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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCTGCACTTGGGAGCTACAGAGTTTCTACCCTCATGGTGCTCTTATCCAAACCAAAACTCAGATATACTGCAACCAAGCAGGGATTCAGCAATGCTGAAAGACAGGGCTTTCAAAGTGATAGACAAAGGAAGAACTTGGCGCAATCTTATTAATTTAAAGAGGAGAGATATCCATGGACATCCTCTTCCATGGTTTTCAGATTGCTGGAAACTCACTGATGATACTCCCGAAGATCAGCTGGAGTTTTGTCATGTAGTTTAA mRNA sequence ATGCTGCACTTGGGAGCTACAGAGTTTCTACCCTCATGGTGCTCTTATCCAAACCAAAACTCAGATATACTGCAACCAAGCAGGGATTCAGCAATGCTGAAAGACAGGGCTTTCAAAGTGATAGACAAAGGAAGAACTTGGCGCAATCTTATTAATTTAAAGAGGAGAGATATCCATGGACATCCTCTTCCATGGTTTTCAGATTGCTGGAAACTCACTGATGATACTCCCGAAGATCAGCTGGAGTTTTGTCATGTAGTTTAA Coding sequence (CDS) ATGCTGCACTTGGGAGCTACAGAGTTTCTACCCTCATGGTGCTCTTATCCAAACCAAAACTCAGATATACTGCAACCAAGCAGGGATTCAGCAATGCTGAAAGACAGGGCTTTCAAAGTGATAGACAAAGGAAGAACTTGGCGCAATCTTATTAATTTAAAGAGGAGAGATATCCATGGACATCCTCTTCCATGGTTTTCAGATTGCTGGAAACTCACTGATGATACTCCCGAAGATCAGCTGGAGTTTTGTCATGTAGTTTAA Protein sequence MLHLGATEFLPSWCSYPNQNSDILQPSRDSAMLKDRAFKVIDKGRTWRNLINLKRRDIHGHPLPWFSDCWKLTDDTPEDQLEFCHVV
Homology
BLAST of HG10015438 vs. NCBI nr
Match: KAA0034491.1 (DNA-directed RNA polymerase 1B [Cucumis melo var. makuwa] >TYK09045.1 DNA-directed RNA polymerase 1B [Cucumis melo var. makuwa]) HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09 Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 0
Query: 5 GATEFLPSWCSYPNQNSDILQPSRDSAMLKDRAFKVIDKGRTWRNLINLKRRDIHGHPLP 64
GAT++LPSW S ++SDILQP RDSAML D +F K +L L R IHG LP
Sbjct: 978 GATKYLPSWLSDLYESSDILQPIRDSAMLTDSSFCSEKKEELDASL--LIRGGIHGRTLP 1037
Query: 65 WFSDCWKLTDDTP 78
WFSDCW +T ++P
Sbjct: 1038 WFSDCW-ITGNSP 1047
BLAST of HG10015438 vs. ExPASy TrEMBL
Match: A0A5A7SYG2 (DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00320 PE=3 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 6.1e-10 Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 0
Query: 5 GATEFLPSWCSYPNQNSDILQPSRDSAMLKDRAFKVIDKGRTWRNLINLKRRDIHGHPLP 64
GAT++LPSW S ++SDILQP RDSAML D +F K +L L R IHG LP
Sbjct: 978 GATKYLPSWLSDLYESSDILQPIRDSAMLTDSSFCSEKKEELDASL--LIRGGIHGRTLP 1037
Query: 65 WFSDCWKLTDDTP 78
WFSDCW +T ++P
Sbjct: 1038 WFSDCW-ITGNSP 1047
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0034491.1 | 1.3e-09 | 53.42 | DNA-directed RNA polymerase 1B [Cucumis melo var. makuwa] >TYK09045.1 DNA-direct... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SYG2 | 6.1e-10 | 53.42 | DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016740 |
transferase activity |
|
