HG10015609 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015609
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Location	Chr02: 28091164 .. 28096133 (+)
RNA-Seq Expression	HG10015609
Synteny	HG10015609

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGAGGAAACAGTCGTTGGCCTCCGCTAGCAATCACCGATCTCCCAGAAGAATACGACCACGACGAAGATGAAGAAGAAGAAGAAGAAGACATGGCTAAAAAAGGAAGATGGTGTTTAAGGTTAGGGAAACTATGAGCTTAGTTTAAAAACAATAGGAGAAAGAATAAGGCATGTATTCTTTTTGGTTACTCTCCAATGGACCAATAATGGATAAATAGTTCTTTTGGATATATATATATATATATATATTACAAATCGATACATTTTTTTAGTCTTTTAGTTAGTTAATTAATTTTTGTTCACTTACCAAAGTGAGTTTAGCTCAACAAGATAATTGACATGACTTTTTTCATTAAAGGTTGAGGCTCGATCCCCCATCTCCGTTATTATTATACTAAAAAAAAAAAAACTTTTGTCCATAGTTAGAAGGGTGATTCCTCAAACTATCTTTGAACTATAACGATGGTTGGGCTTCTATACTAAATTTTTTAAAAAAATTAAATGGTAAAAATAAAGAGGTCACATTCGATAACTACCTTAGTTTTTGAAAATTTTGTGTTTGTTTACTCGCAAAATTTTTAATCTTAGGTAATATTTGAATTCTAAGTCAAATTCCAGAATATAATAAAATAGATTTTTAAGAAATATGTTTTTTAGTTTTCAAATCTTGGCGTATGAAGCTTGAAAACATTGTTAGACAAAGTAGATATGTATAACGTAGGAAACAAACTCATATATGGAAGTAGTGTTTATAAGGTTATAAAAAATAATAATAATGAAAACAAAAGACCAAGGCAGCCTATTTTGATGATTAATTGGTTTTTAAAAATTAAGATGATAAACACTACATCCACATGTAGGTTTCATTGTATTATTATCTACTTTTTATCAATGTTTCAAAAATTCAAACAAACTCTTGAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTTGTTTTTATTTTGAAATTTGTCTAAAAATTCATATATGTTTCCTACACAAAAAATGAAAACTATTGGATAAAATGAGCATAGCTTAACCGGTATGCTTGCATTATCAACCTCGAAGTCAGAGGTTTAATTTTCATACCCCACATATTGTCAAATAAATAAAACCATTATAAAGAAAATGTGAGTAAATCAATCATAATTCTTAAAAACAAAGGTCTCATTTGGTAATTATTTTATTTATTTATATTTATCTTCCCCTAAACTCTATTTTAGGCTTTTACATTTTCTCAAGGAATATTTGATGTCTTATTCAGAATTTTAAAACAAAAACAAGGTTTTAAAAAATAGGGTCTTGTTTGATATCTATTTGGTTTTTTGTTTTTAGTTTTTGAAAATGAAGCCTATTAACTCCCCTCTCACCCTTAAATGTCTTGCTTTCTTATCTATTTTGTTCCTACGTTTTCAAAAAATCAAGCCAAAATTTGAAAACTAAAAAAAATAATTTTTTAAAAACAAAACTTAAAAAAAATTGGCTAAGAATTCAATATGTGTAGTCAAGAAATGTGCCAACTATGGTAAGAAAATGTGGATAAATAGGCTTAAGTTTCAAAACAAAAAAACAAAATGGTTACCAAACTGGGCCATACTTTTAGTTTTCAAATTTTCACTTGATTTTTTAAAATATTAATAAAAAGTGGGTAATAAACAAAGAAAATTATGGGGAAATAGTATTTATAAATTTAGTTTTGCAAAATTCAAAATTAAATAAACAAATAAATTAAGGGCTCTTTTCAAATATAGAAAAATGAACCAAACTATTTACAAATATAGAAAATTTTTAGATCGATCTATCACTGATAGACTGTAAAATTTTTCTATATTTGTAAATAGTTGGGGGATTTTTAAAAATAGGAAAACAAGGAAAACTATTTACACAAAATAACAAAAAAATTTAGATAGTTGTGATAGACGATAAAGTCTATTAGGATTTATCAGTAATAGAAATGATAGAAGTCTATCACTGATAGATGCTGATAGAAGTCTATCAACATCTATTAATATTGTTTTGTTATTTTCTATAAATAGTTTGAAATTCTTTTTATCACTAAAAATTATCCTAACTAGTTTGATATTTTTTCAATTTTCCATAAATTAATTAATTTTTTAAAAAATAGCCTATACAACTTTCGAACTTCTGTAACCGGGAAAAAATTTCCCCAATCAACTTTGCTGTTAAGAAAACAAAGGATTTGCTGACACGTGTAATTCATGAATCCCAATTCTGATTCCATTTTGCTCATTGTTTCCACTTTCCAGCGCACGAACCACGCTGCATCAATCCTCCCGTCTTTTCTTTGCTAAAGCCCCCAAATTTTTCGAAAATTATCAAAATAGCTCTCTCAAGTTTCCATTCTTAAAAACTAGTATTCTTTTTTTAAACTCGGTTCATCTCGATTGAGATTGACCATCGAAATTTAGATAAAAAGTTAATTATTTTCAATTGTTTTGGGTACATCTCAGAAAGGATTAACGTCGAAATTCTACTAATTTTTCTAAATATTATGTAATCTTCTCAAATCTTATATCTTTTTAAAATTTCTCCAAATTTGCTTAGCTTTACCAAATATTATATCAAATTCTTACGGAAATTTTCAAATACTTAGCTCAATTTATATTTTCGATTTTCCAAATCTCCAAATGAATTTACCAATTAACTCAATTTTCCAAATGAACCTCAATTGATTGCATTTTAATTTTTAAAATTTAATATTAATTTTGCAAAAAAAAAATAAGTAAGATTTAGGAAATATATAAAATCTCGAGCATGATTAACACTGAAATTCTATATATTTAGGTTTTCTCGATGAATTCTTGGGCAAATTAACATCGAGATTCAAAATTTTATCCTTCCCAAATTTTGAAAATCAATAGTCAATTACTTGAGATCCATAAAAAAAAAAAAAAAATCATTTGGATAATTGGTAAATCTATTTGGAAATTTGAAAATTCAGATAATTGGTGAAACATAAATAATTATGTAAGAATTTGATATAATATTTGGTAATGATAACCGAATTTGGAGAAAATTTAAAAAAATATAAGATTTGAGAAGATTACATAATATTTGAAAAAAACAGTAGAATCTCGGCTCAAGATGTATCGGGAAAGCCCAAAACAATTGATAAATTTGAAAAAAATTAATTTTTTTTATCTAAATCTTTGTGGTCGAGGACGAGATGGACCGAAAAAATTATTTTAACGATTATTTAAAAAGAGTGCTAGTTTTGAATGATGGAAATTTGAGAAGACTATTTCAGACAATTTCTCGAAATATTTCTCAAATTAATGAGGTACCAATGGACAATAAGATAGTAACTATTTTGTAAAAATTATGAGCTCTTTTATATACGAGAATTTCTACTCAATCTAATTTGTTTGAGTATTATGGACCTTAAAATTATATTAAATAAAGAGCAATAATAAGATACAACTTTTTTTTTTATTATATAATTAAATATAAGATTTGAGAATACATTATAGTTTTACTGTTTATCTACAATAGATCTCGATAGACTACTATGTCACGATAGATAATAAATAGTAGTCTATCATGGTCTATTGCAGATAGATAGTAAAATTTTGCTATATTTGTAAATATTTTAGTTTTTTTTTTATATTTGAAAACAACCATAATTGAAATACAATATTTGGGAAAATTTCACATATAGAAAAGATGTCAAACTATTTACAGAAAATAGCAAAAAAATAAATAAATATTGATAGACATCGATAGACTTCTATCAACATTTATAAGTATAGACTTCTATCATTTCTGTTACTAATAGATCCTAATAAATTTCTATCAATTTATATCACAACTATCTAAAAATGTTACTATTTTATATAAATAGTTTCCTTATTTTTCTATTTTAAAAAATTCATCTATATATTTTATAATTTAACTTTTAAAATTGATTAAAACTATAAAGACTCAGGCCATATTTACTTTTACATAATCATAATTATTGCGATGGTAATTAATTTTTTTTATTATTCATAATTCAACCAGTTTTTTTTCAAACATATTTAAATAGATTACATTTTTCATATTAGGATTGATGGAGTAAATGTGGCCTAATCAAACCAATTCCAGATTACATGACCAAAATGATATCTCGATTATTTCAAAGAAGTCTCCCGTTAATATCCCCTAAACAAATTTTTTGCCGCCAATAGCTTCGATGGCGGGAACCAATGATCGGAGGAAACACCATCGAAACGCCGTAATAGAGAGAGGAAGAGAGTTTTGGTAGACTGAATGATCATCGATGAAATGACGCTCGTCAAGGCCTTATTTTAGGTTTTGCATTCTCTTATTCTACTTTTCGCATATCTGATATCCTTCCGATTGTCGAATTTTTGCATATGAATTTGAGAATCACTTTGTTTTCCAATGTTCACTCGATTCGATCTCAGAGCCGATAATGTATGTATGAATGCTTGTACTGCGGGCGTTTGTATTCGAAAGGAAACGCCGAAGAACAGAGAGAGGAATCGGCAATGTTTTCTCAGGAGCCGATCCTTAAATGAGCTTCGAGGCCTTGTATAATGAATGACCGTCGATGAAGTTGGTCGAGTTCTTGTTTTAGGTTTTTGTATTTTTCTTATTCGAATTTTCGCATCATATTTCGGGATACGAATTTGAGAACCTTTTTGTTCTTGAAAACATTCGTCCTCAGGACCAGTTGCGTATGGATACTCGGACTGTGGTTGTTGTTCCTATGTGAAAGTACTTCCGTCTTCTAATTTTTTTCTAATCGTTTCTCATATCACATTATCGCTTGAATCGTTTCATTTTCTTGAGTTTTGATGTTTTGCTTGCAGAATCAATAACATTGAAAGAAGAGAAGAAGAGGAGTTGACCGAAAATTTGAAGGCTAATAAATCAACTGGATGGGCTGTTGATGTCATGGATCCACGGGAGCTGTCACATCCAAAACGCTGA

mRNA sequence

ATGGGTGGAGGAAACAGTCGTTGGCCTCCGCTAGCAATCACCGATCTCCCAGAAGAATACGACCACGACGAAGATGAAGAAGAAGAAGAAGAAGACATGGCTAAAAAAGGAAGATGGTGTTTAAGAATCAATAACATTGAAAGAAGAGAAGAAGAGGAGTTGACCGAAAATTTGAAGGCTAATAAATCAACTGGATGGGCTGTTGATGTCATGGATCCACGGGAGCTGTCACATCCAAAACGCTGA

Coding sequence (CDS)

ATGGGTGGAGGAAACAGTCGTTGGCCTCCGCTAGCAATCACCGATCTCCCAGAAGAATACGACCACGACGAAGATGAAGAAGAAGAAGAAGAAGACATGGCTAAAAAAGGAAGATGGTGTTTAAGAATCAATAACATTGAAAGAAGAGAAGAAGAGGAGTTGACCGAAAATTTGAAGGCTAATAAATCAACTGGATGGGCTGTTGATGTCATGGATCCACGGGAGCTGTCACATCCAAAACGCTGA

Protein sequence

MGGGNSRWPPLAITDLPEEYDHDEDEEEEEEDMAKKGRWCLRINNIERREEEELTENLKANKSTGWAVDVMDPRELSHPKR

Homology

[Close]

BLAST of HG10015609 vs. ExPASy Swiss-Prot
Match: Q9SEZ6 (Ribonuclease H2 subunit A OS=Arabidopsis thaliana OX=3702 GN=At2g25100 PE=2 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 4.5e-04
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 46 IERREEEELTENLKANKSTGWAVDVMDPRELS 78
          ++  + EEL E+LK +KS GWAVDV+DPRELS
Sbjct: 57 LKEEKREELYESLKLDKSLGWAVDVIDPRELS 88

[Close]

BLAST of HG10015609 vs. TAIR 10
Match: AT2G25100.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.2e-05
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 46 IERREEEELTENLKANKSTGWAVDVMDPRELS 78
          ++  + EEL E+LK +KS GWAVDV+DPRELS
Sbjct: 57 LKEEKREELYESLKLDKSLGWAVDVIDPRELS 88

[Close]

BLAST of HG10015609 vs. TAIR 10
Match: AT2G25100.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.2e-05
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 46 IERREEEELTENLKANKSTGWAVDVMDPRELS 78
          ++  + EEL E+LK +KS GWAVDV+DPRELS
Sbjct: 57 LKEEKREELYESLKLDKSLGWAVDVIDPRELS 88

The following BLAST results are available for this feature:

BLAST of HG10015609 vs.


Match Name	E-value	Identity	Description

BLAST of HG10015609 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEZ6	4.5e-04	62.50	Ribonuclease H2 subunit A OS=Arabidopsis thaliana OX=3702 GN=At2g25100 PE=2 SV=2	[more]

BLAST of HG10015609 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of HG10015609 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25100.1	3.2e-05	62.50	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G25100.2	3.2e-05	62.50	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 81..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015609.1	HG10015609.1	mRNA