HG10015735 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015735
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Sigma factor binding protein 1
Location	Chr02: 29472211 .. 29472645 (-)
RNA-Seq Expression	HG10015735
Synteny	HG10015735

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTAACCGGCAAAAAACAGGCAAAAAGAAGCAAGAAATCTGCGGCGGCCGATTTCAAAGTCGTGTACATTTCAAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTCCGATCTCTCGTTCAGAAACTCACCGGTCAGGATTCCGATGCCGAGAGGTTCATGGAACTGATCGCCTCCGCTGCTAGTGATCGGAATCTTCGATCGTCAGCGTCGTTCCTCGACTACCAACTCCTCGGCGACGACGATCTAATGGTGGCAGGAAAGGTCGAAACGGCGGCGTATGAATCGTCGGTTGCGGCTCTGCCGCCGCCGGATGATTTGGCGGTTCTGCAGAATTTCGATGCAAGTTTTGCAGAAATGTTCCATGGCTTTTGGTATGATTCTTCTACGGCACAAACTGAGGTGCCAGGTTTAAGTGCACTGCTGTAG

mRNA sequence

ATGAATGTAACCGGCAAAAAACAGGCAAAAAGAAGCAAGAAATCTGCGGCGGCCGATTTCAAAGTCGTGTACATTTCAAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTCCGATCTCTCGTTCAGAAACTCACCGGTCAGGATTCCGATGCCGAGAGGTTCATGGAACTGATCGCCTCCGCTGCTAGTGATCGGAATCTTCGATCGTCAGCGTCGTTCCTCGACTACCAACTCCTCGGCGACGACGATCTAATGGTGGCAGGAAAGGTCGAAACGGCGGCGTATGAATCGTCGGTTGCGGCTCTGCCGCCGCCGGATGATTTGGCGGTTCTGCAGAATTTCGATGCAAGTTTTGCAGAAATGTTCCATGGCTTTTGGTATGATTCTTCTACGGCACAAACTGAGGTGCCAGGTTTAAGTGCACTGCTGTAG

Coding sequence (CDS)

ATGAATGTAACCGGCAAAAAACAGGCAAAAAGAAGCAAGAAATCTGCGGCGGCCGATTTCAAAGTCGTGTACATTTCAAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTCCGATCTCTCGTTCAGAAACTCACCGGTCAGGATTCCGATGCCGAGAGGTTCATGGAACTGATCGCCTCCGCTGCTAGTGATCGGAATCTTCGATCGTCAGCGTCGTTCCTCGACTACCAACTCCTCGGCGACGACGATCTAATGGTGGCAGGAAAGGTCGAAACGGCGGCGTATGAATCGTCGGTTGCGGCTCTGCCGCCGCCGGATGATTTGGCGGTTCTGCAGAATTTCGATGCAAGTTTTGCAGAAATGTTCCATGGCTTTTGGTATGATTCTTCTACGGCACAAACTGAGGTGCCAGGTTTAAGTGCACTGCTGTAG

Protein sequence

MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSASFLDYQLLGDDDLMVAGKVETAAYESSVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL

Homology

[Close]

BLAST of HG10015735 vs. NCBI nr
Match: XP_038892750.1 (sigma factor binding protein 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 251.9 bits (642), Expect = 3.3e-63
Identity = 135/146 (92.47%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIA 60
           MNVTGKK  KRSKKSAAA+FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIA
Sbjct: 1   MNVTGKKHPKRSKKSAAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIA 60

Query: 61  SAASDRNLRSSAS--FLDYQLLGDDDLMVAGKVETAAYESSVAALPPPDDLAVLQNFDAS 120
           SAASDRNL+SSAS  FLDYQLLGDDDL+V+GKVETAAYESSVAALPP DDLAVLQNFDAS
Sbjct: 61  SAASDRNLQSSASAPFLDYQLLGDDDLLVSGKVETAAYESSVAALPPLDDLAVLQNFDAS 120

Query: 121 FAEMFHGFWYDSSTAQTEVPGLSALL 145
           FAEMFHGFWYDSSTAQT +PGLSALL
Sbjct: 121 FAEMFHGFWYDSSTAQTMMPGLSALL 146

[Close]

BLAST of HG10015735 vs. NCBI nr
Match: BAI52954.1 (sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 243.8 bits (621), Expect = 9.0e-61
Identity = 129/146 (88.36%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIA 60
           MNVTGKKQAKRS+KSAAADFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFMEL A
Sbjct: 1   MNVTGKKQAKRSRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELTA 60

Query: 61  SAASDRNLRSSAS--FLDYQLLGDDDLMVAGKVETAAYESSVAALPPPDDLAVLQNFDAS 120
           SAASDRNL+SSAS  F DYQLLGDDDL+VAGKVETAAYESSVAALPPPDDLAVL N DAS
Sbjct: 61  SAASDRNLQSSASATFFDYQLLGDDDLVVAGKVETAAYESSVAALPPPDDLAVLHNLDAS 120

Query: 121 FAEMFHGFWYDSSTAQTEVPGLSALL 145
           F  MFHGFW+DS TAQ E+PGL+ALL
Sbjct: 121 FGGMFHGFWFDSFTAQAEMPGLNALL 146

[Close]

BLAST of HG10015735 vs. NCBI nr
Match: XP_016900221.1 (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo] >KAA0034768.1 sigma factor binding protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 6.9e-45
Identity = 108/146 (73.97%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIA 60
           MNVTGKKQAKRSKKS AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME+ A
Sbjct: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-A 60

Query: 61  SAASDRNLRS--SASFLDYQLLGDDDLMVAGKVETAAYESSVAALPPPDDLAVLQNFDAS 120
           S ASD N +S  SASFLD QL+G++D++V GK E A        + P DDL  LQN D +
Sbjct: 61  SGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAA-----FGGVNPADDLVFLQNLDGN 120

Query: 121 FAEMFHGFWYDSSTAQTEVPGLSALL 145
           FAEMF+GFW+DSSTAQTE+ GLSALL
Sbjct: 121 FAEMFNGFWHDSSTAQTEMTGLSALL 140

[Close]

BLAST of HG10015735 vs. NCBI nr
Match: KAG6573793.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-44
Identity = 113/156 (72.44%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 1   MNVTGKKQAK-RSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           M++T KKQ+K RS+KSAAADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  ASAASD--RNLRSSAS---FLDYQLLGDDDL------MVAGKVETAAYESSVAALPPPDD 120
           A+AAS    NL+SS S   FLDYQLLGDDDL      +VAGK+ETAAY+SSVA   PP+D
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVA---PPED 120

Query: 121 LAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL 145
           L V++NFDASFAEMF  F +DSS+ QTE+PG SALL
Sbjct: 121 L-VMENFDASFAEMFQSFLHDSSSTQTEMPGFSALL 152

[Close]

BLAST of HG10015735 vs. NCBI nr
Match: XP_022945563.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG7012870.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-44
Identity = 113/156 (72.44%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 1   MNVTGKKQAK-RSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           M++T KKQ+K RS+KSAAADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  ASAASD--RNLRSSAS---FLDYQLLGDDDL------MVAGKVETAAYESSVAALPPPDD 120
           A+AAS    NL+SS S   FLDYQLLGDDDL      +VAGK+ETAAY+SSVA   PP+D
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVA---PPED 120

Query: 121 LAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL 145
           L V++NFDASFAEMF  F +DSS+ QTE+PG SALL
Sbjct: 121 L-VMENFDASFAEMFQSFLHDSSSTQTEMPGFSALL 152

[Close]

BLAST of HG10015735 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.0e-06
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 6   KKQAKRSKKSAAAD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAA 65
           +K  K+ KK+ + +   KV YIS+PM+V+T ASKFR LVQ+LTGQD+   +   + + ++
Sbjct: 24  RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 66  SDRNLRSSASFLDYQLLGDDDLMVAGKVETAAYESSVAALPPPDDLAVLQNFDASFAEMF 125
            D NL   A  L  ++L  +     G+ ++  YE   A     +D+ +     A F+  F
Sbjct: 84  DDHNLSPPAENLAPRVLHQEPF---GERDSDCYEPLNA-----EDMFLPDQMSAGFSGFF 141

Query: 126 HGFWYD 130
              +Y+
Sbjct: 144 SNGFYN 141

[Close]

BLAST of HG10015735 vs. ExPASy TrEMBL
Match: D1MWZ4 (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=CitSIB PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.4e-61
Identity = 129/146 (88.36%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIA 60
           MNVTGKKQAKRS+KSAAADFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFMEL A
Sbjct: 1   MNVTGKKQAKRSRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELTA 60

Query: 61  SAASDRNLRSSAS--FLDYQLLGDDDLMVAGKVETAAYESSVAALPPPDDLAVLQNFDAS 120
           SAASDRNL+SSAS  F DYQLLGDDDL+VAGKVETAAYESSVAALPPPDDLAVL N DAS
Sbjct: 61  SAASDRNLQSSASATFFDYQLLGDDDLVVAGKVETAAYESSVAALPPPDDLAVLHNLDAS 120

Query: 121 FAEMFHGFWYDSSTAQTEVPGLSALL 145
           F  MFHGFW+DS TAQ E+PGL+ALL
Sbjct: 121 FGGMFHGFWFDSFTAQAEMPGLNALL 146

[Close]

BLAST of HG10015735 vs. ExPASy TrEMBL
Match: A0A5A7SVU6 (Sigma factor binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007920 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.3e-45
Identity = 108/146 (73.97%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIA 60
           MNVTGKKQAKRSKKS AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME+ A
Sbjct: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-A 60

Query: 61  SAASDRNLRS--SASFLDYQLLGDDDLMVAGKVETAAYESSVAALPPPDDLAVLQNFDAS 120
           S ASD N +S  SASFLD QL+G++D++V GK E A        + P DDL  LQN D +
Sbjct: 61  SGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAA-----FGGVNPADDLVFLQNLDGN 120

Query: 121 FAEMFHGFWYDSSTAQTEVPGLSALL 145
           FAEMF+GFW+DSSTAQTE+ GLSALL
Sbjct: 121 FAEMFNGFWHDSSTAQTEMTGLSALL 140

[Close]

BLAST of HG10015735 vs. ExPASy TrEMBL
Match: A0A1S4DW56 (sigma factor binding protein 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103489524 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.3e-45
Identity = 108/146 (73.97%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 1   MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIA 60
           MNVTGKKQAKRSKKS AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME+ A
Sbjct: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-A 60

Query: 61  SAASDRNLRS--SASFLDYQLLGDDDLMVAGKVETAAYESSVAALPPPDDLAVLQNFDAS 120
           S ASD N +S  SASFLD QL+G++D++V GK E A        + P DDL  LQN D +
Sbjct: 61  SGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAA-----FGGVNPADDLVFLQNLDGN 120

Query: 121 FAEMFHGFWYDSSTAQTEVPGLSALL 145
           FAEMF+GFW+DSSTAQTE+ GLSALL
Sbjct: 121 FAEMFNGFWHDSSTAQTEMTGLSALL 140

[Close]

BLAST of HG10015735 vs. ExPASy TrEMBL
Match: A0A6J1G190 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111449759 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.7e-45
Identity = 113/156 (72.44%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 1   MNVTGKKQAK-RSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           M++T KKQ+K RS+KSAAADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  ASAASD--RNLRSSAS---FLDYQLLGDDDL------MVAGKVETAAYESSVAALPPPDD 120
           A+AAS    NL+SS S   FLDYQLLGDDDL      +VAGK+ETAAY+SSVA   PP+D
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVA---PPED 120

Query: 121 LAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL 145
           L V++NFDASFAEMF  F +DSS+ QTE+PG SALL
Sbjct: 121 L-VMENFDASFAEMFQSFLHDSSSTQTEMPGFSALL 152

[Close]

BLAST of HG10015735 vs. ExPASy TrEMBL
Match: A0A6J1HP65 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111466446 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.2e-44
Identity = 112/156 (71.79%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 1   MNVTGKKQAK-RSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60
           M++T K+Q+K RS+KSAAADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI
Sbjct: 1   MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  ASAASD--RNLRSSAS---FLDYQLLGDDDL------MVAGKVETAAYESSVAALPPPDD 120
           A+AAS    NL+SS S   FLDYQLLGDDDL      +VAGK+ETAAY+SSVA   PP+D
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVA---PPED 120

Query: 121 LAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL 145
           L V+QNFDASFAEMF  F ++SS+ QTE+PG SALL
Sbjct: 121 L-VMQNFDASFAEMFQSFLHESSSTQTEMPGFSALL 152

[Close]

BLAST of HG10015735 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-07
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 6   KKQAKRSKKSAAAD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAA 65
           +K  K+ KK+ + +   KV YIS+PM+V+T ASKFR LVQ+LTGQD+   +   + + ++
Sbjct: 24  RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 66  SDRNLRSSASFLDYQLLGDDDLMVAGKVETAAYESSVAALPPPDDLAVLQNFDASFAEMF 125
            D NL   A  L  ++L  +     G+ ++  YE   A     +D+ +     A F+  F
Sbjct: 84  DDHNLSPPAENLAPRVLHQEPF---GERDSDCYEPLNA-----EDMFLPDQMSAGFSGFF 141

Query: 126 HGFWYD 130
              +Y+
Sbjct: 144 SNGFYN 141

[Close]

BLAST of HG10015735 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.7e-04
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 10 KRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS 51
          KR   +     KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Sbjct: 27 KRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDA 67

The following BLAST results are available for this feature:

BLAST of HG10015735 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892750.1	3.3e-63	92.47	sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]	[more]
BAI52954.1	9.0e-61	88.36	sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]	[more]
XP_016900221.1	6.9e-45	73.97	PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo] >KA...	[more]
KAG6573793.1	1.2e-44	72.44	Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_022945563.1	1.2e-44	72.44	sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG7012...	[more]

BLAST of HG10015735 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	3.0e-06	32.54	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of HG10015735 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
D1MWZ4	4.4e-61	88.36	Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN...	[more]
A0A5A7SVU6	3.3e-45	73.97	Sigma factor binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S4DW56	3.3e-45	73.97	sigma factor binding protein 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1G190	5.7e-45	72.44	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HP65	2.2e-44	71.79	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of HG10015735 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	2.1e-07	32.54	sigma factor binding protein 1	[more]
AT2G41180.1	1.7e-04	56.10	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 25..51 e-value: 4.7E-12 score: 45.2
None	No IPR available	PANTHER	PTHR33624:SF14	OS07G0687400 PROTEIN	coord: 3..98
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 3..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015735.1	HG10015735.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0006952	defense response
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity