HG10015565 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015565
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr02: 27744368 .. 27744842 (-)
RNA-Seq Expression	HG10015565
Synteny	HG10015565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGCTCGTCTCCCGTCGTTCCATTTCCCCGGTCCGTCTTCTCGGCGGCGGAGACCATCCGACCACCGCAGAGCTCCGAGATGCCACTGCGGCGTCAGCGATGAAGGTCCTCAGCCGCACTCTGTCTCTGTAATATCAACGATCTTCGTCTCTTTACTTTCTTAAGCACAAATCTCTGTTTGTATGTTCTGCAGAGAACCAGAAGGACATCGTGGAAGCGAATTTGACGTTGTTGAGAGCGAGAATGGAGGATTTGAGGAAGAAGGAGCGGCGGATTCCGGTTCCGGCACGGCGCGAAGGACTCGAATTCGACAATGGCTGTAAGTATTTGTCGATGAGCGACGGCACGAAGTTCGATCGTGATTTTGATTGCAAGATTTTGAAGAATTTTGCCCTAATTTCAGAGTGTTTGGAGGTGGTGACTACGGTTGGCGGTGCAGTTGGCTGTTTTTTGTGGGTGGATCTTTAG

mRNA sequence

ATGGCTTCCGCTCGTCTCCCGTCGTTCCATTTCCCCGGTCCGTCTTCTCGGCGGCGGAGACCATCCGACCACCGCAGAGCTCCGAGATGCCACTGCGGCGTCAGCGATGAAGAGAACCAGAAGGACATCGTGGAAGCGAATTTGACGTTGTTGAGAGCGAGAATGGAGGATTTGAGGAAGAAGGAGCGGCGGATTCCGGTTCCGGCACGGCGCGAAGGACTCGAATTCGACAATGGCTGTAAGTATTTGTCGATGAGCGACGGCACGAAGTTCGATCGTGATTTTGATTGCAAGATTTTGAAGAATTTTGCCCTAATTTCAGAGTGTTTGGAGGTGGTGACTACGGTTGGCGGTGCAGTTGGCTGTTTTTTGTGGGTGGATCTTTAG

Coding sequence (CDS)

ATGGCTTCCGCTCGTCTCCCGTCGTTCCATTTCCCCGGTCCGTCTTCTCGGCGGCGGAGACCATCCGACCACCGCAGAGCTCCGAGATGCCACTGCGGCGTCAGCGATGAAGAGAACCAGAAGGACATCGTGGAAGCGAATTTGACGTTGTTGAGAGCGAGAATGGAGGATTTGAGGAAGAAGGAGCGGCGGATTCCGGTTCCGGCACGGCGCGAAGGACTCGAATTCGACAATGGCTGTAAGTATTTGTCGATGAGCGACGGCACGAAGTTCGATCGTGATTTTGATTGCAAGATTTTGAAGAATTTTGCCCTAATTTCAGAGTGTTTGGAGGTGGTGACTACGGTTGGCGGTGCAGTTGGCTGTTTTTTGTGGGTGGATCTTTAG

Protein sequence

MASARLPSFHFPGPSSRRRRPSDHRRAPRCHCGVSDEENQKDIVEANLTLLRARMEDLRKKERRIPVPARREGLEFDNGCKYLSMSDGTKFDRDFDCKILKNFALISECLEVVTTVGGAVGCFLWVDL

Homology

[Close]

BLAST of HG10015565 vs. NCBI nr
Match: XP_038893300.1 (uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida])

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-48
Identity = 102/121 (84.30%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASARLPSFHFPGPSSRRRRPSDHRRAPRCHCGVSDEENQKDIVEANLTLLRARMEDLRK 60
           MASAR PSFHF  P S RRRPSDHRRAPRCH GV DEENQKDIV+ANLT+LRARMEDLRK
Sbjct: 1   MASARFPSFHFHSPVSTRRRPSDHRRAPRCHGGVGDEENQKDIVDANLTVLRARMEDLRK 60

Query: 61  KERRIPVPARREGLEFDNGCKYLSMSDGTKFDRDFDCKILKNFALISECLEVVTTVGGAV 120
           KERRIP+PARR GLEFDNG +YLSMSDG KFDR FD KILK FALI+ CLEVVTTVGGAV
Sbjct: 61  KERRIPLPARRGGLEFDNGWRYLSMSDGAKFDRSFDGKILKKFALIAGCLEVVTTVGGAV 120

Query: 121 G 122
           G
Sbjct: 121 G 121

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BLAST of HG10015565 vs. NCBI nr
Match: XP_022150638.1 (uncharacterized protein LOC111018723 [Momordica charantia])

HSP 1 Score: 152.1 bits (383), Expect = 3.2e-33
Identity = 87/125 (69.60%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 2   ASARLPSFHFPGPSSRRRRP-SDHRRAPRCHCGVS-DEENQKDIVEANLTLLRARMEDLR 61
           +SA L SFHF  PSS RRRP +DHRRAPRCH GVS DEENQKDIVEANLT+LR RMEDLR
Sbjct: 6   SSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDLR 65

Query: 62  KKERRIPVPARREGLEFDNGCKYLSMSDGTKFDRDFDCKILKNFALISECLEVVTTVGGA 121
           KKERRIP    R  +EFDN   Y+S SD  K DRD + K++KNFALISECLEV++  GGA
Sbjct: 66  KKERRIPASGGR--IEFDNCWSYMSRSD-AKLDRDCERKMVKNFALISECLEVISMAGGA 125

Query: 122 VGCFL 125
           VG  L
Sbjct: 126 VGLVL 127

[Close]

BLAST of HG10015565 vs. NCBI nr
Match: XP_008446686.1 (PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo] >KAA0034606.1 uncharacterized protein E6C27_scaffold65G006220 [Cucumis melo var. makuwa] >TYK09158.1 uncharacterized protein E5676_scaffold475G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-30
Identity = 85/125 (68.00%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 2   ASARLPSFH-FPGPSSRRRRPSDHRRAPRCHCGVSDEENQKDIVEANLTLLRARMEDLRK 61
           +SA LPSFH F  PSSR+RRPSDH  APRCH    DEEN+KDIVEANLT+LR RMEDLRK
Sbjct: 3   SSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRK 62

Query: 62  KERR--IPVPARREGL-EFDNGCKYLSMSDGTKFDRD-FDCKILKNFALISECLEVVTTV 121
           KERR  IP+P R+ G+ EFD+G +YLS    +K D   FD K LKN ALIS CLEVV+TV
Sbjct: 63  KERRIPIPIPIRQRGMEEFDDGRRYLS----SKLDGGCFDGKKLKNGALISGCLEVVSTV 122

[Close]

BLAST of HG10015565 vs. NCBI nr
Match: XP_038893301.1 (uncharacterized protein LOC120082131 isoform X2 [Benincasa hispida])

HSP 1 Score: 140.6 bits (353), Expect = 9.5e-30
Identity = 76/117 (64.96%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 1   MASARLPSFHFPGPSSRRRRPSDHRRAPRCHCGVSDEENQKDIVEANLTLLRARMEDLRK 60
           MASAR PSFHF  P S RRRPSDHRRAPRCH GV DEENQKDIV+ANLT+LRARMEDLRK
Sbjct: 1   MASARFPSFHFHSPVSTRRRPSDHRRAPRCHGGVGDEENQKDIVDANLTVLRARMEDLRK 60

Query: 61  KERRIPVPARREGLEFDNGCKYLSMSD-----------GTKFDRDFDCKILKNFALI 107
           KERRIP+PARR GLEFDNG + L   D           G  F   F C    +F +I
Sbjct: 61  KERRIPLPARRGGLEFDNGWRVLGGGDYGWRCSWACFCGWIFRHLFGCSFSTSFLVI 117

[Close]

BLAST of HG10015565 vs. NCBI nr
Match: XP_011655810.1 (uncharacterized protein LOC105435587 [Cucumis sativus] >KGN52133.1 hypothetical protein Csa_008386 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 81/124 (65.32%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 1   MASARLPSFH-FPGPSSRRRRP-SDHRRAPRCHCGVSDEENQKDIVEANLTLLRARMEDL 60
           MASA LPSFH F  PSS RRRP SDHR APRCH    DEEN+KDIVEANLT+LR RMEDL
Sbjct: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERRIPVPARREGL-EFDNGCKYLSMSDGTKFDRDFDCKILKNFALISECLEVVTTVG 120
           RKKER IP+  R+ G+ E D+G +YL   DG  FD     K +KN  LIS CLEVV+ VG
Sbjct: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDG----KKMKNCGLISGCLEVVSRVG 120

Query: 121 GAVG 122
           GAVG
Sbjct: 121 GAVG 120

[Close]

BLAST of HG10015565 vs. ExPASy TrEMBL
Match: A0A6J1D9Z1 (uncharacterized protein LOC111018723 OS=Momordica charantia OX=3673 GN=LOC111018723 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-33
Identity = 87/125 (69.60%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 2   ASARLPSFHFPGPSSRRRRP-SDHRRAPRCHCGVS-DEENQKDIVEANLTLLRARMEDLR 61
           +SA L SFHF  PSS RRRP +DHRRAPRCH GVS DEENQKDIVEANLT+LR RMEDLR
Sbjct: 6   SSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDLR 65

Query: 62  KKERRIPVPARREGLEFDNGCKYLSMSDGTKFDRDFDCKILKNFALISECLEVVTTVGGA 121
           KKERRIP    R  +EFDN   Y+S SD  K DRD + K++KNFALISECLEV++  GGA
Sbjct: 66  KKERRIPASGGR--IEFDNCWSYMSRSD-AKLDRDCERKMVKNFALISECLEVISMAGGA 125

Query: 122 VGCFL 125
           VG  L
Sbjct: 126 VGLVL 127

[Close]

BLAST of HG10015565 vs. ExPASy TrEMBL
Match: A0A5A7SXL4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001490 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 9.3e-31
Identity = 85/125 (68.00%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 2   ASARLPSFH-FPGPSSRRRRPSDHRRAPRCHCGVSDEENQKDIVEANLTLLRARMEDLRK 61
           +SA LPSFH F  PSSR+RRPSDH  APRCH    DEEN+KDIVEANLT+LR RMEDLRK
Sbjct: 3   SSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRK 62

Query: 62  KERR--IPVPARREGL-EFDNGCKYLSMSDGTKFDRD-FDCKILKNFALISECLEVVTTV 121
           KERR  IP+P R+ G+ EFD+G +YLS    +K D   FD K LKN ALIS CLEVV+TV
Sbjct: 63  KERRIPIPIPIRQRGMEEFDDGRRYLS----SKLDGGCFDGKKLKNGALISGCLEVVSTV 122

[Close]

BLAST of HG10015565 vs. ExPASy TrEMBL
Match: A0A1S3BFP0 (uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 9.3e-31
Identity = 85/125 (68.00%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 2   ASARLPSFH-FPGPSSRRRRPSDHRRAPRCHCGVSDEENQKDIVEANLTLLRARMEDLRK 61
           +SA LPSFH F  PSSR+RRPSDH  APRCH    DEEN+KDIVEANLT+LR RMEDLRK
Sbjct: 3   SSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRK 62

Query: 62  KERR--IPVPARREGL-EFDNGCKYLSMSDGTKFDRD-FDCKILKNFALISECLEVVTTV 121
           KERR  IP+P R+ G+ EFD+G +YLS    +K D   FD K LKN ALIS CLEVV+TV
Sbjct: 63  KERRIPIPIPIRQRGMEEFDDGRRYLS----SKLDGGCFDGKKLKNGALISGCLEVVSTV 122

[Close]

BLAST of HG10015565 vs. ExPASy TrEMBL
Match: A0A0A0KRA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.7e-29
Identity = 81/124 (65.32%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 1   MASARLPSFH-FPGPSSRRRRP-SDHRRAPRCHCGVSDEENQKDIVEANLTLLRARMEDL 60
           MASA LPSFH F  PSS RRRP SDHR APRCH    DEEN+KDIVEANLT+LR RMEDL
Sbjct: 1   MASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERRIPVPARREGL-EFDNGCKYLSMSDGTKFDRDFDCKILKNFALISECLEVVTTVG 120
           RKKER IP+  R+ G+ E D+G +YL   DG  FD     K +KN  LIS CLEVV+ VG
Sbjct: 61  RKKERGIPIQIRQRGMEELDDGGRYLWKLDGGCFDG----KKMKNCGLISGCLEVVSRVG 120

Query: 121 GAVG 122
           GAVG
Sbjct: 121 GAVG 120

The following BLAST results are available for this feature:

BLAST of HG10015565 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893300.1	1.6e-48	84.30	uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida]	[more]
XP_022150638.1	3.2e-33	69.60	uncharacterized protein LOC111018723 [Momordica charantia]	[more]
XP_008446686.1	1.9e-30	68.00	PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo] >KAA0034606.1 unc...	[more]
XP_038893301.1	9.5e-30	64.96	uncharacterized protein LOC120082131 isoform X2 [Benincasa hispida]	[more]
XP_011655810.1	1.8e-28	65.32	uncharacterized protein LOC105435587 [Cucumis sativus] >KGN52133.1 hypothetical ...	[more]

BLAST of HG10015565 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10015565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9Z1	1.5e-33	69.60	uncharacterized protein LOC111018723 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5A7SXL4	9.3e-31	68.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFP0	9.3e-31	68.00	uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=...	[more]
A0A0A0KRA6	8.7e-29	65.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1	[more]

BLAST of HG10015565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR38225	PROTEIN, PUTATIVE-RELATED	coord: 1..122
None	No IPR available	PANTHER	PTHR38225:SF3	SUBFAMILY NOT NAMED	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015565.1	HG10015565.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane