HG10015946 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015946
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-binding protein
Location	Chr03: 1657558 .. 1660210 (-)
RNA-Seq Expression	HG10015946
Synteny	HG10015946

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAACTCATGGCCCAGCGTGGCATGGTATGCTGTACTTTTTGTTTGCATGCGTAGTAATTGCTTACATTTTACTTGTTCATGGACATCTTTGCTGACTTCTGATGATGATTAGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGGTCCTCAATTTTATTTCCATAATTTTTTGTTGATTTTTAGTTACCAATTTTGTTATTCGAGTTCTACTTTTTTAATATGCATATGATAACAATTACTTTCACTTTCAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAATGCAAGCGAGAGAAAGACGTAAGTTGAAACAGAGAAGTTATTTTCAAAATACTTCATTGAAATTTATTATTCAACTTTGGAGTAAGCTAGTTTCTTCTATCTATGTGATCTATGCATTCTCTGATTGTCTCAATATGGGTTTTTTCCTTACTATTTTTGTTTGAAATTCTGGATCCAAGTCACATCCTGAGTTAATCATGAAATTAATGTAATTTTATGTTGTGATGCTATTAATGTGTAGTTGAATATTGTAGTTACATGGTGACCTATGTGTCCGAGTGGTATGTGATTATGGAATTTTGAAAATTAGCTGGTTCAATCACTTAATAAACTTGGAAGCAAGGGTAGGTGTAAGGTTAGTACACAACTTTGGTGGCTGTTGTTAGTGGGAACTGTGGAAATAAGTTAACAGAAGGATCTTTAAGAGAAAAGTAGGAATTTTGTGGAGATTGATGTTTCAATACATTTGCAGCTTTCATTTTGTCTACAAGTGAGAAAGAATTCTGTTATTTCCCTTCATTTTTAACATGACAATTTGAGTTTGTTGTCATCTCCCTATCCTCTTGCAGGATTTGGAGACATAGTCTCATAGCCTTTTCGTGCCCTCCTTCATGAATACAATTATTTATTATTTGAAAGGGAAACATGAGTGGTATTGATTTCTGGATTTGGCCGTGATTGGAATTCTCTTTACTGTATACTTACACAAGATGTTTAAGATGTTCGCGTAGACACTAATGTTGGCATCAATATGGTAAAAAGGTTCCAGAAAACCCATCCATGTACTCATTCCTATGTCAACAAAGTTAGAAATTTTGGCAACACATATCCCAAACTTTTGCTTGAGTTAGGTTTTCAGTTATTTAGTAGAAAGTCGGAGAAACTTTTGTTGACCATGATTTTAAGAGTGCAAAAGTTCTCTTGTTTAATGCACAACTAAGGCCATCGTGTAAGGCACTGTGACTAGAGAGAAACCAATTATTTTTCATGAGAAGTGGTGTGTGGAGTGGGATGAAGCTTTGGTCATAGCTAAGTGTATCGTTAGTTCAATTTTGATCAATGATGGTCCATGGACTTGGTTTGGAGCTGCTTCACCCTCCAGCTTTTCATTGCCTTAGTGGTATTAAAGTATTGATGTATAATTACATTTACCATAACCCATCAACTTAAGCTTTTGGGTTGATTGGTGATTTAACAAGTGAAACATGCTAATGATCATATAATTGTTGTTCATTGTTTCACACCTATATTTTGAGGCTTTACCGTTTGATTAAATTTACATTTTGTCAGTTGTTTGTAACTCTTACATTTTTATCAATGGTTGAGATTTGCACCTGAGCTTTCTTATATATAAAAAAAGAGATTTGTACATGAGCTTAGGATATCATTCTTTAGTTATGCTTATTTTTATTTATTTATTTTTAATAAACTAATTAAAATAGTAATAAACCACTTTTACAAAAAGAGATGACAGTGAACAAAATAAAGGGTAGATCATACAAAAATTGTGGACAAAAGCCACAAAAGGAGTCCAAATTATAATTGTTGTTCATTGTTTCACAATTGGTTTGTATATTATTATTTCTCAATTGAAGTTGAATGCCTGTCAATAGTACTTTTTGCAACTGAGTAGATTTGTGGTTTTTGCATTGAATACCTTTGGCTCTTCATCATAATTATCAAATAAGATTTCTGAACTAAAAGTATAAAGATTATGGATATTTTTTGTGTTGTATGTTTATGTTACCAGATCTGAATTAGCCTCAAGCCTTATTTTGGAAAATTAGATGTCATTCTTGTAAAACTGTGGTTTGCTGTTAGCTGGGATGGAGGTGGAAGGGGAAAATTGTACCCTAGTTGGTGATTGTTGCATATAGGTGGTGGCTGTTTTGCTCTATTCACTTTTCCCCCTGTGCTTTTATGCAGTTGCTCGAATTGCACTGGTTAAACCTGAGAAGGCAAGAGGTGTTGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAAAAGGTACAGCAGTATATCGTTTCAGTTTTTCTGGCAAAATTGTTGCCCCTATATTTACTTTAGAATATGGTAAACACCAGTATGAATGAAACAACGGACTTTACCATTTCTTTTCAGGTCTCTGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAACCAGACTACAAAACAGACGAAAGTCACTGTGAGTTCTCATTGCTTACTTTATGGGTGCCTGCTGAAATATGGTACGTTGTCCTAACGGTCTTCGTATATTTTCATTATTCTTCAGATACAAAGGCGTCGAAGCGTTCTTGAGGATGACGATTAG

mRNA sequence

ATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAATGCAAGCGAGAGAAAGACTTGCTCGAATTGCACTGGTTAAACCTGAGAAGGCAAGAGGTGTTGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAAAAGGTCTCTGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAACCAGACTACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGCGTTCTTGAGGATGACGATTAG

Coding sequence (CDS)

ATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAATGCAAGCGAGAGAAAGACTTGCTCGAATTGCACTGGTTAAACCTGAGAAGGCAAGAGGTGTTGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAAAAGGTCTCTGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAACCAGACTACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGCGTTCTTGAGGATGACGATTAG

Protein sequence

MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

Homology

[Close]

BLAST of HG10015946 vs. NCBI nr
Match: XP_038881892.1 (DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding protein DDB_G0278111 [Benincasa hispida])

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-47
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA
Sbjct: 14  MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA 73

Query: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 74  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 128

[Close]

BLAST of HG10015946 vs. NCBI nr
Match: KAA0052566.1 (DNA-binding protein [Cucumis melo var. makuwa] >TYK13259.1 DNA-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 197.6 bits (501), Expect = 5.9e-47
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERL+RIALVKPEKA
Sbjct: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKA 60

Query: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115

[Close]

BLAST of HG10015946 vs. NCBI nr
Match: XP_031744105.1 (DNA-binding protein DDB_G0278111 isoform X1 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 5.9e-47
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERL+RIALVKPEKA
Sbjct: 17  MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKA 76

Query: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 77  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 131

[Close]

BLAST of HG10015946 vs. NCBI nr
Match: XP_008439666.1 (PREDICTED: DNA-binding protein DDB_G0278111 [Cucumis melo] >XP_011658277.1 DNA-binding protein DDB_G0278111 isoform X2 [Cucumis sativus] >KAE8647741.1 hypothetical protein Csa_003574 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 5.9e-47
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERL+RIALVKPEKA
Sbjct: 14  MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKA 73

Query: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 74  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 128

[Close]

BLAST of HG10015946 vs. NCBI nr
Match: XP_022925641.1 (DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita moschata] >XP_022978918.1 DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 194.9 bits (494), Expect = 3.8e-46
Identity = 112/115 (97.39%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERLARIALVKPEKA
Sbjct: 20  MQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 79

Query: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVL+DDD
Sbjct: 80  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLDDDD 134

[Close]

BLAST of HG10015946 vs. ExPASy Swiss-Prot
Match: Q54YS0 (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-18
Identity = 60/114 (52.63%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 2   QELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKAR 61
           Q+L   +G G   +PE Q+ QE  R EA ERRQ +L QIL+  ARERL+RI +VKPEK+R
Sbjct: 9   QQLSQMQGQGF--DPEAQQRQEAQRQEANERRQGILIQILTPDARERLSRITIVKPEKSR 68

Query: 62  GVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
            +ED+I+RAAQ GQ+ E+V + +LI+LLEQ+ ++ TK+T +T++RR   +EDDD
Sbjct: 69  QIEDLIIRAAQTGQLTERVDDAKLISLLEQL-SEKTKKTTITMKRR--TIEDDD 117

[Close]

BLAST of HG10015946 vs. ExPASy Swiss-Prot
Match: O14737 (Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-12
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 21  AQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKV 80
           AQ+EA+    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKV
Sbjct: 28  AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKV 87

Query: 81  SEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           SE+ LI +L++++ QT K T V   RR+ +  D+D
Sbjct: 88  SEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122

[Close]

BLAST of HG10015946 vs. ExPASy Swiss-Prot
Match: P56812 (Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-12
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 21  AQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKV 80
           AQ+EA+    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KV
Sbjct: 28  AQQEAKQREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKV 87

Query: 81  SEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           SE+ LI +LE+++ QT K+T V   RR+ +  D+D
Sbjct: 88  SEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122

[Close]

BLAST of HG10015946 vs. ExPASy Swiss-Prot
Match: Q5RBT0 (Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-12
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 21  AQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKV 80
           AQ+EA+    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKV
Sbjct: 28  AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKV 87

Query: 81  SEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           SE+ LI +L++++ QT K T V   RR+ +  D+D
Sbjct: 88  SEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122

[Close]

BLAST of HG10015946 vs. ExPASy Swiss-Prot
Match: Q2HJH9 (Programmed cell death protein 5 OS=Bos taurus OX=9913 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-12
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 21  AQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKV 80
           AQ+EA+    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KV
Sbjct: 28  AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKV 87

Query: 81  SEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           SE+ LI +LE+++ QT K+T V   RR+ +  D+D
Sbjct: 88  SEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122

[Close]

BLAST of HG10015946 vs. ExPASy TrEMBL
Match: A0A5D3CSS6 (DNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008770 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERL+RIALVKPEKA
Sbjct: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKA 60

Query: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115

[Close]

BLAST of HG10015946 vs. ExPASy TrEMBL
Match: A0A0A0KKK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522140 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERL+RIALVKPEKA
Sbjct: 17  MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKA 76

Query: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 77  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 131

[Close]

BLAST of HG10015946 vs. ExPASy TrEMBL
Match: A0A1S3AZB0 (DNA-binding protein DDB_G0278111 OS=Cucumis melo OX=3656 GN=LOC103484392 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERL+RIALVKPEKA
Sbjct: 14  MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKA 73

Query: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 74  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 128

[Close]

BLAST of HG10015946 vs. ExPASy TrEMBL
Match: A0A6J1IUM6 (DNA-binding protein DDB_G0278111-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478726 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 112/115 (97.39%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERLARIALVKPEKA
Sbjct: 20  MQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 79

Query: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVL+DDD
Sbjct: 80  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLDDDD 134

[Close]

BLAST of HG10015946 vs. ExPASy TrEMBL
Match: A0A6J1IVC3 (DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478726 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 112/115 (97.39%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERLARIALVKPEKA
Sbjct: 14  MQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 73

Query: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVL+DDD
Sbjct: 74  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLDDDD 128

[Close]

BLAST of HG10015946 vs. TAIR 10
Match: AT1G29850.1 (double-stranded DNA-binding family protein )

HSP 1 Score: 161.0 bits (406), Expect = 5.7e-40
Identity = 97/118 (82.20%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MQELMAQRGM---GSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKP 60
           MQELMA++GM   G+Q NPEQ+K QE+A+ EA+ERRQMMLSQ+LS QARER+ARIALVKP
Sbjct: 14  MQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVKP 73

Query: 61  EKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           EKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT QRRR V  DDD
Sbjct: 74  EKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTYQRRRGV--DDD 129

[Close]

BLAST of HG10015946 vs. TAIR 10
Match: AT1G29850.2 (double-stranded DNA-binding family protein )

HSP 1 Score: 160.6 bits (405), Expect = 7.4e-40
Identity = 97/119 (81.51%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MQELMAQRGM----GSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVK 60
           MQELMA++GM    G+Q NPEQ+K QE+A+ EA+ERRQMMLSQ+LS QARER+ARIALVK
Sbjct: 14  MQELMARQGMQGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVK 73

Query: 61  PEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           PEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT QRRR V  DDD
Sbjct: 74  PEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTYQRRRGV--DDD 130

[Close]

BLAST of HG10015946 vs. TAIR 10
Match: AT1G29850.3 (double-stranded DNA-binding family protein )

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-37
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MQELMAQRGM---GSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKP 60
           MQELMA++GM   G+Q NPEQ+K QE+A+ EA+ERRQMMLSQ+LS QARER+ARIALVKP
Sbjct: 14  MQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVKP 73

Query: 61  EKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSV 111
           EKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT+    +V
Sbjct: 74  EKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTVSTNGAV 126

The following BLAST results are available for this feature:

BLAST of HG10015946 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881892.1	2.6e-47	100.00	DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding...	[more]
KAA0052566.1	5.9e-47	99.13	DNA-binding protein [Cucumis melo var. makuwa] >TYK13259.1 DNA-binding protein [...	[more]
XP_031744105.1	5.9e-47	99.13	DNA-binding protein DDB_G0278111 isoform X1 [Cucumis sativus]	[more]
XP_008439666.1	5.9e-47	99.13	PREDICTED: DNA-binding protein DDB_G0278111 [Cucumis melo] >XP_011658277.1 DNA-b...	[more]
XP_022925641.1	3.8e-46	97.39	DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita moschata] >XP_022978...	[more]

BLAST of HG10015946 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54YS0	2.1e-18	52.63	DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G02...	[more]
O14737	2.9e-12	44.21	Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3	[more]
P56812	2.9e-12	44.21	Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3	[more]
Q5RBT0	2.9e-12	44.21	Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3	[more]
Q2HJH9	3.8e-12	44.21	Programmed cell death protein 5 OS=Bos taurus OX=9913 GN=PDCD5 PE=2 SV=3	[more]

BLAST of HG10015946 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSS6	2.9e-47	99.13	DNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G...	[more]
A0A0A0KKK2	2.9e-47	99.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522140 PE=3 SV=1	[more]
A0A1S3AZB0	2.9e-47	99.13	DNA-binding protein DDB_G0278111 OS=Cucumis melo OX=3656 GN=LOC103484392 PE=3 SV...	[more]
A0A6J1IUM6	1.9e-46	97.39	DNA-binding protein DDB_G0278111-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1IVC3	1.9e-46	97.39	DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of HG10015946 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29850.1	5.7e-40	82.20	double-stranded DNA-binding family protein	[more]
AT1G29850.2	7.4e-40	81.51	double-stranded DNA-binding family protein	[more]
AT1G29850.3	1.6e-37	79.65	double-stranded DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002836	PDCD5-like	PIRSF	PIRSF015730	TFAR19	coord: 1..115 e-value: 1.2E-32 score: 110.6
IPR002836	PDCD5-like	PFAM	PF01984	dsDNA_bind	coord: 1..107 e-value: 8.1E-29 score: 100.1
IPR002836	PDCD5-like	PANTHER	PTHR10840	PROGRAMMED CELL DEATH PROTEIN 5	coord: 1..113
IPR036883	PDCD5-like superfamily	GENE3D	1.10.8.140		coord: 1..97 e-value: 7.6E-28 score: 98.6
IPR036883	PDCD5-like superfamily	SUPERFAMILY	46950	Double-stranded DNA-binding domain	coord: 7..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR10840:SF3	BNAA07G07610D PROTEIN	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015946.1	HG10015946.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding