HG10015621 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015621
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pectinesterase
Location	Chr02: 28208473 .. 28209899 (+)
RNA-Seq Expression	HG10015621
Synteny	HG10015621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTGGGCCGAGCTGGCCTGGTCGGCCTCGATACTGAAGCCGAGGCTGAGCCTATCTGTTTGGGTGCACGAGCCCAAGTAAGACATATATGGACTTTTGAGAAAATATCATAAAAGACTAAAACCAAAATGGACACATGGAGTCGGCCTCGGGTCTGAGGTTGGCCTTAATGTTAAATTCGCAAGGCTGAAACCTTACAAAAGAGGAGGCTGAGAGAACTTAGGGGAAGTCTAGAAAGAAAAGGAAAGGATGAAACCTTACAAAAGAGGAGGCTGAAAGAACTTAAAGGAAGTCTAGAAAGAAAAGGAAAGGATCCACGACTTATATATAGGGGGAAAGCAAACAAATGAGGTAAGTGAACTTCCAAGTAAGAATTTTATTAGCATTAAACCTCCCTCCTCTGACTTAGGCATTGGAGTGCGTGTGGCCTACACCACATCTATGTGTAGTTTTTTTCTTTTGATTTGCAGGCACTTCCTCCAAAATACAAATTTATTGTTGGCACTTCCTCGAGGTAGCACAATTTACTACCCAAATCTAGTATTAACAGTTTATATTAAGTATATATACGTATATATATATATGAAGTACTTATTGTCGGTGGAAAAAAGAAACCAGAAGTCATGTTCCTTTTTTGTTCATCCAAAGTTCCAAACAATTAATTGTCAACTAGTCATAAAAAAATTAGTGTTAAAGTAATTAATGAATGTAATTATATGATCATTAGCTATTATGAGAGGAGAAATATCAACATCTAGTTCCAGTCTCTCCATAAATATGTAGTGTATTCTTATTCTTCATTGCTCAAGAGTTTTTAAAGTCCTATCATTGTTGAATTTACCAGCAATTCTCTTCAAGTTCTTACGTTTTTAGTTGCATATTTTTCAATTCTCCCAAAGATTCAAATACTTGTTGTTGCATATTTCATCTTAATTTCTCTAATTCTCCTTGTTAGTAGCATTATTTTGTTTAATGCTATTGTGTCTTTGAATGGTATAGGAGATTTTAGAACTATTATTGAGCAATATCTATGACACCAAATAATAGTTATTATAGGTTTTACATCAACATAAAGCCTAGAATATATAACGAACATGATGAAATTGCGGGTGAAAAAACTTGTAGAGCATTGGTAGGAGACGATGCAACAACTACCATTATTATTGATAATAGGAGAAATCGTCGTGGTTTTGGAACCTCGGATCCAATCACTTTCGATGAGCACTCTAATTTTTTTTCTTCTTTAATTTTAATTAGTTTTTTAATTAGAAAAATATTCATCTTCTTTTGGTCCACTGTGTGTAGCAATTGCAATTTGATAGGTGACAAAAAAAAATTTGAAAATTATTTTAGAATGTATGAGGCTACAGAGGAACTTAGTATTACTGTTTTAATGATTAAAATAATGATTATTATATGTTGA

mRNA sequence

ATGAATCTGGGCCGAGCTGGCCTGGTCGGCCTCGATACTGAAGCCGAGGCTGAGCCTATCTGTTTGGGTGCACGAGCCCAAGCAATATCTATGACACCAAATAATAGTTATTATAGGTTTTACATCAACATAAAGCCTAGAATATATAACGAACATGATGAAATTGCGGGTGAAAAAACTTGTAGAGCATTGGTAGGAGACGATGCAACAACTACCATTATTATTGATAATAGGAGAAATCGTCGTGGTTTTGGAACCTCGGATCCAATCACTTTCGATGAGCACTCTAATTTTTTTTCTTCTTTAATTTTAATTAGTTTTTTAATTAGAAAAATATTCATCTTCTTTTGGTCCACTGTGTGTAGCAATTGCAATTTGATAGGTGACAAAAAAAAATTTGAAAATTATTTTAGAATGTATGAGGCTACAGAGGAACTTAGTATTACTGTTTTAATGATTAAAATAATGATTATTATATGTTGA

Coding sequence (CDS)

ATGAATCTGGGCCGAGCTGGCCTGGTCGGCCTCGATACTGAAGCCGAGGCTGAGCCTATCTGTTTGGGTGCACGAGCCCAAGCAATATCTATGACACCAAATAATAGTTATTATAGGTTTTACATCAACATAAAGCCTAGAATATATAACGAACATGATGAAATTGCGGGTGAAAAAACTTGTAGAGCATTGGTAGGAGACGATGCAACAACTACCATTATTATTGATAATAGGAGAAATCGTCGTGGTTTTGGAACCTCGGATCCAATCACTTTCGATGAGCACTCTAATTTTTTTTCTTCTTTAATTTTAATTAGTTTTTTAATTAGAAAAATATTCATCTTCTTTTGGTCCACTGTGTGTAGCAATTGCAATTTGATAGGTGACAAAAAAAAATTTGAAAATTATTTTAGAATGTATGAGGCTACAGAGGAACTTAGTATTACTGTTTTAATGATTAAAATAATGATTATTATATGTTGA

Protein sequence

MNLGRAGLVGLDTEAEAEPICLGARAQAISMTPNNSYYRFYINIKPRIYNEHDEIAGEKTCRALVGDDATTTIIIDNRRNRRGFGTSDPITFDEHSNFFSSLILISFLIRKIFIFFWSTVCSNCNLIGDKKKFENYFRMYEATEELSITVLMIKIMIIIC

Homology

[Close]

BLAST of HG10015621 vs. NCBI nr
Match: XP_022143502.1 (pectinesterase-like [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-11
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 28  AISMTPNNSYYRFYINIKPRIYNEHDEIAGEKTCRALVGDDATTTIIIDNRRNRRGFGTS 87
           AIS  P+NS  RFYI IK   YNEH E+  +KT   L+GD+A TT+I+DNR N  GFGTS
Sbjct: 23  AISAAPDNSNSRFYIRIKSGTYNEHIEVESQKTFITLIGDNAATTVIVDNRSNGTGFGTS 82

Query: 88  DPITFDEHSNFF 100
              TF    N F
Sbjct: 83  QSATFAVRGNNF 94

[Close]

BLAST of HG10015621 vs. NCBI nr
Match: XP_022148123.1 (probable pectinesterase/pectinesterase inhibitor 39 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-10
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 26  AQAISMTPNNSYYRFYINIKPRIYNEHDEIAGEKTCRALVGDDATTTIIIDNRRNRRGFG 85
           + AI+  PNN   RFYI++KP IY EH E+   KT  +L+GDDA+TT+I+D+R N  GF 
Sbjct: 45  SDAIAAAPNNGSIRFYIHVKPGIYKEHIEVPELKTFISLIGDDASTTVIVDDRSNHAGFS 104

Query: 86  TSDPITFDEHSNFFSSLIL 105
           T+   TF   +  F +  L
Sbjct: 105 TTSSATFTVKAKHFVAQFL 123

[Close]

BLAST of HG10015621 vs. NCBI nr
Match: XP_022150325.1 (probable pectinesterase/pectinesterase inhibitor 44 [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 4.7e-10
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 28  AISMTPNNSYYRFYINIKPRIYNEHDEIAGEKTCRALVGDDATTTIIIDNRRNRRGFGTS 87
           AI+  PN S  RFYI++KP  YNEH E+  +KT  AL+GDDA+TTII+DNR N  GF T+
Sbjct: 47  AIAAAPNFSTSRFYIHVKPGTYNEHVEVPAQKTFIALIGDDASTTIIVDNRSNGTGFSTA 106

Query: 88  DPIT 92
              T
Sbjct: 107 TSAT 110

[Close]

BLAST of HG10015621 vs. NCBI nr
Match: XP_022137308.1 (probable pectinesterase/pectinesterase inhibitor 39 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-09
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 28  AISMTPNNSYYRFYINIKPRIYNEHDEIAGEKTCRALVGDDATTTIIIDNRRNRRGFGTS 87
           AI+  P+NS  RFYI++    YNEH EI   KT  AL+GDDA+TTII+DNR NR GF T 
Sbjct: 46  AIAAAPDNSITRFYIHVMAGTYNEHVEIPSTKTFVALIGDDASTTIIVDNRSNRIGFKTF 105

Query: 88  DPITFD-EHSNFFSSLI 104
              TF+ +  NF +  I
Sbjct: 106 HSATFNVKGRNFMAKSI 122

[Close]

BLAST of HG10015621 vs. NCBI nr
Match: KAG6572150.1 (putative pectinesterase/pectinesterase inhibitor 40, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-09
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 26  AQAISMTPNNSYYRFYINIKPRIYNEHDEIAGEKTCRALVGDDATTTIIIDNRRNRRGFG 85
           + AI+  P+NS  RFYI++ P IY EH +I   K   AL+GD+A TTII+DNR N  GF 
Sbjct: 42  SDAIAAAPDNSKTRFYIHVTPGIYREHIQIPSTKKFIALIGDNAFTTIIVDNRSNGTGFS 101

Query: 86  TSDPITFDEHSNFF 100
           TSD  T +   N F
Sbjct: 102 TSDSATMEVKGNNF 115

[Close]

BLAST of HG10015621 vs. ExPASy TrEMBL
Match: A0A6J1CR03 (Pectinesterase OS=Momordica charantia OX=3673 GN=LOC111013377 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 28  AISMTPNNSYYRFYINIKPRIYNEHDEIAGEKTCRALVGDDATTTIIIDNRRNRRGFGTS 87
           AIS  P+NS  RFYI IK   YNEH E+  +KT   L+GD+A TT+I+DNR N  GFGTS
Sbjct: 23  AISAAPDNSNSRFYIRIKSGTYNEHIEVESQKTFITLIGDNAATTVIVDNRSNGTGFGTS 82

Query: 88  DPITFDEHSNFF 100
              TF    N F
Sbjct: 83  QSATFAVRGNNF 94

[Close]

BLAST of HG10015621 vs. ExPASy TrEMBL
Match: A0A6J1D381 (Pectinesterase OS=Momordica charantia OX=3673 GN=LOC111016876 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-10
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 26  AQAISMTPNNSYYRFYINIKPRIYNEHDEIAGEKTCRALVGDDATTTIIIDNRRNRRGFG 85
           + AI+  PNN   RFYI++KP IY EH E+   KT  +L+GDDA+TT+I+D+R N  GF 
Sbjct: 45  SDAIAAAPNNGSIRFYIHVKPGIYKEHIEVPELKTFISLIGDDASTTVIVDDRSNHAGFS 104

Query: 86  TSDPITFDEHSNFFSSLIL 105
           T+   TF   +  F +  L
Sbjct: 105 TTSSATFTVKAKHFVAQFL 123

[Close]

BLAST of HG10015621 vs. ExPASy TrEMBL
Match: A0A6J1D863 (Pectinesterase OS=Momordica charantia OX=3673 GN=LOC111018522 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-10
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 28  AISMTPNNSYYRFYINIKPRIYNEHDEIAGEKTCRALVGDDATTTIIIDNRRNRRGFGTS 87
           AI+  PN S  RFYI++KP  YNEH E+  +KT  AL+GDDA+TTII+DNR N  GF T+
Sbjct: 47  AIAAAPNFSTSRFYIHVKPGTYNEHVEVPAQKTFIALIGDDASTTIIVDNRSNGTGFSTA 106

Query: 88  DPIT 92
              T
Sbjct: 107 TSAT 110

[Close]

BLAST of HG10015621 vs. ExPASy TrEMBL
Match: A0A6J1C9Z6 (Pectinesterase OS=Momordica charantia OX=3673 GN=LOC111008805 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.6e-10
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 28  AISMTPNNSYYRFYINIKPRIYNEHDEIAGEKTCRALVGDDATTTIIIDNRRNRRGFGTS 87
           AI+  P+NS  RFYI++    YNEH EI   KT  AL+GDDA+TTII+DNR NR GF T 
Sbjct: 46  AIAAAPDNSITRFYIHVMAGTYNEHVEIPSTKTFVALIGDDASTTIIVDNRSNRIGFKTF 105

Query: 88  DPITFD-EHSNFFSSLI 104
              TF+ +  NF +  I
Sbjct: 106 HSATFNVKGRNFMAKSI 122

[Close]

BLAST of HG10015621 vs. ExPASy TrEMBL
Match: A0A6J1KPG6 (Pectinesterase OS=Cucurbita maxima OX=3661 GN=LOC111496427 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 26  AQAISMTPNNSYYRFYINIKPRIYNEHDEIAGEKTCRALVGDDATTTIIIDNRRNRRGFG 85
           + AI   PN +  RFYI+IKP IYNEH EI  +KT  +L+GD+A+TTII+DNR    GF 
Sbjct: 43  SDAIVAAPNFTTTRFYIHIKPGIYNEHIEIPSQKTFISLIGDNASTTIIVDNRSKATGFS 102

Query: 86  TSDPITFDEH-SNFFSSLI 104
           T++  T   + +NF +  +
Sbjct: 103 TANSATLTVNGANFMAKFL 121

The following BLAST results are available for this feature:

BLAST of HG10015621 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143502.1	5.6e-11	54.17	pectinesterase-like [Momordica charantia]	[more]
XP_022148123.1	3.6e-10	45.57	probable pectinesterase/pectinesterase inhibitor 39 [Momordica charantia]	[more]
XP_022150325.1	4.7e-10	56.25	probable pectinesterase/pectinesterase inhibitor 44 [Momordica charantia]	[more]
XP_022137308.1	1.4e-09	51.95	probable pectinesterase/pectinesterase inhibitor 39 [Momordica charantia]	[more]
KAG6572150.1	1.4e-09	50.00	putative pectinesterase/pectinesterase inhibitor 40, partial [Cucurbita argyrosp...	[more]

BLAST of HG10015621 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10015621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR03	2.7e-11	54.17	Pectinesterase OS=Momordica charantia OX=3673 GN=LOC111013377 PE=4 SV=1	[more]
A0A6J1D381	1.7e-10	45.57	Pectinesterase OS=Momordica charantia OX=3673 GN=LOC111016876 PE=4 SV=1	[more]
A0A6J1D863	2.3e-10	56.25	Pectinesterase OS=Momordica charantia OX=3673 GN=LOC111018522 PE=4 SV=1	[more]
A0A6J1C9Z6	6.6e-10	51.95	Pectinesterase OS=Momordica charantia OX=3673 GN=LOC111008805 PE=4 SV=1	[more]
A0A6J1KPG6	1.9e-09	46.84	Pectinesterase OS=Cucurbita maxima OX=3661 GN=LOC111496427 PE=4 SV=1	[more]

BLAST of HG10015621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 26..104 e-value: 3.4E-7 score: 32.0
IPR000070	Pectinesterase, catalytic	PFAM	PF01095	Pectinesterase	coord: 26..95 e-value: 6.4E-5 score: 21.8
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 27..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015621.1	HG10015621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0030599	pectinesterase activity