HG10015708 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015708
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Annexin
Location	Chr02: 29155907 .. 29156403 (+)
RNA-Seq Expression	HG10015708
Synteny	HG10015708

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACTCTTTCCATTTGTGTGGCCATCCTCTCCTTGTTTTTGCTTGCCAACTTCTGCTACGCTGCAGAAGAAAATGAGGCTGCCTTTCTGCCTGCCCAAGGTATCTTCACTAGTTATTTTTCTTCTTTTTGGGTCATTCTCAACATCATGTGGGAGTTGAGTTATGTTCAGGTTAGCGTTTGGTGCTTAATTTTCAAACGCCTTTTGAAGGACATCACAGTTCTGTTTTGTCATGCTACACCTGTTAATTTGTACATAAAATTCTAGTACAAGAGCTAAGGAAATAGTATCTAAGAGCATTTCCATATTTTCATTATGCAGGTGCTGATATGACCAAAAATGGAGAAGCAGCTAAAGAAGAGAAATTCAAGTTTCTTCCTCACCACATACCATTCTACAAGAAGCCCTTTTTCAAGCCAATACCTCATCACCCAATCCTCAAGAAGCCATTTCCTAAACCACATTATCCACCAGTCTTCCCCAGCCATCCTTGA

mRNA sequence

ATGAAGACTCTTTCCATTTGTGTGGCCATCCTCTCCTTGTTTTTGCTTGCCAACTTCTGCTACGCTGCAGAAGAAAATGAGGCTGCCTTTCTGCCTGCCCAAGGTGCTGATATGACCAAAAATGGAGAAGCAGCTAAAGAAGAGAAATTCAAGTTTCTTCCTCACCACATACCATTCTACAAGAAGCCCTTTTTCAAGCCAATACCTCATCACCCAATCCTCAAGAAGCCATTTCCTAAACCACATTATCCACCAGTCTTCCCCAGCCATCCTTGA

Coding sequence (CDS)

ATGAAGACTCTTTCCATTTGTGTGGCCATCCTCTCCTTGTTTTTGCTTGCCAACTTCTGCTACGCTGCAGAAGAAAATGAGGCTGCCTTTCTGCCTGCCCAAGGTGCTGATATGACCAAAAATGGAGAAGCAGCTAAAGAAGAGAAATTCAAGTTTCTTCCTCACCACATACCATTCTACAAGAAGCCCTTTTTCAAGCCAATACCTCATCACCCAATCCTCAAGAAGCCATTTCCTAAACCACATTATCCACCAGTCTTCCCCAGCCATCCTTGA

Protein sequence

MKTLSICVAILSLFLLANFCYAAEENEAAFLPAQGADMTKNGEAAKEEKFKFLPHHIPFYKKPFFKPIPHHPILKKPFPKPHYPPVFPSHP

Homology

[Close]

BLAST of HG10015708 vs. NCBI nr
Match: KAE8648861.1 (hypothetical protein Csa_008879 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 6.8e-30
Identity = 73/90 (81.11%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 3   TLSICVAI-LSLFLLANFCYAAEENEAAFLPAQGADMTKNGEAAKEEKFKFLPHHIPFYK 62
           T+SIC+AI LSLFLL NFCYAAEENE AFLPAQGA +TKNGE AKEEKFKFLP HIPFYK
Sbjct: 64  TISICMAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYK 123

Query: 63  KPFFKPIPHHPILKKPFPKPHYPPVFPSHP 92
           KP FK IP  PI+KKPFPKP+ PPV PSHP
Sbjct: 124 KPIFKTIPRQPIIKKPFPKPYRPPVLPSHP 153

[Close]

BLAST of HG10015708 vs. NCBI nr
Match: XP_022138883.1 (uncharacterized protein LOC111009954 [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 64/103 (62.14%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 1   MKTLSICVAI-LSLFLLANFCYAAEENEAAFLPAQGA-DMTKNGEAAKEEKFKFLPHH-I 60
           MKT  I + I LSL LL N C AAE+N A F P Q A D+TKNGEA + EKF+FL HH  
Sbjct: 31  MKTFFISLGILLSLLLLVNVCNAAEKNVAEFQPGQDADDITKNGEAVQGEKFRFLSHHNK 90

Query: 61  PFYKKPFF---------KPIPHHPILKKPFPKPHYPPVFPSHP 92
           P YKKPFF         KPIPHHPILKKP PKPH+PP FP+HP
Sbjct: 91  PHYKKPFFQQIPHPIVKKPIPHHPILKKPLPKPHFPPFFPTHP 133

[Close]

BLAST of HG10015708 vs. NCBI nr
Match: KAG6601142.1 (hypothetical protein SDJN03_06375, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031941.1 hypothetical protein SDJN02_05983 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 56/96 (58.33%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 1  MKTLSICVAILSLFLLANFCYAAEENEAAFLPAQGADMTKNGEAAKEEKFKFLPHHIPFY 60
          MKT+S+   +L   LLAN CYAAE+       AQG    + GE  + EK K +PHHIPFY
Sbjct: 1  MKTVSM---LLCFLLLANLCYAAEQEMGKLEAAQGT-KGEEGEETEAEKLKLIPHHIPFY 60

Query: 61 KKPFF-----KPIPHHPILKKPFPKPHYPPVFPSHP 92
          KKP       KPIPHHPILKKPFPKP YPPVFP+HP
Sbjct: 61 KKPLLKAAPKKPIPHHPILKKPFPKPRYPPVFPTHP 92

[Close]

BLAST of HG10015708 vs. NCBI nr
Match: ADN34202.1 (annexin [Cucumis melo subsp. melo])

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-14
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1   MKTLSICVAI-LSLFLLANFCYAAEENEAAFLPAQGAD--MTKNGEAAKEEKFKFLPHHI 60
           M+T  I + I LS  LL NFCYAAEE+ A F P +GA     KNGE  +EEKFKFL HH 
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 438

Query: 61  PFYKKPFFKPIPH-HPILKKPFP-KPHYPPVFPSHP 92
           P+YKKPF KPIP+ HP LKKP P  P +    P HP
Sbjct: 439 PYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHP 474

[Close]

BLAST of HG10015708 vs. NCBI nr
Match: KAA0034746.1 (annexin [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-14
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1   MKTLSICVAI-LSLFLLANFCYAAEENEAAFLPAQGAD--MTKNGEAAKEEKFKFLPHHI 60
           M+T  I + I LS  LL NFCYAAEE+ A F P +GA     KNGE  +EEKFKFL HH 
Sbjct: 389 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 448

Query: 61  PFYKKPFFKPIPH-HPILKKPFP-KPHYPPVFPSHP 92
           P+YKKPF KPIP+ HP LKKP P  P +    P HP
Sbjct: 449 PYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHP 484

[Close]

BLAST of HG10015708 vs. ExPASy TrEMBL
Match: A0A0A0KRM7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623640 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.1e-28
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 11 LSLFLLANFCYAAEENEAAFLPAQGADMTKNGEAAKEEKFKFLPHHIPFYKKPFFKPIPH 70
          LSLFLL NFCYAAEENE AFLPAQGA +TKNGE AKEEKFKFLP HIPFYKKP FK IP 
Sbjct: 5  LSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFKTIPR 64

Query: 71 HPILKKPFPKPHYPPVFPSHP 92
           PI+KKPFPKP+ PPV PSHP
Sbjct: 65 QPIIKKPFPKPYRPPVLPSHP 85

[Close]

BLAST of HG10015708 vs. ExPASy TrEMBL
Match: A0A6J1CED0 (uncharacterized protein LOC111009954 OS=Momordica charantia OX=3673 GN=LOC111009954 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.2e-20
Identity = 64/103 (62.14%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 1   MKTLSICVAI-LSLFLLANFCYAAEENEAAFLPAQGA-DMTKNGEAAKEEKFKFLPHH-I 60
           MKT  I + I LSL LL N C AAE+N A F P Q A D+TKNGEA + EKF+FL HH  
Sbjct: 31  MKTFFISLGILLSLLLLVNVCNAAEKNVAEFQPGQDADDITKNGEAVQGEKFRFLSHHNK 90

Query: 61  PFYKKPFF---------KPIPHHPILKKPFPKPHYPPVFPSHP 92
           P YKKPFF         KPIPHHPILKKP PKPH+PP FP+HP
Sbjct: 91  PHYKKPFFQQIPHPIVKKPIPHHPILKKPLPKPHFPPFFPTHP 133

[Close]

BLAST of HG10015708 vs. ExPASy TrEMBL
Match: A0A5A7SY00 (Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007700 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-14
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1   MKTLSICVAI-LSLFLLANFCYAAEENEAAFLPAQGAD--MTKNGEAAKEEKFKFLPHHI 60
           M+T  I + I LS  LL NFCYAAEE+ A F P +GA     KNGE  +EEKFKFL HH 
Sbjct: 389 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 448

Query: 61  PFYKKPFFKPIPH-HPILKKPFP-KPHYPPVFPSHP 92
           P+YKKPF KPIP+ HP LKKP P  P +    P HP
Sbjct: 449 PYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHP 484

[Close]

BLAST of HG10015708 vs. ExPASy TrEMBL
Match: A0A5D3CG71 (Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002960 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-14
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1  MKTLSICVAI-LSLFLLANFCYAAEENEAAFLPAQGAD--MTKNGEAAKEEKFKFLPHHI 60
          M+T  I + I LS  LL NFCYAAEE+ A F P +GA     KNGE  +EEKFKFL HH 
Sbjct: 1  MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 60

Query: 61 PFYKKPFFKPIPH-HPILKKPFP-KPHYPPVFPSHP 92
          P+YKKPF KPIP+ HP LKKP P  P +    P HP
Sbjct: 61 PYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHP 96

[Close]

BLAST of HG10015708 vs. ExPASy TrEMBL
Match: E5GCK5 (Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-14
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1   MKTLSICVAI-LSLFLLANFCYAAEENEAAFLPAQGAD--MTKNGEAAKEEKFKFLPHHI 60
           M+T  I + I LS  LL NFCYAAEE+ A F P +GA     KNGE  +EEKFKFL HH 
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 438

Query: 61  PFYKKPFFKPIPH-HPILKKPFP-KPHYPPVFPSHP 92
           P+YKKPF KPIP+ HP LKKP P  P +    P HP
Sbjct: 439 PYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHP 474

The following BLAST results are available for this feature:

BLAST of HG10015708 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648861.1	6.8e-30	81.11	hypothetical protein Csa_008879 [Cucumis sativus]	[more]
XP_022138883.1	1.1e-19	62.14	uncharacterized protein LOC111009954 [Momordica charantia]	[more]
KAG6601142.1	1.0e-17	58.33	hypothetical protein SDJN03_06375, partial [Cucurbita argyrosperma subsp. sorori...	[more]
ADN34202.1	4.0e-14	57.29	annexin [Cucumis melo subsp. melo]	[more]
KAA0034746.1	4.0e-14	57.29	annexin [Cucumis melo var. makuwa]	[more]

BLAST of HG10015708 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10015708 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRM7	3.1e-28	82.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623640 PE=4 SV=1	[more]
A0A6J1CED0	5.2e-20	62.14	uncharacterized protein LOC111009954 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A5A7SY00	1.9e-14	57.29	Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007700 PE=3 S...	[more]
A0A5D3CG71	1.9e-14	57.29	Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002960 PE=4 ...	[more]
E5GCK5	1.9e-14	57.29	Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

BLAST of HG10015708 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015708.1	HG10015708.1	mRNA