HG10015527 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015527
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	VQ motif-containing protein 8
Location	Chr02: 27422322 .. 27422759 (+)
RNA-Seq Expression	HG10015527
Synteny	HG10015527

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAGAGATTCTCGTTTCATTCGCAAGCCTCAGCTCCGGCAGCCCGTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCAGCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCACCCCCGCCGCCGCCTAACGCCGCCGACAATGAATCTTCGTCGGGTCTGACGACGGAGGAGGAGAATGAATGGGGAGATCGGAAACAGAGTCAGAGTCAGAAACAGAGTGTAGTGCAGAGGCAGAGTAATTCTTCTCTTCACAGATATTCTTCTGATCTTACGACGCCGTTTTCTTCCCCTGCTTTGATTAATTCCTTGTCCCCCTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA

mRNA sequence

ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAGAGATTCTCGTTTCATTCGCAAGCCTCAGCTCCGGCAGCCCGTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCAGCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCACCCCCGCCGCCGCCTAACGCCGCCGACAATGAATCTTCGTCGGGTCTGACGACGGAGGAGGAGAATGAATGGGGAGATCGGAAACAGAGTCAGAGTCAGAAACAGAGTGTAGTGCAGAGGCAGAGTAATTCTTCTCTTCACAGATATTCTTCTGATCTTACGACGCCGTTTTCTTCCCCTGCTTTGATTAATTCCTTGTCCCCCTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA

Coding sequence (CDS)

ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAGAGATTCTCGTTTCATTCGCAAGCCTCAGCTCCGGCAGCCCGTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCAGCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCACCCCCGCCGCCGCCTAACGCCGCCGACAATGAATCTTCGTCGGGTCTGACGACGGAGGAGGAGAATGAATGGGGAGATCGGAAACAGAGTCAGAGTCAGAAACAGAGTGTAGTGCAGAGGCAGAGTAATTCTTCTCTTCACAGATATTCTTCTGATCTTACGACGCCGTTTTCTTCCCCTGCTTTGATTAATTCCTTGTCCCCCTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA

Protein sequence

MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSSGLTTEEENEWGDRKQSQSQKQSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF

Homology

[Close]

BLAST of HG10015527 vs. NCBI nr
Match: XP_038893302.1 (VQ motif-containing protein 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 237.3 bits (604), Expect = 8.5e-59
Identity = 131/157 (83.44%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLT 60
           MSPPKSCEINGPRPSPLLIH+DSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLT
Sbjct: 1   MSPPKSCEINGPRPSPLLIHKDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLT 60

Query: 61  GFTPPPPPPPNAA-----------DNESSSGLTTEEE-NEWGDRKQSQSQKQSVVQRQSN 120
           GF PPPPPPP+ A           DN+SSSGLTTEEE NE GD+KQS   KQ +VQRQSN
Sbjct: 61  GFNPPPPPPPSNALSLSFSERNFNDNDSSSGLTTEEEINECGDQKQSVVLKQ-LVQRQSN 120

Query: 121 SSLHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF 146
           SSL RYSSD+TTPFSSPALINSLSPSFMEFLKALPEF
Sbjct: 121 SSLLRYSSDVTTPFSSPALINSLSPSFMEFLKALPEF 156

[Close]

BLAST of HG10015527 vs. NCBI nr
Match: XP_008466850.1 (PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA0034563.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa] >TYK09116.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 2.0e-44
Identity = 100/146 (68.49%), Postives = 117/146 (80.14%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLT 60
           MSPPKS +ING RPSPLLIH DSR +RKPQLRQP+IIYTHSPKIIHT PKDFMALVQRLT
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60

Query: 61  GFTPPPPPPP-NAADNESSSGLTTEEENEWGDRKQSQSQKQSVVQRQSNSSLHRYSSDLT 120
           GF PPPP P  N+ DN+S+SG+T+EE+               V ++QSN S+ +YSSD+T
Sbjct: 61  GFNPPPPQPERNSNDNDSTSGVTSEED---------------VNEKQSNCSVLKYSSDVT 120

Query: 121 TPFSSPALINSLSPSFMEFLKALPEF 146
           TPFSSPA ++SLSPSFM+FLKALPEF
Sbjct: 121 TPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of HG10015527 vs. NCBI nr
Match: XP_022150646.1 (VQ motif-containing protein 8, chloroplastic [Momordica charantia])

HSP 1 Score: 161.8 bits (408), Expect = 4.5e-36
Identity = 104/166 (62.65%), Postives = 115/166 (69.28%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHRDSRFIRK--PQLRQPVIIYTHSPKIIHTQPKDFMALVQR 60
           MSP KSC+INGPRPSPLLIH+ SR IRK  PQLRQP+IIYTHSPKIIHTQPKDFMALVQR
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGFTPPPPPPPNAA--------DNESSSGLTTEEENEWGDRKQSQSQ-KQSVVQRQSNS 120
           LTGFTPPPPP  + +        DN+SSS LT  EE   GD     S  K+   Q QS+S
Sbjct: 61  LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLT--EEVNCGDHNHHPSYVKEVQSQSQSHS 120

Query: 121 SLH----------RYSSDLTTPFSSPALINSLSPSFMEFLKALPEF 146
            L           RY+ D T+ F+SP L NSLSPSFMEFLK LPEF
Sbjct: 121 FLADVPLFTPAGLRYAPDATS-FASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of HG10015527 vs. NCBI nr
Match: KGN52621.2 (hypothetical protein Csa_008052 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 8.6e-27
Identity = 71/97 (73.20%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MSPPKSCEINGPRPSPLLIHRDSRFIRKP-QLRQPVIIYTHSPKIIHTQPKDFMALVQRL 60
          MSPPKS EINGPRPSPLLIH  SR IRKP QLRQP+IIYTHSPKIIHT PKDFMALVQRL
Sbjct: 1  MSPPKSSEINGPRPSPLLIHNHSRLIRKPVQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61 TGFTPPPPPP----------PNAADNESSSGLTTEEE 87
          TG  PPPP P           N  DN+SSSG+TTEE+
Sbjct: 61 TGCNPPPPLPLPSAKPSLSERNLNDNDSSSGVTTEED 97

[Close]

BLAST of HG10015527 vs. NCBI nr
Match: KAG7013019.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-26
Identity = 81/149 (54.36%), Postives = 92/149 (61.74%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHRDSRFIRK----PQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSPPK   I+GPRP PLL+H+ SR IRK    PQLR+PVIIYTHSPKIIHTQPKDFMALV
Sbjct: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFTPPPPPPPNAADNESSSGLTTEEENEWGDRKQSQSQKQSVVQRQSNSSLHRYSS 120
           QRLTG +PP      + +N+SSS +T E+ N                             
Sbjct: 61  QRLTGCSPPNADKAPSDNNDSSSVVTEEDSN----------------------------C 118

Query: 121 DLTTPFSSPALINSLSPSFMEFLKALPEF 146
            L TP S   L+NSLSPSFMEFLK LPEF
Sbjct: 121 PLFTPRS---LVNSLSPSFMEFLKGLPEF 118

[Close]

BLAST of HG10015527 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 59/152 (38.82%), Postives = 78/152 (51.32%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHRDSRFIRK---------PQLR-QPVIIYTHSPKIIHTQPK 60
           M P +  EING RPS L +  +S  I+K         P  R  PVIIY HSPK+IHT+ +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFTPPPPPPPNAADNESSSGLTTEEENEWGDRKQSQSQKQSVVQRQSNSS 120
           DFMALVQRLTG             +ESSS + TEE N  GD   +    Q   QRQ  + 
Sbjct: 61  DFMALVQRLTGL----DEIIRRNTSESSSSVVTEEVNV-GDDNTAAPFSQDRTQRQKLTD 120

Query: 121 LHRYSSDLTTPFSSPALINSLSPSFMEFLKAL 143
           +  ++    T F SP  +  +SP+  +  + L
Sbjct: 121 MPLFTPSSMTLFGSPTQLMYMSPNRTDSFRPL 147

[Close]

BLAST of HG10015527 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.9e-11
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 12  PRPSPLLIHRDSRFIRKP----------QLRQPVIIYTHSPKIIHTQPKDFMALVQRLTG 64
           P P  L +++DS  I+KP          + R PVIIYTH+P+IIHT PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of HG10015527 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-09
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 5  KSCEINGPRPSPLLIHRDSRFIRKPQL----------------RQPVIIYTHSPKIIHTQ 64
          +  +I GPRPSPL +H+DS  I+KP                  R+PV+IY  SPK++H  
Sbjct: 20 RQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 79

[Close]

BLAST of HG10015527 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.0e-06
Identity = 39/108 (36.11%), Postives = 53/108 (49.07%), Query Frame = 0


Query: 4   PKSCEINGPRPSPLLIHRDS-RFIRKPQLRQ-----------------------PVIIYT 63
           P+S    GP+P+PL +  DS + I+KP L                         PV IYT
Sbjct: 6   PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

Query: 64  HSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSSGLTTEEEN 88
            +P+IIHT P +FM LVQRLTG T        +  + SSS  T+E ++
Sbjct: 66  VTPRIIHTHPNNFMTLVQRLTGQT------STSTTSSSSSSSTSEPKD 107

[Close]

BLAST of HG10015527 vs. ExPASy TrEMBL
Match: A0A5D3CFH5 (VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001070 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.8e-45
Identity = 100/146 (68.49%), Postives = 117/146 (80.14%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLT 60
           MSPPKS +ING RPSPLLIH DSR +RKPQLRQP+IIYTHSPKIIHT PKDFMALVQRLT
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60

Query: 61  GFTPPPPPPP-NAADNESSSGLTTEEENEWGDRKQSQSQKQSVVQRQSNSSLHRYSSDLT 120
           GF PPPP P  N+ DN+S+SG+T+EE+               V ++QSN S+ +YSSD+T
Sbjct: 61  GFNPPPPQPERNSNDNDSTSGVTSEED---------------VNEKQSNCSVLKYSSDVT 120

Query: 121 TPFSSPALINSLSPSFMEFLKALPEF 146
           TPFSSPA ++SLSPSFM+FLKALPEF
Sbjct: 121 TPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of HG10015527 vs. ExPASy TrEMBL
Match: A0A1S3CS67 (VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504155 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.8e-45
Identity = 100/146 (68.49%), Postives = 117/146 (80.14%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLT 60
           MSPPKS +ING RPSPLLIH DSR +RKPQLRQP+IIYTHSPKIIHT PKDFMALVQRLT
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60

Query: 61  GFTPPPPPPP-NAADNESSSGLTTEEENEWGDRKQSQSQKQSVVQRQSNSSLHRYSSDLT 120
           GF PPPP P  N+ DN+S+SG+T+EE+               V ++QSN S+ +YSSD+T
Sbjct: 61  GFNPPPPQPERNSNDNDSTSGVTSEED---------------VNEKQSNCSVLKYSSDVT 120

Query: 121 TPFSSPALINSLSPSFMEFLKALPEF 146
           TPFSSPA ++SLSPSFM+FLKALPEF
Sbjct: 121 TPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of HG10015527 vs. ExPASy TrEMBL
Match: A0A0A0KT78 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.6e-39
Identity = 103/158 (65.19%), Postives = 115/158 (72.78%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHRDSRFIRKP-QLRQPVIIYTHSPKIIHTQPKDFMALVQRL 60
           MSPPKS EINGPRPSPLLIH  SR IRKP QLRQP+IIYTHSPKIIHT PKDFMALVQRL
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRKPVQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61  TGFTPPPPPP----------PNAADNESSSGLTTEEENEWGDRKQSQSQKQSVVQRQSNS 120
           TG  PPPP P           N  DN+SSSG+TTEE+               + ++QSN 
Sbjct: 61  TGCNPPPPLPLPSAKPSLSERNLNDNDSSSGVTTEED---------------INEKQSNC 120

Query: 121 SLHRYSS-DLTTPFSSPA-LINSLSPSFMEFLKALPEF 146
           S+ +YSS D+TTPFSSPA L +SLSPSFM+FLKALPEF
Sbjct: 121 SVLKYSSHDVTTPFSSPAFLSSSLSPSFMDFLKALPEF 143

[Close]

BLAST of HG10015527 vs. ExPASy TrEMBL
Match: A0A6J1DC48 (VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018730 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.2e-36
Identity = 104/166 (62.65%), Postives = 115/166 (69.28%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHRDSRFIRK--PQLRQPVIIYTHSPKIIHTQPKDFMALVQR 60
           MSP KSC+INGPRPSPLLIH+ SR IRK  PQLRQP+IIYTHSPKIIHTQPKDFMALVQR
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGFTPPPPPPPNAA--------DNESSSGLTTEEENEWGDRKQSQSQ-KQSVVQRQSNS 120
           LTGFTPPPPP  + +        DN+SSS LT  EE   GD     S  K+   Q QS+S
Sbjct: 61  LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLT--EEVNCGDHNHHPSYVKEVQSQSQSHS 120

Query: 121 SLH----------RYSSDLTTPFSSPALINSLSPSFMEFLKALPEF 146
            L           RY+ D T+ F+SP L NSLSPSFMEFLK LPEF
Sbjct: 121 FLADVPLFTPAGLRYAPDATS-FASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of HG10015527 vs. ExPASy TrEMBL
Match: A0A6P6V8N0 (VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=LOC113717710 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 77/191 (40.31%), Postives = 97/191 (50.79%), Query Frame = 0


Query: 9   INGPRPSPLLIHRDSRFIRKP---------------------QLRQPVIIYTHSPKIIHT 68
           INGPRPSPL I++DS  I+KP                     Q RQPVIIYTHSPKIIHT
Sbjct: 15  INGPRPSPLRINKDSHVIQKPSSMNQVYKKAATEQNTRLSTQQPRQPVIIYTHSPKIIHT 74

Query: 69  QPKDFMALVQRLTGFTPPPPPPPNA-------------ADNESSSGLTTEEENEWGDRKQ 128
           +PKDFMALVQ+LTGF+        A              DN+SSS   T ++   GD   
Sbjct: 75  KPKDFMALVQKLTGFSRSEEQIVEAESKRDDQTITISQEDNDSSS--VTSDDKYEGDNAS 134

Query: 129 SQSQKQSVVQRQSNSSLHRYSSD--LTTP------------------FSSPALINSLSPS 146
              ++ S      N  L+ Y +D  L TP                  F+SP +++SLSPS
Sbjct: 135 DVIKESSSAVSPVNKGLNPYLTDIPLFTPNSNLFSSPQPVFRYPDVVFTSPNIVSSLSPS 194

[Close]

BLAST of HG10015527 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 71.2 bits (173), Expect = 7.5e-13
Identity = 59/152 (38.82%), Postives = 78/152 (51.32%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHRDSRFIRK---------PQLR-QPVIIYTHSPKIIHTQPK 60
           M P +  EING RPS L +  +S  I+K         P  R  PVIIY HSPK+IHT+ +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFTPPPPPPPNAADNESSSGLTTEEENEWGDRKQSQSQKQSVVQRQSNSS 120
           DFMALVQRLTG             +ESSS + TEE N  GD   +    Q   QRQ  + 
Sbjct: 61  DFMALVQRLTGL----DEIIRRNTSESSSSVVTEEVNV-GDDNTAAPFSQDRTQRQKLTD 120

Query: 121 LHRYSSDLTTPFSSPALINSLSPSFMEFLKAL 143
           +  ++    T F SP  +  +SP+  +  + L
Sbjct: 121 MPLFTPSSMTLFGSPTQLMYMSPNRTDSFRPL 147

[Close]

BLAST of HG10015527 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-12
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 12  PRPSPLLIHRDSRFIRKP----------QLRQPVIIYTHSPKIIHTQPKDFMALVQRLTG 64
           P P  L +++DS  I+KP          + R PVIIYTH+P+IIHT PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of HG10015527 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-10
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 5  KSCEINGPRPSPLLIHRDSRFIRKPQL----------------RQPVIIYTHSPKIIHTQ 64
          +  +I GPRPSPL +H+DS  I+KP                  R+PV+IY  SPK++H  
Sbjct: 20 RQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 79

[Close]

BLAST of HG10015527 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-09
Identity = 38/84 (45.24%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 4  PKSCEINGPRPSPLLIHRDS-RFIRKPQLRQ-----------------------PVIIYT 63
          P+S  I GPRP PL +  DS + I+KP L                         PVIIYT
Sbjct: 6  PRSRGILGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYT 65

[Close]

BLAST of HG10015527 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-07
Identity = 39/108 (36.11%), Postives = 53/108 (49.07%), Query Frame = 0


Query: 4   PKSCEINGPRPSPLLIHRDS-RFIRKPQLRQ-----------------------PVIIYT 63
           P+S    GP+P+PL +  DS + I+KP L                         PV IYT
Sbjct: 6   PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

Query: 64  HSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSSGLTTEEEN 88
            +P+IIHT P +FM LVQRLTG T        +  + SSS  T+E ++
Sbjct: 66  VTPRIIHTHPNNFMTLVQRLTGQT------STSTTSSSSSSSTSEPKD 107

The following BLAST results are available for this feature:

BLAST of HG10015527 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893302.1	8.5e-59	83.44	VQ motif-containing protein 8, chloroplastic [Benincasa hispida]	[more]
XP_008466850.1	2.0e-44	68.49	PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA...	[more]
XP_022150646.1	4.5e-36	62.65	VQ motif-containing protein 8, chloroplastic [Momordica charantia]	[more]
KGN52621.2	8.6e-27	73.20	hypothetical protein Csa_008052 [Cucumis sativus]	[more]
KAG7013019.1	2.5e-26	54.36	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]

BLAST of HG10015527 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA36	1.1e-11	38.82	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LS54	8.9e-11	54.84	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q8LGD5	6.4e-09	41.33	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	3.0e-06	36.11	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of HG10015527 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFH5	9.8e-45	68.49	VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS67	9.8e-45	68.49	VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KT78	1.6e-39	65.19	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=...	[more]
A0A6J1DC48	2.2e-36	62.65	VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6P6V8N0	1.3e-17	40.31	VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=...	[more]

BLAST of HG10015527 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68450.1	7.5e-13	38.82	VQ motif-containing protein	[more]
AT3G18360.1	6.3e-12	54.84	VQ motif-containing protein	[more]
AT3G18690.1	4.5e-10	41.33	MAP kinase substrate 1	[more]
AT1G21326.1	2.3e-09	45.24	VQ motif-containing protein	[more]
AT1G21320.1	2.1e-07	36.11	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 39..66 e-value: 1.6E-11 score: 43.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..122
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 7..144
IPR039833	VQ motif-containing protein 8, chloroplastic	PANTHER	PTHR33143:SF42	VQ MOTIF-CONTAINING PROTEIN 8, CHLOROPLASTIC	coord: 7..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015527.1	HG10015527.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0070545	PeBoW complex
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0043021	ribonucleoprotein complex binding