          +++R+ +Q ++++  ++   K  SSSS           +    K K AEESLRT+MYLSC
Sbjct: 31 YVIRSANQYLRNNLRSVSQAKKLSSSS-----------IDYTNKTKQAEESLRTVMYLSC 83

Query: 72 WAPT 76
          W P+
Sbjct: 91 WGPS 83

The following BLAST results are available for this feature:

BLAST of HG10016129 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603727.1	2.4e-25	81.33	hypothetical protein SDJN03_04336, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK13098.1	4.1e-25	82.28	wound induced protein-like [Cucumis melo var. makuwa]	[more]
KGN49179.1	7.8e-24	80.26	hypothetical protein Csa_003127 [Cucumis sativus]	[more]
KAG5246868.1	1.7e-07	49.38	Wound-responsive family protein [Salix suchowensis]	[more]
KAF9683494.1	2.3e-07	49.38	hypothetical protein SADUNF_Sadunf04G0019400 [Salix dunnii]	[more]

BLAST of HG10016129 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10016129 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPJ3	2.0e-25	82.28	Wound induced protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0KK17	3.8e-24	80.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516870 PE=4 SV=1	[more]
A0A5N5MZZ3	1.1e-07	49.38	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_005484 PE=4 SV=1	[more]
A0A444WYC9	1.9e-07	46.34	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g100948 PE=4 SV=1	[more]
A0A6N2KXE2	3.2e-07	49.38	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS151145 PE=4 SV=...	[more]

BLAST of HG10016129 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10270.1	9.2e-07	44.44	Wound-responsive family protein	[more]
AT4G05070.1	3.0e-05	33.33	Wound-responsive family protein	[more]
AT4G10265.1	1.1e-04	35.94	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 18..74 e-value: 9.6E-11 score: 42.5
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 6..75
None	No IPR available	PANTHER	PTHR33090:SF68	OSJNBA0043L09.16 PROTEIN	coord: 6..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016129.1	HG10016129.1	mRNA