HG10015718 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015718
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	F-box protein SKIP5
Location	Chr02: 29232997 .. 29236808 (+)
RNA-Seq Expression	HG10015718
Synteny	HG10015718

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCGAGTGGTAAAGAACCAGAGCCGGGTCGCCATAGTTTCGATGGAAGAAAACAAGCAAAGAAAGTGGAAAAGAAAAGGCACTTCATCCTCCTCGCCTTGTATTAACAATTTGGACGATGGCTGTCTAATGCATATTTTCAGCTTCCTTTCCCCCATACCAGGTACCTCTCTCTCACTCTCTCTTCAGGGGTGCGTCATATGTTTCGATTTGTTGTCTGAATGTCTATTCTTTCAATTTTTAGGATTTCTAATTGAGAGTTTCTTTCTGTTCCCTTCTCCAATTGCTTCTTTTGGCTGAAATTTAAGGGTTCTGCTGTTTATTGTGCAAATTTGGGTGGTTTGCATTTGCTGCAAAGGAAAAATGAAAAAAATGAAACGCTGTGTCAAAAACCATGAAAGAGTAATTTTGCAATCTTTTGGGTATTTCTGGAAATGGATTGTGAGAAGAATTTCAATTGAAATTTCGGGTTTGACGTGAGTTGGGGATTACTTTTTTAATGTATAAAGTGGGCATGTATTTGTTTCAGCATATCTAAATCGAAAAAAAAAAAAAAACTTATTTGAATAGATGGAATGCTTAGCTTCTTTGGGTTGGTTCTACCGGAGTCTATAATTGACCCTTATTAGTTTTCATTATGTGCGGTTTAATAGAATTGATTCTGAAGTGGGAAGTTCTTTCTTTGGACTTTGGATATGAATCGGTTAGAAACCATCGTGGGTTGACCTAGTGGTAGTGAGAACATAAAAAAAAAAAGCCAAATTGCTAAAGCATCATGAGTTTAATCTATGGTGGCCACTTACCTAGGATTTAATGTCCTAGGAAACTTCCTTGACATCCAAATGTTGTAGAGTTAGGTGGGTTTTCCTTAGGAGAAAAGGATATGAATCGGTTGGATATAGTAAATATATTGGTACGTGATACAGAGGAGTCGTTTCAAAATTTAAAAAGATATGTGATACAGAGGAGAATCTTCTTGAGTTGTAAACAAATTGTTCCTCCTCTGTCGCTTCTTCTTTTTCAATTTGATGACCTAGCTTAGTTTTTTTTTTGGTTTGGGGGGGGGGGGGGGGTATCTGGTTGGAAAAAGGGTAAGAATTATTTTGGAGACAAAAGTGAAGATGTTGATGAAGGGGCTAAATAGTGTACTTACTGTTGTTCTAAGAATGTCATTTTATTACATTTGTGTGTATCTTTTGCTTCTTCTCTATTCTAGTGAGCAAATTTTTTATCATTAGCCTAGTGAAGTTGTAATTAAGTGGACCCGCCTGTTTTTTCCATGGAGTTTCTGCCTTTTCTGTCACTTTTGCCATTGAGTTTGCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTACTTGGCATGTCATCCTAGGCTGTGGCTGCGAGTAGAACGATCTATTAAAGATTTATCTGAGCCAGGAGTTTTCCCAACCATTGAGGCAGCCGTTGCTGCTGCTAGGTAAGTTTTGCATGTTTATGTTCATGTTTCTTAAGAGAGAAAATGACTAGAGTAAGTTGTTTATAGAGGCTGAATGATTTTGTCCTACATAGGCCTGGTGACACCATACTTATTGCAACAGGTGGAGTTCATTCTGCCTCTAATATTCAGATAACAAAGCCACTTTGCCTGGTAAATTCTATTTCCCCCCTCTTTTAGTTTTGGCTGCTTGGCAGTGAAATTTTACTCTTAGATCTTAATATATGGTTTAAATGTCATCCAATTGTCCTGCTTTGCAGAAATCATGTCTAGTCTGTGAATAATTTAAGTACCCTTCAAGACAAAAAGTGTCTTGTTATATATGAGCTTATTAATTCATAACTAAGAAAAGTGAACTGTGTTGTTTCTTTTCAAAAAGAAAAGAAATGTGATCAGCGTCTCTAAAAGGTCGTCGCATAAAGCTAAAATTTGGGTTTATGTTATTCAGCTTTAAAAATGATGTTGGCAGAATTTTCCTTTTCTTGTTGTTAAGAAACTAAGAAATGACTGGATTGAACAACCTCAACCCTAGCTACAAATTATAACTGGAGTCTTAGGGCCCATTTGGATTGACTATAGAAAAAAATGTTTTTCAAAAAACTCATTTTTATTTAAACTCTTTTGACAAAAAGGGTTTAAAATACACTTCAAAAGCTATTTTGAGTGGTTGCCAAGCACTCCAATTTTTTTCAAATTGACTTATTTTTTAAATTAAACACTTGAAAACGTATTCCAAACACACCCTAAAAAAAAGGTTGCTCTGGGGGAGCTAGTTAGCTATTTGGGTTCTGCTCTGTGGTTTTAAAGTGAATCTTTCTGTGGCTTGGCCCTGCATTTGCAATTCGAATTAAGTACTTGTTTGAGGAGGAAATATTATTAAGCTATTTCCCTGTACATGCTTTCAAATATTGGTGAAACGTGAAATAATGGATTCATGGTCCAGTCGTGCTCATTATTTGGACTTTATGAGCTCTTAACTTTAAGATTTTAGCACCGTGATACCTCAATTTATTCCATAATGTTATAGATTTTCTGCTTTTATGGGGCTTAATTTATGATAGAAGCCAAGCCAATTTGTGTGTGTGTTTATGGTAGAAGTGGTGAAAGACTCCTTTCATAAAGAACTTAAGTTTCACTATTTTCCATAATTTTATCTTAATTTATTTTTCAGATTGGTGGAGGTGAGCTTCCTGAGGAGACAACACTTTTCTGTACCCGTGGTTCGGAGAGGTACATAACTGATAGCTAGTAATGTAATTTGTACTAATCGTGAATCCTATAGGTTTTTGTTAGGACACTGAATATATTGAAATGTAAAGATGAAGAAATACAAGATAAACCAAGTTCAAGGTACTTGGGAACCTCCCTCTTGAGCATTACTAACTCAAGCCTAAACCCACTCAATGCCTACCTTCACTCACTCCCCCTCCCCCTCCTATTTATAGCAATATTTAGTAACTAACTTTCTATCTAATCATCCTTATACCTCTTACTAATACCATACTAATGTACTTATCTAGGTACTTACAGTTTTCTGCCTCTTAACATTTCCAACAGATCATTTATCACGTCATCCATCTCGGCTTTCACTCACTGGTGTCCTCTAATCAAATTTGTTCTTTACTTCTAGTGACTTCTCTTGATTAACATATTCTTTCATCATTGGCTGTATTGCATACCATTTTGGTCTTTACTAGTATTTTGTCAGCTAATATTCCCTCACCCAATTTTCATCTTAGGCAACCTATGGGGTTCAATACATACATGCCTGTGTTAGCATATACAATACACACATTCGAACCCCATGTCAATTATATGTTAAAAACAAAATAAAGAGAGCTAAAATATATATTTTGAAAGTTGAAGGACAAACATTCTGGAGATCTTGAAAGTTTAAAGGAACCAAAGGAGGATTTTTATGATTTTTGAAGTCAACTTATTATGGACTTCCCGTTTCTTCTTAACAGTGCTTTGGAGTTCCTGTCTACCAGTAAACTTTCTAACTTAACAGTCAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTGATTATAGATGGATGTGTCCTCCAATGTGAATCAAACCCTTTGGATTACCTATCATGCCCCATTGTTTGTACAGCAAGTCGAGATAAGTTATTGCCTTCCTCAGTGAAGGGTGGTTATACACATGGTGTTTCTGTCTCACACACTCGTATTGAGGGTGGTGCCAAGGCTGTCCTAACGAGTGACGACCTGGCATTACAGCACGTTCGAGTTATTTATGCTCGAACGGCTCTGTTCTTTTGGTTTGATGTCGAATACAAGTTATAA

mRNA sequence

ATGAGCCGAGTGGTAAAGAACCAGAGCCGGGTCGCCATAGTTTCGATGGAAGAAAACAAGCAAAGAAAGTGGAAAAGAAAAGGCACTTCATCCTCCTCGCCTTGTATTAACAATTTGGACGATGGCTGTCTAATGCATATTTTCAGCTTCCTTTCCCCCATACCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTACTTGGCATGTCATCCTAGGCTGTGGCTGCGAGTAGAACGATCTATTAAAGATTTATCTGAGCCAGGAGTTTTCCCAACCATTGAGGCAGCCGTTGCTGCTGCTAGGCCTGGTGACACCATACTTATTGCAACAGGTGGAGTTCATTCTGCCTCTAATATTCAGATAACAAAGCCACTTTGCCTGATTGGTGGAGGTGAGCTTCCTGAGGAGACAACACTTTTCTGTACCCGTGGTTCGGAGAGTGCTTTGGAGTTCCTGTCTACCAGTAAACTTTCTAACTTAACAGTCAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTGATTATAGATGGATGTGTCCTCCAATGTGAATCAAACCCTTTGGATTACCTATCATGCCCCATTGTTTGTACAGCAAGTCGAGATAAGTTATTGCCTTCCTCAGTGAAGGGTGGTTATACACATGGTGTTTCTGTCTCACACACTCGTATTGAGGGTGGTGCCAAGGCTGTCCTAACGAGTGACGACCTGGCATTACAGCACGTTCGAGTTATTTATGCTCGAACGGCTCTGTTCTTTTGGTTTGATGTCGAATACAAGTTATAA

Coding sequence (CDS)

ATGAGCCGAGTGGTAAAGAACCAGAGCCGGGTCGCCATAGTTTCGATGGAAGAAAACAAGCAAAGAAAGTGGAAAAGAAAAGGCACTTCATCCTCCTCGCCTTGTATTAACAATTTGGACGATGGCTGTCTAATGCATATTTTCAGCTTCCTTTCCCCCATACCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTACTTGGCATGTCATCCTAGGCTGTGGCTGCGAGTAGAACGATCTATTAAAGATTTATCTGAGCCAGGAGTTTTCCCAACCATTGAGGCAGCCGTTGCTGCTGCTAGGCCTGGTGACACCATACTTATTGCAACAGGTGGAGTTCATTCTGCCTCTAATATTCAGATAACAAAGCCACTTTGCCTGATTGGTGGAGGTGAGCTTCCTGAGGAGACAACACTTTTCTGTACCCGTGGTTCGGAGAGTGCTTTGGAGTTCCTGTCTACCAGTAAACTTTCTAACTTAACAGTCAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTGATTATAGATGGATGTGTCCTCCAATGTGAATCAAACCCTTTGGATTACCTATCATGCCCCATTGTTTGTACAGCAAGTCGAGATAAGTTATTGCCTTCCTCAGTGAAGGGTGGTTATACACATGGTGTTTCTGTCTCACACACTCGTATTGAGGGTGGTGCCAAGGCTGTCCTAACGAGTGACGACCTGGCATTACAGCACGTTCGAGTTATTTATGCTCGAACGGCTCTGTTCTTTTGGTTTGATGTCGAATACAAGTTATAA

Protein sequence

MSRVVKNQSRVAIVSMEENKQRKWKRKGTSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASRDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSDDLALQHVRVIYARTALFFWFDVEYKL

Homology

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BLAST of HG10015718 vs. NCBI nr
Match: XP_004142419.1 (F-box protein SKIP5 isoform X1 [Cucumis sativus] >KGN52308.1 hypothetical protein Csa_008966 [Cucumis sativus])

HSP 1 Score: 527.7 bits (1358), Expect = 5.8e-146
Identity = 259/267 (97.00%), Postives = 264/267 (98.88%), Query Frame = 0


Query: 1   MSRVVKNQSRVAIVSMEENKQRKWKRKGTSSSSPCINNLDDGCLMHIFSFLSPIPDRYNT 60
           MSRVVK+QSRVAIVSMEENKQRKWKRKGTSSSSP +N+LDDGCLMHIFSFLSPIPDRYNT
Sbjct: 6   MSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNT 65

Query: 61  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 120
           ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS
Sbjct: 66  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 125

Query: 121 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 180
           NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL
Sbjct: 126 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 185

Query: 181 IIDGCVLQCESNPLDYLSCPIVCTASRDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 240
           I+DGCVLQCESNPLDYLSCPIVCTAS DKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS
Sbjct: 186 IVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 245

Query: 241 DDLALQHVRVIYARTALFFWFDVEYKL 268
           +DL LQHVRVIYARTALFFWFDVEYKL
Sbjct: 246 EDLTLQHVRVIYARTALFFWFDVEYKL 272

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BLAST of HG10015718 vs. NCBI nr
Match: XP_008446937.1 (PREDICTED: F-box protein SKIP5 [Cucumis melo] >KAA0034751.1 F-box protein SKIP5 [Cucumis melo var. makuwa] >TYK09305.1 F-box protein SKIP5 [Cucumis melo var. makuwa])

HSP 1 Score: 524.2 bits (1349), Expect = 6.4e-145
Identity = 257/267 (96.25%), Postives = 263/267 (98.50%), Query Frame = 0


Query: 1   MSRVVKNQSRVAIVSMEENKQRKWKRKGTSSSSPCINNLDDGCLMHIFSFLSPIPDRYNT 60
           MSRVVK+QSRVAIVSMEENKQRKWKRKGTSSSSP +N+LDDGCLMHIFSFLSPIPDRYNT
Sbjct: 6   MSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNT 65

Query: 61  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 120
           ALVCHRWRYLACHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS
Sbjct: 66  ALVCHRWRYLACHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 125

Query: 121 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 180
           NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL
Sbjct: 126 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 185

Query: 181 IIDGCVLQCESNPLDYLSCPIVCTASRDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 240
           I+DGCVLQCESNPLDYLSCPIVCTAS DKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS
Sbjct: 186 IVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 245

Query: 241 DDLALQHVRVIYARTALFFWFDVEYKL 268
           +DL LQHVRVIYARTAL FWFDVEYKL
Sbjct: 246 EDLTLQHVRVIYARTALLFWFDVEYKL 272

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BLAST of HG10015718 vs. NCBI nr
Match: XP_038889674.1 (F-box protein SKIP5 [Benincasa hispida])

HSP 1 Score: 519.2 bits (1336), Expect = 2.1e-143
Identity = 256/267 (95.88%), Postives = 261/267 (97.75%), Query Frame = 0


Query: 1   MSRVVKNQSRVAIVSMEENKQRKWKRKGTSSSSPCINNLDDGCLMHIFSFLSPIPDRYNT 60
           MSRVV++QSRVAIVSMEE+KQRKWKRKGTS+SSP INNLDDGCLMHIFSFLSP+PDRYNT
Sbjct: 1   MSRVVEDQSRVAIVSMEESKQRKWKRKGTSTSSPSINNLDDGCLMHIFSFLSPMPDRYNT 60

Query: 61  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 120
           ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS
Sbjct: 61  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 120

Query: 121 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 180
           NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL
Sbjct: 121 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 180

Query: 181 IIDGCVLQCESNPLDYLSCPIVCTASRDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 240
           IIDGCVLQCESNPLDYLSCPIVCTA  DKLLPSSV  GYTHGVSVSHTRIEGGAKAVLT 
Sbjct: 181 IIDGCVLQCESNPLDYLSCPIVCTACPDKLLPSSVSRGYTHGVSVSHTRIEGGAKAVLTG 240

Query: 241 DDLALQHVRVIYARTALFFWFDVEYKL 268
           DDLALQHVRVIYARTALFFWFDVEYKL
Sbjct: 241 DDLALQHVRVIYARTALFFWFDVEYKL 267

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BLAST of HG10015718 vs. NCBI nr
Match: XP_022139176.1 (F-box protein SKIP5 [Momordica charantia])

HSP 1 Score: 481.1 bits (1237), Expect = 6.2e-132
Identity = 240/256 (93.75%), Postives = 245/256 (95.70%), Query Frame = 0


Query: 14  VSMEENKQRKWKRKGT--SSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 73
           VS++E KQRKWKRKGT  SSSS  INNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 8   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 67

Query: 74  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 133
           CHPRLWLRVERSIKDLSE GVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 68  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 127

Query: 134 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 193
           GGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES
Sbjct: 128 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 187

Query: 194 NPLDYLSCPIVCTASRDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSDDLALQHVRVI 253
           NPLDYLSCPIVC+A+ DKLLPSSVKGGYT GVSVS TRIEGGAKAVLTS+DLALQHVRVI
Sbjct: 188 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 247

Query: 254 YARTALFFWFDVEYKL 268
           YARTALFFWFDVEY L
Sbjct: 248 YARTALFFWFDVEYNL 263

[Close]

BLAST of HG10015718 vs. NCBI nr
Match: XP_022966937.1 (F-box protein SKIP5 isoform X1 [Cucurbita maxima])

HSP 1 Score: 476.5 bits (1225), Expect = 1.5e-130
Identity = 233/253 (92.09%), Postives = 241/253 (95.26%), Query Frame = 0


Query: 15  SMEENKQRKWKRKGTSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP 74
           +ME+NKQRKWKRKGT SSS  INNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP
Sbjct: 6   TMEDNKQRKWKRKGTPSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP 65

Query: 75  RLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGG 134
           RLWLRVERSIKDLSE GVFPT+EAAVAAARPGDTILIATGGVHS SNIQITKPLCLIGGG
Sbjct: 66  RLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGGVHSVSNIQITKPLCLIGGG 125

Query: 135 ELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPL 194
           ELPEETTLFC+RGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPL
Sbjct: 126 ELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPL 185

Query: 195 DYLSCPIVCTASRDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSDDLALQHVRVIYAR 254
           DYLSCPIVCTAS DKL  SSVKGGY  GVSVS TRIEGGAKA+LTS+DLAL+HVRVIYAR
Sbjct: 186 DYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLALRHVRVIYAR 245

Query: 255 TALFFWFDVEYKL 268
           TALFFWFDVE+KL
Sbjct: 246 TALFFWFDVEHKL 258

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BLAST of HG10015718 vs. ExPASy Swiss-Prot
Match: Q94FT2 (F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 3.7e-95
Identity = 172/255 (67.45%), Postives = 201/255 (78.82%), Query Frame = 0


Query: 21  QRKWKRKGTSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 80
           + K K++    S   +NNLDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHPRLWLRV
Sbjct: 20  ESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 79

Query: 81  ERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEET 140
           +R +KDLS+PGVF  IE+AV+AARPGDTILI  GG +  SNIQI KPLCL+GGGE+P+ET
Sbjct: 80  DRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGGEIPDET 139

Query: 141 TLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCP 200
           TL C RGS+SALE LST KL+NLTVKAELGCCLLHR GRL IDGCVLQCE+NPLD+LSCP
Sbjct: 140 TLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSCP 199

Query: 201 IVCTASRDKL--------LPSSVKGGY-THGVSVSHTRIEGGAKAVLTSDDLALQHVRVI 260
           IV TA  + +        +  +V G    + V+V  TRIEGGAKAV T  DL LQ VRV+
Sbjct: 200 IVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRVM 259

Query: 261 YARTALFFWFDVEYK 267
           Y++  L+FWFDV+Y+
Sbjct: 260 YSKAYLYFWFDVDYE 274

[Close]

BLAST of HG10015718 vs. ExPASy TrEMBL
Match: A0A0A0KRR7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 2.8e-146
Identity = 259/267 (97.00%), Postives = 264/267 (98.88%), Query Frame = 0


Query: 1   MSRVVKNQSRVAIVSMEENKQRKWKRKGTSSSSPCINNLDDGCLMHIFSFLSPIPDRYNT 60
           MSRVVK+QSRVAIVSMEENKQRKWKRKGTSSSSP +N+LDDGCLMHIFSFLSPIPDRYNT
Sbjct: 6   MSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNT 65

Query: 61  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 120
           ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS
Sbjct: 66  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 125

Query: 121 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 180
           NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL
Sbjct: 126 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 185

Query: 181 IIDGCVLQCESNPLDYLSCPIVCTASRDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 240
           I+DGCVLQCESNPLDYLSCPIVCTAS DKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS
Sbjct: 186 IVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 245

Query: 241 DDLALQHVRVIYARTALFFWFDVEYKL 268
           +DL LQHVRVIYARTALFFWFDVEYKL
Sbjct: 246 EDLTLQHVRVIYARTALFFWFDVEYKL 272

[Close]

BLAST of HG10015718 vs. ExPASy TrEMBL
Match: A0A5A7SZI1 (F-box protein SKIP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G003020 PE=4 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 3.1e-145
Identity = 257/267 (96.25%), Postives = 263/267 (98.50%), Query Frame = 0


Query: 1   MSRVVKNQSRVAIVSMEENKQRKWKRKGTSSSSPCINNLDDGCLMHIFSFLSPIPDRYNT 60
           MSRVVK+QSRVAIVSMEENKQRKWKRKGTSSSSP +N+LDDGCLMHIFSFLSPIPDRYNT
Sbjct: 6   MSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNT 65

Query: 61  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 120
           ALVCHRWRYLACHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS
Sbjct: 66  ALVCHRWRYLACHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 125

Query: 121 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 180
           NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL
Sbjct: 126 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 185

Query: 181 IIDGCVLQCESNPLDYLSCPIVCTASRDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 240
           I+DGCVLQCESNPLDYLSCPIVCTAS DKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS
Sbjct: 186 IVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 245

Query: 241 DDLALQHVRVIYARTALFFWFDVEYKL 268
           +DL LQHVRVIYARTAL FWFDVEYKL
Sbjct: 246 EDLTLQHVRVIYARTALLFWFDVEYKL 272

[Close]

BLAST of HG10015718 vs. ExPASy TrEMBL
Match: A0A1S3BG99 (F-box protein SKIP5 OS=Cucumis melo OX=3656 GN=LOC103489501 PE=4 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 3.1e-145
Identity = 257/267 (96.25%), Postives = 263/267 (98.50%), Query Frame = 0


Query: 1   MSRVVKNQSRVAIVSMEENKQRKWKRKGTSSSSPCINNLDDGCLMHIFSFLSPIPDRYNT 60
           MSRVVK+QSRVAIVSMEENKQRKWKRKGTSSSSP +N+LDDGCLMHIFSFLSPIPDRYNT
Sbjct: 6   MSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNT 65

Query: 61  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 120
           ALVCHRWRYLACHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS
Sbjct: 66  ALVCHRWRYLACHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 125

Query: 121 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 180
           NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL
Sbjct: 126 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 185

Query: 181 IIDGCVLQCESNPLDYLSCPIVCTASRDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 240
           I+DGCVLQCESNPLDYLSCPIVCTAS DKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS
Sbjct: 186 IVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 245

Query: 241 DDLALQHVRVIYARTALFFWFDVEYKL 268
           +DL LQHVRVIYARTAL FWFDVEYKL
Sbjct: 246 EDLTLQHVRVIYARTALLFWFDVEYKL 272

[Close]

BLAST of HG10015718 vs. ExPASy TrEMBL
Match: A0A6J1CBW5 (F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 3.0e-132
Identity = 240/256 (93.75%), Postives = 245/256 (95.70%), Query Frame = 0


Query: 14  VSMEENKQRKWKRKGT--SSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 73
           VS++E KQRKWKRKGT  SSSS  INNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 8   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 67

Query: 74  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 133
           CHPRLWLRVERSIKDLSE GVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 68  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 127

Query: 134 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 193
           GGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES
Sbjct: 128 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 187

Query: 194 NPLDYLSCPIVCTASRDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSDDLALQHVRVI 253
           NPLDYLSCPIVC+A+ DKLLPSSVKGGYT GVSVS TRIEGGAKAVLTS+DLALQHVRVI
Sbjct: 188 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 247

Query: 254 YARTALFFWFDVEYKL 268
           YARTALFFWFDVEY L
Sbjct: 248 YARTALFFWFDVEYNL 263

[Close]

BLAST of HG10015718 vs. ExPASy TrEMBL
Match: A0A6J1HPC3 (F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 7.4e-131
Identity = 233/253 (92.09%), Postives = 241/253 (95.26%), Query Frame = 0


Query: 15  SMEENKQRKWKRKGTSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP 74
           +ME+NKQRKWKRKGT SSS  INNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP
Sbjct: 6   TMEDNKQRKWKRKGTPSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP 65

Query: 75  RLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGG 134
           RLWLRVERSIKDLSE GVFPT+EAAVAAARPGDTILIATGGVHS SNIQITKPLCLIGGG
Sbjct: 66  RLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGGVHSVSNIQITKPLCLIGGG 125

Query: 135 ELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPL 194
           ELPEETTLFC+RGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPL
Sbjct: 126 ELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPL 185

Query: 195 DYLSCPIVCTASRDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSDDLALQHVRVIYAR 254
           DYLSCPIVCTAS DKL  SSVKGGY  GVSVS TRIEGGAKA+LTS+DLAL+HVRVIYAR
Sbjct: 186 DYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLALRHVRVIYAR 245

Query: 255 TALFFWFDVEYKL 268
           TALFFWFDVE+KL
Sbjct: 246 TALFFWFDVEHKL 258

[Close]

BLAST of HG10015718 vs. TAIR 10
Match: AT3G54480.1 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 349.4 bits (895), Expect = 2.6e-96
Identity = 172/255 (67.45%), Postives = 201/255 (78.82%), Query Frame = 0


Query: 21  QRKWKRKGTSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 80
           + K K++    S   +NNLDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHPRLWLRV
Sbjct: 20  ESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 79

Query: 81  ERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEET 140
           +R +KDLS+PGVF  IE+AV+AARPGDTILI  GG +  SNIQI KPLCL+GGGE+P+ET
Sbjct: 80  DRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGGEIPDET 139

Query: 141 TLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCP 200
           TL C RGS+SALE LST KL+NLTVKAELGCCLLHR GRL IDGCVLQCE+NPLD+LSCP
Sbjct: 140 TLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSCP 199

Query: 201 IVCTASRDKL--------LPSSVKGGY-THGVSVSHTRIEGGAKAVLTSDDLALQHVRVI 260
           IV TA  + +        +  +V G    + V+V  TRIEGGAKAV T  DL LQ VRV+
Sbjct: 200 IVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRVM 259

Query: 261 YARTALFFWFDVEYK 267
           Y++  L+FWFDV+Y+
Sbjct: 260 YSKAYLYFWFDVDYE 274

[Close]

BLAST of HG10015718 vs. TAIR 10
Match: AT3G54480.2 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 136.3 bits (342), Expect = 3.5e-32
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 21  QRKWKRKGTSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 80
           + K K++    S   +NNLDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHPRLWLRV
Sbjct: 20  ESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 79

Query: 81  ERSIKDLSEPGVFPTIEAAVAAAR 105
           +R +KDLS+PGVF  IE+AV+AAR
Sbjct: 80  DRFVKDLSQPGVFLNIESAVSAAR 103

The following BLAST results are available for this feature:

BLAST of HG10015718 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142419.1	5.8e-146	97.00	F-box protein SKIP5 isoform X1 [Cucumis sativus] >KGN52308.1 hypothetical protei...	[more]
XP_008446937.1	6.4e-145	96.25	PREDICTED: F-box protein SKIP5 [Cucumis melo] >KAA0034751.1 F-box protein SKIP5 ...	[more]
XP_038889674.1	2.1e-143	95.88	F-box protein SKIP5 [Benincasa hispida]	[more]
XP_022139176.1	6.2e-132	93.75	F-box protein SKIP5 [Momordica charantia]	[more]
XP_022966937.1	1.5e-130	92.09	F-box protein SKIP5 isoform X1 [Cucurbita maxima]	[more]

BLAST of HG10015718 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94FT2	3.7e-95	67.45	F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1	[more]

BLAST of HG10015718 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRR7	2.8e-146	97.00	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 ...	[more]
A0A5A7SZI1	3.1e-145	96.25	F-box protein SKIP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G...	[more]
A0A1S3BG99	3.1e-145	96.25	F-box protein SKIP5 OS=Cucumis melo OX=3656 GN=LOC103489501 PE=4 SV=1	[more]
A0A6J1CBW5	3.0e-132	93.75	F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1	[more]
A0A6J1HPC3	7.4e-131	92.09	F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 ...	[more]

BLAST of HG10015718 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54480.1	2.6e-96	67.45	SKP1/ASK-interacting protein 5	[more]
AT3G54480.2	3.5e-32	73.81	SKP1/ASK-interacting protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 39..80 e-value: 0.0065 score: 25.7
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 43..80 e-value: 7.0E-9 score: 35.4
None	No IPR available	GENE3D	1.20.1280.50		coord: 37..77 e-value: 2.6E-12 score: 48.4
None	No IPR available	PANTHER	PTHR14695:SF4	PROTEIN NESSUN DORMA	coord: 29..83 coord: 85..266
IPR045140	SHC SH2 domain-binding protein 1-like	PANTHER	PTHR14695	SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED	coord: 29..83
IPR045140	SHC SH2 domain-binding protein 1-like	PANTHER	PTHR14695	SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED	coord: 85..266
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 23..90
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 91..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015718.1	HG10015718.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding