HG10015825 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015825
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Location	Chr03: 604162 .. 605691 (+)
RNA-Seq Expression	HG10015825
Synteny	HG10015825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCCATGGAAGCCGCCTCCGTCGTCAGCAGTTACAGCTCCGCCTCCGCCTCCGCCTCCGACAACCACCACCATCACCATCTTCAGTATCCTCTCTTGGTCCCCGTACCACCATCACCGCCGCCGCCTGCACTCAGCAGGTACTTTCCATTTTTCAACAACCATAAACGTTTCTTTCTTGTTTTCATTTTCATTTTCATTTTTCTCTCTCACTTTTCTTTTTTCCAAGATTTTAATCGTTAAGAAATGTCTACTAAATCATCCATTAAATTTAAAATCATCCAAAATCTAGTTGACATAATTTCAACTAATTTTAACTTTTAAAAGTCTTTATTCTTTTATTTTTATTTTTTTAAAAAGAGAAATTTACTCTTAGCAGTTGATTAGTTGATTTCGAATTAAATTGAAACATTTGTTTTAATATTTTAAAAATAGAATATATATATATATATATATATATATATAGAAAATTACTAGTCTTGAATTTCGATCAACATTAACCTTTTAATTTAAATTTGAGAGAAGTAAAAAACAATATCAACCAAGTTGTTTAGTCTAAAAAGTTGTTATATTGATAGATTTGTAGTCGTACAACCAATCGTGTAGGACCCAATAAGTAGGTGCTATTTCAAGATATTTTTTTTATATACACATTATAATATAAAATAAAAATAATTTAATTTTTGATACAAATAAAATTTTATTAACCACGATGTTAGAATTTAGTTTTTCCCGTTTATAATGAAGATTTAGTGAGAAATTTTTTCAAATAAAAAAAATGTTAAAATATTTATAGAAAATAGTAAAAAATATACAAATAGATATTCATAGACTTCTACCATTTCTATGGTGATACATCTTAATAGACTTCTATTCGCGTCTATCGAAACTATCTAAAAATTTTGCTATTTTGTATAAATAAATTTTCTTGTTTTTCTATTTTTTAAAACTTCTCTGTTTTAATGTAATTTTAATTTTTTAAAATGATAGGAAATACTAAAATTTTTATTTAAAAAGATATAGAGTAAGATGAGGAGTTGAGTTGAGTCCACTACCCGTGAACACAGGTACGAATCACAGAAGCGACGAGACTGGAACACGTTTGGGCAGTACCTAAGGAACCACCGGCCTCCACTGACACTATCCCGTTGCAGCGGGGCTCATATTCTGGAGTTCCTCCGCTACCTCGACCAGTTCGGAAAGACCAAGGTCCACATCTCCTGCTGCCCGTTCTTCGGCCATCCACAGCCCCCTGCTCCCTGTCCCTGCCCCCTCCGCCAGGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCGTTCGGTACCCGAGCCGTGAGGCTGTATTTAAGGGAAGTGAGAGAGTCGCAGGCTAAGGCCAGAGGAATTGCTTACGAGAAGAAGAAGCGTAAGAAATCCGGGATGCCTCCGCTGAAGAAGAACCAGCCCCAACCCATGCCTCTCTTGGATCACTCCGCTTCATAA

mRNA sequence

ATGTTGGCCATGGAAGCCGCCTCCGTCGTCAGCAGTTACAGCTCCGCCTCCGCCTCCGCCTCCGACAACCACCACCATCACCATCTTCAGTATCCTCTCTTGGTCCCCGTACCACCATCACCGCCGCCGCCTGCACTCAGCAGGTACGAATCACAGAAGCGACGAGACTGGAACACGTTTGGGCAGTACCTAAGGAACCACCGGCCTCCACTGACACTATCCCGTTGCAGCGGGGCTCATATTCTGGAGTTCCTCCGCTACCTCGACCAGTTCGGAAAGACCAAGGTCCACATCTCCTGCTGCCCGTTCTTCGGCCATCCACAGCCCCCTGCTCCCTGTCCCTGCCCCCTCCGCCAGGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCGTTCGGTACCCGAGCCGTGAGGCTGTATTTAAGGGAAGTGAGAGAGTCGCAGGCTAAGGCCAGAGGAATTGCTTACGAGAAGAAGAAGCGTAAGAAATCCGGGATGCCTCCGCTGAAGAAGAACCAGCCCCAACCCATGCCTCTCTTGGATCACTCCGCTTCATAA

Coding sequence (CDS)

ATGTTGGCCATGGAAGCCGCCTCCGTCGTCAGCAGTTACAGCTCCGCCTCCGCCTCCGCCTCCGACAACCACCACCATCACCATCTTCAGTATCCTCTCTTGGTCCCCGTACCACCATCACCGCCGCCGCCTGCACTCAGCAGGTACGAATCACAGAAGCGACGAGACTGGAACACGTTTGGGCAGTACCTAAGGAACCACCGGCCTCCACTGACACTATCCCGTTGCAGCGGGGCTCATATTCTGGAGTTCCTCCGCTACCTCGACCAGTTCGGAAAGACCAAGGTCCACATCTCCTGCTGCCCGTTCTTCGGCCATCCACAGCCCCCTGCTCCCTGTCCCTGCCCCCTCCGCCAGGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCGTTCGGTACCCGAGCCGTGAGGCTGTATTTAAGGGAAGTGAGAGAGTCGCAGGCTAAGGCCAGAGGAATTGCTTACGAGAAGAAGAAGCGTAAGAAATCCGGGATGCCTCCGCTGAAGAAGAACCAGCCCCAACCCATGCCTCTCTTGGATCACTCCGCTTCATAA

Protein sequence

MLAMEAASVVSSYSSASASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDWNTFGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSGMPPLKKNQPQPMPLLDHSAS

Homology

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BLAST of HG10015825 vs. NCBI nr
Match: XP_038881876.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida])

HSP 1 Score: 376.3 bits (965), Expect = 1.6e-100
Identity = 181/200 (90.50%), Postives = 190/200 (95.00%), Query Frame = 0


Query: 1   MLAMEAASVVSSYSSASASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDWNTF 60
           MLAM+AAS V+SY+SAS + S++ +HHH QYPLLVP PPSPPPPALSRYESQKRRDWNTF
Sbjct: 1   MLAMQAASAVNSYTSASTTTSNSDNHHHRQYPLLVPAPPSPPPPALSRYESQKRRDWNTF 60

Query: 61  GQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPLRQA 120
           GQYL+NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVH SCCPFFGHPQPPAPCPCPLRQA
Sbjct: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSG 180
           WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSG
Sbjct: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSG 180

Query: 181 MPPLKKNQPQPMPLLDHSAS 201
           MP +KKN  QPMPLLDHSAS
Sbjct: 181 MPSVKKN--QPMPLLDHSAS 198

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BLAST of HG10015825 vs. NCBI nr
Match: XP_022978370.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima])

HSP 1 Score: 354.8 bits (909), Expect = 5.0e-94
Identity = 179/207 (86.47%), Postives = 185/207 (89.37%), Query Frame = 0


Query: 1   MLAMEAASVVSSYSSAS---ASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDW 60
           MLAME+AS V+SYSSAS    S SDNHHH    YPLL P PPSPPPPALSRYESQKRRDW
Sbjct: 1   MLAMESASAVNSYSSASTTTTSTSDNHHH----YPLLEPAPPSPPPPALSRYESQKRRDW 60

Query: 61  NTFGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPL 120
           NTFGQYL+NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVH SCCPFFGHPQPPAPCPCPL
Sbjct: 61  NTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPL 120

Query: 121 RQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRK 180
           RQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVR+SQAKARGIAYE KKRK
Sbjct: 121 RQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KKRK 180

Query: 181 KSGMPPLKKNQ----PQPMPLLDHSAS 201
           KS M PLKK+Q     +PMPL DHSAS
Sbjct: 181 KSAMAPLKKHQRHAPDEPMPLTDHSAS 202

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BLAST of HG10015825 vs. NCBI nr
Match: XP_023544575.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353.2 bits (905), Expect = 1.5e-93
Identity = 177/204 (86.76%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MLAMEAASVVSSYSSAS---ASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDW 60
           MLAME+AS V+SY+SAS    S SDNHHH H  YPLL P PPSPPPPALSRYESQKRRDW
Sbjct: 1   MLAMESASAVNSYTSASTTTTSTSDNHHHLH--YPLLEPAPPSPPPPALSRYESQKRRDW 60

Query: 61  NTFGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPL 120
           NTFGQYL+NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVH SCCPFFGHPQPPAPCPCPL
Sbjct: 61  NTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPL 120

Query: 121 RQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRK 180
           RQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVR+SQAKARGIAYEKKKRK
Sbjct: 121 RQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRK 180

Query: 181 KSGMPPLKKNQPQ-PMPLLDHSAS 201
           KS M PLKK+Q   P    DHSAS
Sbjct: 181 KSAMAPLKKHQRHAPDEPTDHSAS 202

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BLAST of HG10015825 vs. NCBI nr
Match: KAG6581495.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034783.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 351.7 bits (901), Expect = 4.3e-93
Identity = 173/201 (86.07%), Postives = 181/201 (90.05%), Query Frame = 0


Query: 1   MLAMEAASVVSSYSSASASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDWNTF 60
           MLAME  SV +S ++ S S + +HHHHHLQYPLL P PPSPPPPALSRYESQKRRDWNTF
Sbjct: 1   MLAME--SVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTF 60

Query: 61  GQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPLRQA 120
           GQYL+NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVH SCCPFFGHPQPPAPCPCPLRQA
Sbjct: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSG 180
           WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVR+SQAKARGIAYEKKKRKKS 
Sbjct: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSA 180

Query: 181 MPPLKKNQPQ-PMPLLDHSAS 201
           M PLKK+Q   P    DHSAS
Sbjct: 181 MAPLKKHQRHAPDEPTDHSAS 199

[Close]

BLAST of HG10015825 vs. NCBI nr
Match: XP_022925731.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata])

HSP 1 Score: 348.6 bits (893), Expect = 3.6e-92
Identity = 173/201 (86.07%), Postives = 179/201 (89.05%), Query Frame = 0


Query: 1   MLAMEAASVVSSYSSASASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDWNTF 60
           MLAME+ S     S+ + S SDN HHHHLQYPLL P PPSPPPPALSRYESQKRRDWNTF
Sbjct: 1   MLAMESVST----STTTTSTSDN-HHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTF 60

Query: 61  GQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPLRQA 120
           GQYL+NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVH SCCPFFGHPQPPAPCPCPLRQA
Sbjct: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSG 180
           WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVR+SQAKARGIAYEKKKRKKS 
Sbjct: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSA 180

Query: 181 MPPLKKNQPQ-PMPLLDHSAS 201
           M PLKK+Q   P    DHSAS
Sbjct: 181 MAPLKKHQRHAPDEPTDHSAS 196

[Close]

BLAST of HG10015825 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-69
Identity = 124/158 (78.48%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 39  PSPPPPALSRYESQKRRDWNTFGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHI 98
           PS   P+LSRYESQKRRDWNTFGQYLRNHRPPL+LSRCSGAH+LEFL+Y+DQFGKTKVH 
Sbjct: 71  PSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHT 130

Query: 99  SCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLRE 158
             CPF+GHP PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFG RAVRLYLRE
Sbjct: 131 PVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLRE 190

Query: 159 VRESQAKARGIAYEKKKRKK-----SGMPPLKKNQPQP 192
           VRE+QA+ARGI+YEKKKRKK     +G  P  +  P P
Sbjct: 191 VRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPP 228

[Close]

BLAST of HG10015825 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-69
Identity = 124/158 (78.48%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 39  PSPPPPALSRYESQKRRDWNTFGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHI 98
           PS   P+LSRYESQKRRDWNTFGQYLRNHRPPL+LSRCSGAH+LEFL+Y+DQFGKTKVH 
Sbjct: 71  PSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHT 130

Query: 99  SCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLRE 158
             CPF+GHP PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFG RAVRLYLRE
Sbjct: 131 PVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLRE 190

Query: 159 VRESQAKARGIAYEKKKRKK-----SGMPPLKKNQPQP 192
           VRE+QA+ARGI+YEKKKRKK     +G  P  +  P P
Sbjct: 191 VRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPP 228

[Close]

BLAST of HG10015825 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 5.8e-69
Identity = 133/189 (70.37%), Postives = 145/189 (76.72%), Query Frame = 0


Query: 1   MLAMEAASVVSSYSSASASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDWNTF 60
           M+A  A +  +S SS+S+S     +                    LSRYE+QKRRDWNTF
Sbjct: 20  MIAAAATTTTTSSSSSSSSGGSGTNQ-------------------LSRYENQKRRDWNTF 79

Query: 61  GQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPLRQA 120
           GQYLRNHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVH   CPFFGHP PPAPC CPLRQA
Sbjct: 80  GQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQA 139

Query: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSG 180
           WGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREVR+SQAKARGI+YEKKKRK+  
Sbjct: 140 WGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP- 188

Query: 181 MPPLKKNQP 190
            PPL   QP
Sbjct: 200 PPPLPPAQP 188

[Close]

BLAST of HG10015825 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-68
Identity = 117/136 (86.03%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 47  SRYESQKRRDWNTFGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGH 106
           SRYESQKRRDWNTFGQYLRNHRPPL+L+RCSGAH+LEFLRYLDQFGKTKVH   CPFFGH
Sbjct: 39  SRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAPACPFFGH 98

Query: 107 PQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKA 166
           P PPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFG RAVRLYLREVRE QA+A
Sbjct: 99  PAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARA 158

Query: 167 RGIAYEKKKRKKSGMP 183
           RG++YEKKKRKK   P
Sbjct: 159 RGVSYEKKKRKKPPHP 174

[Close]

BLAST of HG10015825 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.9e-68
Identity = 121/147 (82.31%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 44  PALSRYESQKRRDWNTFGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPF 103
           P  SRYESQKRRDW+TFGQYLRNHRPPL LSRCSGAH+LEFLRYLDQFGKTKVH + CPF
Sbjct: 18  PRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPF 77

Query: 104 FGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQ 163
           FGHP PPAPCPCPLRQAWGSLDAL+GRLRAAFEE+GG PE NPFG RAVRLYLREVR+SQ
Sbjct: 78  FGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQ 137

Query: 164 AKARGIAYEKKKRKKSGMPPLKKNQPQ 191
           AKARGIAYEKK+RK+   PP   +  Q
Sbjct: 138 AKARGIAYEKKRRKR---PPTSSSSSQ 161

[Close]

BLAST of HG10015825 vs. ExPASy TrEMBL
Match: A0A6J1IPW9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=LOC111478381 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.4e-94
Identity = 179/207 (86.47%), Postives = 185/207 (89.37%), Query Frame = 0


Query: 1   MLAMEAASVVSSYSSAS---ASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDW 60
           MLAME+AS V+SYSSAS    S SDNHHH    YPLL P PPSPPPPALSRYESQKRRDW
Sbjct: 1   MLAMESASAVNSYSSASTTTTSTSDNHHH----YPLLEPAPPSPPPPALSRYESQKRRDW 60

Query: 61  NTFGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPL 120
           NTFGQYL+NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVH SCCPFFGHPQPPAPCPCPL
Sbjct: 61  NTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPL 120

Query: 121 RQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRK 180
           RQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVR+SQAKARGIAYE KKRK
Sbjct: 121 RQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KKRK 180

Query: 181 KSGMPPLKKNQ----PQPMPLLDHSAS 201
           KS M PLKK+Q     +PMPL DHSAS
Sbjct: 181 KSAMAPLKKHQRHAPDEPMPLTDHSAS 202

[Close]

BLAST of HG10015825 vs. ExPASy TrEMBL
Match: A0A6J1ED05 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN=LOC111433058 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.7e-92
Identity = 173/201 (86.07%), Postives = 179/201 (89.05%), Query Frame = 0


Query: 1   MLAMEAASVVSSYSSASASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDWNTF 60
           MLAME+ S     S+ + S SDN HHHHLQYPLL P PPSPPPPALSRYESQKRRDWNTF
Sbjct: 1   MLAMESVST----STTTTSTSDN-HHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTF 60

Query: 61  GQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPLRQA 120
           GQYL+NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVH SCCPFFGHPQPPAPCPCPLRQA
Sbjct: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSG 180
           WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVR+SQAKARGIAYEKKKRKKS 
Sbjct: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSA 180

Query: 181 MPPLKKNQPQ-PMPLLDHSAS 201
           M PLKK+Q   P    DHSAS
Sbjct: 181 MAPLKKHQRHAPDEPTDHSAS 196

[Close]

BLAST of HG10015825 vs. ExPASy TrEMBL
Match: A0A0A0KPA1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526250 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.6e-88
Identity = 168/195 (86.15%), Postives = 176/195 (90.26%), Query Frame = 0


Query: 1   MLAME--AASVVSSYSSASASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDWN 60
           MLAME  A+S V++Y+SAS + SDNH H    YPLL+P PPSPP PALSRYESQKRRDWN
Sbjct: 1   MLAMEVTASSAVTTYTSAS-TTSDNHPH----YPLLLPAPPSPPTPALSRYESQKRRDWN 60

Query: 61  TFGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPLR 120
           TFGQYL+NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVH S CPFFGHPQPPAPCPCPLR
Sbjct: 61  TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKK 180
           QAWGSLDALIGRLRAAFEENGG P+TNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKK
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKK 180

Query: 181 SGMPPLKKNQPQPMP 194
           SGM PLK N  QPMP
Sbjct: 181 SGMAPLKINHHQPMP 190

[Close]

BLAST of HG10015825 vs. ExPASy TrEMBL
Match: A0A5A7UB86 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009900 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 9.9e-88
Identity = 169/194 (87.11%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MLAMEAA-SVVSSYSSASASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDWNT 60
           MLAMEAA S V+SY+SAS + SDNH H    YPLL+P PPSPP PALSRYESQKRRDWNT
Sbjct: 1   MLAMEAASSAVTSYTSAS-TTSDNHLH----YPLLLPAPPSPPTPALSRYESQKRRDWNT 60

Query: 61  FGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPLRQ 120
           FGQYL+NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVH S CPFFGHPQPPAPCPCPLRQ
Sbjct: 61  FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKS 180
           AWGSLDALIGRLRAAFEENGG PETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKS
Sbjct: 121 AWGSLDALIGRLRAAFEENGGQPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKS 180

Query: 181 GMPPLKKNQPQPMP 194
            M  LK N  QPMP
Sbjct: 181 AMASLKINHHQPMP 189

[Close]

BLAST of HG10015825 vs. ExPASy TrEMBL
Match: A0A1S3AZK8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC103484288 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 9.9e-88
Identity = 169/194 (87.11%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MLAMEAA-SVVSSYSSASASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDWNT 60
           MLAMEAA S V+SY+SAS + SDNH H    YPLL+P PPSPP PALSRYESQKRRDWNT
Sbjct: 1   MLAMEAASSAVTSYTSAS-TTSDNHLH----YPLLLPAPPSPPTPALSRYESQKRRDWNT 60

Query: 61  FGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPLRQ 120
           FGQYL+NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVH S CPFFGHPQPPAPCPCPLRQ
Sbjct: 61  FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKS 180
           AWGSLDALIGRLRAAFEENGG PETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKS
Sbjct: 121 AWGSLDALIGRLRAAFEENGGQPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKS 180

Query: 181 GMPPLKKNQPQPMP 194
            M  LK N  QPMP
Sbjct: 181 AMASLKINHHQPMP 189

[Close]

BLAST of HG10015825 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 261.9 bits (668), Expect = 4.1e-70
Identity = 133/189 (70.37%), Postives = 145/189 (76.72%), Query Frame = 0


Query: 1   MLAMEAASVVSSYSSASASASDNHHHHHLQYPLLVPVPPSPPPPALSRYESQKRRDWNTF 60
           M+A  A +  +S SS+S+S     +                    LSRYE+QKRRDWNTF
Sbjct: 20  MIAAAATTTTTSSSSSSSSGGSGTNQ-------------------LSRYENQKRRDWNTF 79

Query: 61  GQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPLRQA 120
           GQYLRNHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVH   CPFFGHP PPAPC CPLRQA
Sbjct: 80  GQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQA 139

Query: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSG 180
           WGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREVR+SQAKARGI+YEKKKRK+  
Sbjct: 140 WGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP- 188

Query: 181 MPPLKKNQP 190
            PPL   QP
Sbjct: 200 PPPLPPAQP 188

[Close]

BLAST of HG10015825 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-68
Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 40  SPPPPALSRYESQKRRDWNTFGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHIS 99
           S P    SRYE+QKRRDWNTFGQYLRNHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVH +
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 100 CCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREV 159
            C F+GHP PPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 160 RESQAKARGIAYEKKKRKK 179
           R+ Q+KARG++YEKKKRK+
Sbjct: 166 RDMQSKARGVSYEKKKRKR 184

[Close]

BLAST of HG10015825 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 248.8 bits (634), Expect = 3.6e-66
Identity = 111/139 (79.86%), Postives = 126/139 (90.65%), Query Frame = 0


Query: 40  SPPPPALSRYESQKRRDWNTFGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHIS 99
           S PP   SRYESQKRRDWNTF QYL+NH+PPL LSRCSGAH++EFL+YLDQFGKTKVH++
Sbjct: 23  SSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVA 82

Query: 100 CCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREV 159
            CP+FGH QPP+PC CPL+QAWGSLDALIGRLRAA+EENGG P++NPF  RAVR+YLREV
Sbjct: 83  ACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREV 142

Query: 160 RESQAKARGIAYEKKKRKK 179
           RESQAKARGI YEKKKRK+
Sbjct: 143 RESQAKARGIPYEKKKRKR 161

[Close]

BLAST of HG10015825 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-64
Identity = 116/156 (74.36%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 43  PPALSRYESQKRRDWNTFGQYLRNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHISCCP 102
           PP+ SRYE+QKRRDWNTF QYLRNHRPPL+L  CSGAH+LEFLRYLDQFGKTKVH   C 
Sbjct: 20  PPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCA 79

Query: 103 FFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRES 162
           FFG P PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFG+RAVRL+LREVR+ 
Sbjct: 80  FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDF 139

Query: 163 QAKARGIAYEKKKR-----KKSGMPPLKKNQPQPMP 194
           QAKARG++YEKK++     K    PPL+  Q Q  P
Sbjct: 140 QAKARGVSYEKKRKRVNRQKPQTQPPLQLQQQQQQP 175

[Close]

BLAST of HG10015825 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 241.1 bits (614), Expect = 7.5e-64
Identity = 117/176 (66.48%), Postives = 140/176 (79.55%), Query Frame = 0


Query: 21  SDNHHHHHLQYPLLVPVPPS-PPPPALSRYESQKRRDWNTFGQYLRNHRPPLTLSRCSGA 80
           S NH++ +    L    P S   PP+ SRYE+QKRRDWNTF QYLRNH PPL+L+ CSGA
Sbjct: 5   SQNHNNRNPNTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGA 64

Query: 81  HILEFLRYLDQFGKTKVHISCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENG 140
           H+L+FLRYLDQFGKTKVH   C FFG P PPAPCPCPLRQAWGSLDALIGRLRAA+EENG
Sbjct: 65  HVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENG 124

Query: 141 GHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSGMPPLKKNQPQPMPLL 196
           G PET+PFG+R+VR++LREVR+ QAK+RG++YE KKRK+     + ++QPQ  P L
Sbjct: 125 GAPETSPFGSRSVRIFLREVRDFQAKSRGVSYE-KKRKRVNNKQITQSQPQSQPPL 179

The following BLAST results are available for this feature:

BLAST of HG10015825 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881876.1	1.6e-100	90.50	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]	[more]
XP_022978370.1	5.0e-94	86.47	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima]	[more]
XP_023544575.1	1.5e-93	86.76	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]	[more]
KAG6581495.1	4.3e-93	86.07	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
XP_022925731.1	3.6e-92	86.07	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata]	[more]

BLAST of HG10015825 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2XAV5	1.2e-69	78.48	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	1.2e-69	78.48	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
Q9LW68	5.8e-69	70.37	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q7XDD0	2.9e-68	86.03	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
A2YG32	4.9e-68	82.31	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]

BLAST of HG10015825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPW9	2.4e-94	86.47	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ED05	1.7e-92	86.07	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0KPA1	2.6e-88	86.15	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526250 PE=3 S...	[more]
A0A5A7UB86	9.9e-88	87.11	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3AZK8	9.9e-88	87.11	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of HG10015825 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23290.2	4.1e-70	70.37	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.7e-68	84.17	Protein of unknown function (DUF640)	[more]
AT1G07090.1	3.6e-66	79.86	Protein of unknown function (DUF640)	[more]
AT5G28490.1	1.2e-64	74.36	Protein of unknown function (DUF640)	[more]
AT3G04510.1	7.5e-64	66.48	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 41..161 e-value: 6.5E-66 score: 220.2
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 48..175 score: 83.447662
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..200
None	No IPR available	PANTHER	PTHR31165:SF65	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-LIKE	coord: 4..182
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 4..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015825.1	HG10015825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus