HG10015633 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015633
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase I subunit like
Location	Chr02: 28319258 .. 28319752 (+)
RNA-Seq Expression	HG10015633
Synteny	HG10015633

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGGTTTCTTCCAATCCCATATCAATGGAAGATTTCCCCATCTCTCCCATTTCTCTCTGCAATCTCCTCACCTTCTTCCCTCACCCTTCCACTCTACAAATTCCCTCTCCAATACTCATTTTTCAGGTCGCAATCTCAAATTTCCAGTAACCGCAGAAGATTCACAGCGTTTGCTAGCAACAAGAACAGCGAATTGGACGGAAATATCAAGGAAAGAGAAGGAGAAAGAAATGGAGCGAATGGCTCCTCCAATGGTGGCGATGACTTGAGGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTTTTAATTGATCCGGATCCCGATAACATTCTGGCCGTTGCATTGACTGGTTTGCTTGCTTGGGCGAGTGTTCAGGTTTTGTGGCAGCTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTCAAGTACTCTTTTATTGCCGCGCTTCTTATTTTCATTCTAATTACATTACTCTAG

mRNA sequence

ATGTTAGGGTTTCTTCCAATCCCATATCAATGGAAGATTTCCCCATCTCTCCCATTTCTCTCTGCAATCTCCTCACCTTCTTCCCTCACCCTTCCACTCTACAAATTCCCTCTCCAATACTCATTTTTCAGGTCGCAATCTCAAATTTCCAGTAACCGCAGAAGATTCACAGCGTTTGCTAGCAACAAGAACAGCGAATTGGACGGAAATATCAAGGAAAGAGAAGGAGAAAGAAATGGAGCGAATGGCTCCTCCAATGGTGGCGATGACTTGAGGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTTTTAATTGATCCGGATCCCGATAACATTCTGGCCGTTGCATTGACTGGTTTGCTTGCTTGGGCGAGTGTTCAGGTTTTGTGGCAGCTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTCAAGTACTCTTTTATTGCCGCGCTTCTTATTTTCATTCTAATTACATTACTCTAG

Coding sequence (CDS)

ATGTTAGGGTTTCTTCCAATCCCATATCAATGGAAGATTTCCCCATCTCTCCCATTTCTCTCTGCAATCTCCTCACCTTCTTCCCTCACCCTTCCACTCTACAAATTCCCTCTCCAATACTCATTTTTCAGGTCGCAATCTCAAATTTCCAGTAACCGCAGAAGATTCACAGCGTTTGCTAGCAACAAGAACAGCGAATTGGACGGAAATATCAAGGAAAGAGAAGGAGAAAGAAATGGAGCGAATGGCTCCTCCAATGGTGGCGATGACTTGAGGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTTTTAATTGATCCGGATCCCGATAACATTCTGGCCGTTGCATTGACTGGTTTGCTTGCTTGGGCGAGTGTTCAGGTTTTGTGGCAGCTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTCAAGTACTCTTTTATTGCCGCGCTTCTTATTTTCATTCTAATTACATTACTCTAG

Protein sequence

MLGFLPIPYQWKISPSLPFLSAISSPSSLTLPLYKFPLQYSFFRSQSQISSNRRRFTAFASNKNSELDGNIKEREGERNGANGSSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

Homology

[Close]

BLAST of HG10015633 vs. NCBI nr
Match: KAA0034669.1 (uncharacterized protein E6C27_scaffold65G006880 [Cucumis melo var. makuwa] >TYK09220.1 uncharacterized protein E5676_scaffold475G002130 [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 2.4e-62
Identity = 141/164 (85.98%), Postives = 149/164 (90.85%), Query Frame = 0


Query: 1   MLGFLPIPYQWKISPSLPFLSAISSPSSLTLPLYKFPLQYSFFRSQSQISSNRRRFTAFA 60
           MLGFL IP+Q KISPSL  L +ISSPSSL LPLYKFPL ++FF S+  ISSNRRRFTA A
Sbjct: 1   MLGFLTIPHQLKISPSLASLPSISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRFTASA 60

Query: 61  SNKNSELDGNIKEREGERNGANGSSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           SNKN+E  G+IKEREGERNGA  SSNGGDDL+KERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  SNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of HG10015633 vs. NCBI nr
Match: XP_008446780.1 (PREDICTED: uncharacterized protein LOC103489407 [Cucumis melo])

HSP 1 Score: 249.2 bits (635), Expect = 2.4e-62
Identity = 141/164 (85.98%), Postives = 149/164 (90.85%), Query Frame = 0


Query: 1   MLGFLPIPYQWKISPSLPFLSAISSPSSLTLPLYKFPLQYSFFRSQSQISSNRRRFTAFA 60
           MLGFL IP+Q KISPSL  L +ISSPSSL LPLYKFPL ++FF S+  ISSNRRRFTA A
Sbjct: 23  MLGFLTIPHQLKISPSLASLPSISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRFTASA 82

Query: 61  SNKNSELDGNIKEREGERNGANGSSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           SNKN+E  G+IKEREGERNGA  SSNGGDDL+KERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 83  SNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL 142

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 143 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 186

[Close]

BLAST of HG10015633 vs. NCBI nr
Match: XP_011655841.1 (uncharacterized protein LOC105435592 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 136/164 (82.93%), Postives = 149/164 (90.85%), Query Frame = 0


Query: 1   MLGFLPIPYQWKISPSLPFLSAISSPSSLTLPLYKFPLQYSFFRSQSQISSNRRRFTAFA 60
           MLGFL IP+Q K+SPS    ++ISSPSSL  PLYKFP+ ++F+ SQ  ISS+ RRFTAFA
Sbjct: 1   MLGFLTIPHQLKVSPS---FASISSPSSLFRPLYKFPIHHTFYNSQFLISSDHRRFTAFA 60

Query: 61  SNKNSELDGNIKEREGERNGANGSSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           SNKN+E  G+IKEREGERNGANGSSNGGDDL+KERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  SNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL 161

[Close]

BLAST of HG10015633 vs. NCBI nr
Match: XP_023549272.1 (uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 4.5e-56
Identity = 135/167 (80.84%), Postives = 144/167 (86.23%), Query Frame = 0


Query: 1   MLGFLPIPYQWKISPSLPFLS---AISSPSSLTLPLYKFPLQYSFFRSQSQISSNRRRFT 60
           MLGFL IPYQWKISPSL   S   ++S+ SSL+ PL+KFPL Y    S+SQI   R+RFT
Sbjct: 3   MLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHY----SESQIPGKRKRFT 62

Query: 61  AFASNKNSELDGNIKEREGERNGANGSSNGGDDLRKERGPVFNIKWAELLIDPDPDNILA 120
           A ASN ++ L GNIKEREGERNGA G SNGGDDLRKERGPVFNIKWAELLIDPDPDNILA
Sbjct: 63  ALASNNDNGLGGNIKEREGERNGAKG-SNGGDDLRKERGPVFNIKWAELLIDPDPDNILA 122

Query: 121 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of HG10015633 vs. NCBI nr
Match: KAG7032002.1 (hypothetical protein SDJN02_06044, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-54
Identity = 133/167 (79.64%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MLGFLPIPYQWKISPSLPFLS---AISSPSSLTLPLYKFPLQYSFFRSQSQISSNRRRFT 60
           MLGFL IPYQWKISPSLP  S   ++S+ SSL+  L+KFPL Y     +SQI   R+RFT
Sbjct: 3   MLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHY----LESQIPGKRKRFT 62

Query: 61  AFASNKNSELDGNIKEREGERNGANGSSNGGDDLRKERGPVFNIKWAELLIDPDPDNILA 120
           A ASN ++ L GNIKEREGERNGA G SNG DDLRKERGPVFNIKWAELLIDPDPDNILA
Sbjct: 63  ALASNNDNGLGGNIKEREGERNGAKG-SNGDDDLRKERGPVFNIKWAELLIDPDPDNILA 122

Query: 121 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of HG10015633 vs. ExPASy TrEMBL
Match: A0A5D3CD16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002130 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.2e-62
Identity = 141/164 (85.98%), Postives = 149/164 (90.85%), Query Frame = 0


Query: 1   MLGFLPIPYQWKISPSLPFLSAISSPSSLTLPLYKFPLQYSFFRSQSQISSNRRRFTAFA 60
           MLGFL IP+Q KISPSL  L +ISSPSSL LPLYKFPL ++FF S+  ISSNRRRFTA A
Sbjct: 1   MLGFLTIPHQLKISPSLASLPSISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRFTASA 60

Query: 61  SNKNSELDGNIKEREGERNGANGSSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           SNKN+E  G+IKEREGERNGA  SSNGGDDL+KERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  SNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of HG10015633 vs. ExPASy TrEMBL
Match: A0A1S3BFX0 (uncharacterized protein LOC103489407 OS=Cucumis melo OX=3656 GN=LOC103489407 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.2e-62
Identity = 141/164 (85.98%), Postives = 149/164 (90.85%), Query Frame = 0


Query: 1   MLGFLPIPYQWKISPSLPFLSAISSPSSLTLPLYKFPLQYSFFRSQSQISSNRRRFTAFA 60
           MLGFL IP+Q KISPSL  L +ISSPSSL LPLYKFPL ++FF S+  ISSNRRRFTA A
Sbjct: 23  MLGFLTIPHQLKISPSLASLPSISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRFTASA 82

Query: 61  SNKNSELDGNIKEREGERNGANGSSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           SNKN+E  G+IKEREGERNGA  SSNGGDDL+KERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 83  SNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL 142

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 143 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 186

[Close]

BLAST of HG10015633 vs. ExPASy TrEMBL
Match: A0A0A0KRG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615300 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 8.5e-61
Identity = 136/164 (82.93%), Postives = 149/164 (90.85%), Query Frame = 0


Query: 1   MLGFLPIPYQWKISPSLPFLSAISSPSSLTLPLYKFPLQYSFFRSQSQISSNRRRFTAFA 60
           MLGFL IP+Q K+SPS    ++ISSPSSL  PLYKFP+ ++F+ SQ  ISS+ RRFTAFA
Sbjct: 1   MLGFLTIPHQLKVSPS---FASISSPSSLFRPLYKFPIHHTFYNSQFLISSDHRRFTAFA 60

Query: 61  SNKNSELDGNIKEREGERNGANGSSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           SNKN+E  G+IKEREGERNGANGSSNGGDDL+KERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  SNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL 161

[Close]

BLAST of HG10015633 vs. ExPASy TrEMBL
Match: A0A6J1GYA2 (uncharacterized protein LOC111458579 OS=Cucurbita moschata OX=3662 GN=LOC111458579 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 6.9e-55
Identity = 133/167 (79.64%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MLGFLPIPYQWKISPSLPFLS---AISSPSSLTLPLYKFPLQYSFFRSQSQISSNRRRFT 60
           MLGFL IPYQWKISPSLP  S   ++S+ SSL+  L+KFPL Y    S+SQI   R+RFT
Sbjct: 3   MLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHY----SESQIPGKRKRFT 62

Query: 61  AFASNKNSELDGNIKEREGERNGANGSSNGGDDLRKERGPVFNIKWAELLIDPDPDNILA 120
           A ASN ++ L GNIKEREGERNGA G S G DDLRKERGPVFNIKWAELLIDPDPDNILA
Sbjct: 63  ALASNNDNGLGGNIKEREGERNGAKG-SKGDDDLRKERGPVFNIKWAELLIDPDPDNILA 122

Query: 121 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of HG10015633 vs. ExPASy TrEMBL
Match: A0A6J1JWP5 (uncharacterized protein LOC111489528 OS=Cucurbita maxima OX=3661 GN=LOC111489528 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.4e-54
Identity = 132/167 (79.04%), Postives = 141/167 (84.43%), Query Frame = 0


Query: 1   MLGFLPIPYQWKISPSLPFLSA---ISSPSSLTLPLYKFPLQYSFFRSQSQISSNRRRFT 60
           MLGFL IPYQWKISPSL   S+   +S+ S L+ PL+KFPL Y    S+SQIS  R+RF 
Sbjct: 3   MLGFLTIPYQWKISPSLSSSSSPFPLSTRSFLSFPLFKFPLHY----SESQISGKRKRFA 62

Query: 61  AFASNKNSELDGNIKEREGERNGANGSSNGGDDLRKERGPVFNIKWAELLIDPDPDNILA 120
           A ASN ++ L GNIKEREGERNGA G S G DDLRKERGPVFNIKWAELLIDPDPDNILA
Sbjct: 63  ALASNNDNGLGGNIKEREGERNGAKG-SKGDDDLRKERGPVFNIKWAELLIDPDPDNILA 122

Query: 121 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of HG10015633 vs. TAIR 10
Match: AT4G40045.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-16
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 68  DGNIKEREGERNGANGSSN-GGDDLRKERGPVFNIKWAELLIDPDPDNILAVALTGLLAW 127
           +GN   +E    G    +N  G+  +K++   F+ KW ELL +PD DN +AV L G+L W
Sbjct: 44  NGNDSAKESSGGGNRPVTNDDGNGSKKDQFAGFSFKWGELL-NPDQDNFVAVGLAGVLTW 103

Query: 128 ASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AS+QVL QLFFIS AILVAALKYSFIAALLIFIL+TLL
Sbjct: 104 ASLQVLSQLFFISFAILVAALKYSFIAALLIFILVTLL 140

The following BLAST results are available for this feature:

BLAST of HG10015633 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034669.1	2.4e-62	85.98	uncharacterized protein E6C27_scaffold65G006880 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_008446780.1	2.4e-62	85.98	PREDICTED: uncharacterized protein LOC103489407 [Cucumis melo]	[more]
XP_011655841.1	1.7e-60	82.93	uncharacterized protein LOC105435592 [Cucumis sativus]	[more]
XP_023549272.1	4.5e-56	80.84	uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo]	[more]
KAG7032002.1	1.4e-54	79.64	hypothetical protein SDJN02_06044, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of HG10015633 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10015633 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CD16	1.2e-62	85.98	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFX0	1.2e-62	85.98	uncharacterized protein LOC103489407 OS=Cucumis melo OX=3656 GN=LOC103489407 PE=...	[more]
A0A0A0KRG8	8.5e-61	82.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615300 PE=4 SV=1	[more]
A0A6J1GYA2	6.9e-55	79.64	uncharacterized protein LOC111458579 OS=Cucurbita moschata OX=3662 GN=LOC1114585...	[more]
A0A6J1JWP5	3.4e-54	79.04	uncharacterized protein LOC111489528 OS=Cucurbita maxima OX=3661 GN=LOC111489528...	[more]

BLAST of HG10015633 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G40045.1	1.6e-16	58.16	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..93
None	No IPR available	PANTHER	PTHR36789	TRANSMEMBRANE PROTEIN	coord: 28..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015633.1	HG10015633.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane