HG10015426 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10015426
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr02: 26527471 .. 26529045 (+)
RNA-Seq ExpressionHG10015426
SyntenyHG10015426
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGACAGTCATGGCCATACTTTGCTGTGTTTCTCTCTTGATTCTTTTGACACCTTCTGCTTCCTCGCATGCTCTGGACCAGTCTTCTCCCTTGCAAGGTGTGTGTACTTGTCTTCTTCTTCTTCTTCTTAGTTTTCTTCTTCTTCTTTTCTCTCTCTGAGAATAATGGAGTTGTTTGTGATCTTGCAGCAACTGAAGCAGTGCATTCTCCTCGTCTTGTTTTGGGAAGGAAATTCAAAATGTTAGAAGAAGCAAGAGTGGATGAGAAGGTATGTTTAAGAGTGCTTTTAAAATAAGTCATTTCTATATAAATTACTGAGTAAACTATTCAAATACTTTAGTGAAGAAGTGTTTAATAATAAATCAAATTTGTTTTTGTTTTTGTTCTCTTAACAGTGGTTTTAATGTTTCCTTGACAATCATTCTTTCTCACAATGTTCTTCATTTCAAAAGCTTTTGTGTTTCACTTTTAAACACCGAGTCAAATTGAACCTGGTTTTGATCAAGTTATAAGTAGTTTTAGCCGAACTAAAAACATTCACAAACATAGTCATAATCCTGTTTGAAACGACTTTTTAAAAAACCCCTTTCAAACACTTGAAAAGTCATTCCAAACCATAACTAACTCATTTGGCCATTGTTATATCTGTCTTCTTTCTTTGCTGTTGATGTTGTGATTACTGATGAATTTCCTGGAAACAGGTTGAAGCTCATGGATTCCAAGTTGCCAAACAAAAAGATAACCACAAGGAAAATGTTTCAGGTGATTGCTACATTTTCTTTCAAAGAATGTCCATAAGTATGCAAGTTTCTTAAATAAGTCATCCCTATCATGTCTGCAATCTTGCCAGTTCTTTGACTAATAAATGCAACAAGATTGCTTCCTAGAAGATGGAAAATTTGAGGCATTGCCATATTTGAGTAACACCAAACTATTAAAGAAGAAAAAAGAAAAAAGAAACTAAGTACTTTCTTTTCTTTTTCACATTTTAGTTACATATCTGCACTTTCAGATAACTTCCCTGCCATTAAATTCATTCCATTTTAGCTACTGTCCACTTAAAATTAACTCACCATCAATTCCTTCCCTTAAATTAGTTGTTTAAATTAGTTGGGTTTTTACTCAAAGTTATGTCATTCAATCTCATTCATCAACCATGCATTTTCCCACTTTTTTAAGGTTAAACGTCCGAATTCACCAGTTCTAAATATTGAATAACTAAAAAAACAATGTAATTTTTAGTACAACAAATGTGGAGTTTCAGGATTTGAACATTTGACCTCGTCAAAGCAAGAGTACATGTAACTAATATTTAAGTCATGATGGTTAATATTTTATCTTTTTTAATAAATGCATTTGAGATATGAGTATTAGAAAAAGGAAATTAATGTAATTGCAACATTTACAGGTCAGCCTTATGGAAAGGAGGAAAATGAAATGTACTTAAACGAAGGAAAGGGGAGAAAGTGGGTGAATGTGGCCGACATGTCGTCACAGATTTTCACAATGGACTATGCTCACCTAAAACGTCGTCGTCCCGTTCATAACATGTCGCTCAAGCGTCCTTGA

mRNA sequence

ATGGGTTTGACAGTCATGGCCATACTTTGCTGTGTTTCTCTCTTGATTCTTTTGACACCTTCTGCTTCCTCGCATGCTCTGGACCAGTCTTCTCCCTTGCAAGCAACTGAAGCAGTGCATTCTCCTCGTCTTGTTTTGGGAAGGAAATTCAAAATGTTAGAAGAAGCAAGAGTGGATGAGAAGGTTGAAGCTCATGGATTCCAAGTTGCCAAACAAAAAGATAACCACAAGGAAAATGTTTCAGGTCAGCCTTATGGAAAGGAGGAAAATGAAATGTACTTAAACGAAGGAAAGGGGAGAAAGTGGGTGAATGTGGCCGACATGTCGTCACAGATTTTCACAATGGACTATGCTCACCTAAAACGTCGTCGTCCCGTTCATAACATGTCGCTCAAGCGTCCTTGA

Coding sequence (CDS)

ATGGGTTTGACAGTCATGGCCATACTTTGCTGTGTTTCTCTCTTGATTCTTTTGACACCTTCTGCTTCCTCGCATGCTCTGGACCAGTCTTCTCCCTTGCAAGCAACTGAAGCAGTGCATTCTCCTCGTCTTGTTTTGGGAAGGAAATTCAAAATGTTAGAAGAAGCAAGAGTGGATGAGAAGGTTGAAGCTCATGGATTCCAAGTTGCCAAACAAAAAGATAACCACAAGGAAAATGTTTCAGGTCAGCCTTATGGAAAGGAGGAAAATGAAATGTACTTAAACGAAGGAAAGGGGAGAAAGTGGGTGAATGTGGCCGACATGTCGTCACAGATTTTCACAATGGACTATGCTCACCTAAAACGTCGTCGTCCCGTTCATAACATGTCGCTCAAGCGTCCTTGA

Protein sequence

MGLTVMAILCCVSLLILLTPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEARVDEKVEAHGFQVAKQKDNHKENVSGQPYGKEENEMYLNEGKGRKWVNVADMSSQIFTMDYAHLKRRRPVHNMSLKRP
Homology
BLAST of HG10015426 vs. NCBI nr
Match: KAA0034486.1 (putative root meristem growth factor 8 [Cucumis melo var. makuwa] >TYK09040.1 putative root meristem growth factor 8 [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-48
Identity = 112/135 (82.96%), Postives = 119/135 (88.15%), Query Frame = 0

Query: 1   MGLTVMAILCCVSLLILLTPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEE-ARVD 60
           MGL VMAILCCVS+LILL PSASSHALDQSSPLQATEAVHSPRLVLGRKFKML+E AR+D
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLKEAARLD 60

Query: 61  EKVEAHGFQVAKQKDNHKENVSGQPYGKEENEMYLNEGKGRKWVNVADMSSQIFTMDYAH 120
           ++VE  GFQVAKQ DNHKENVSG+    EE  M LN+ KGRK VNVADMSSQIFTMDYAH
Sbjct: 61  KRVETQGFQVAKQNDNHKENVSGE----EEKGMKLNKRKGRKGVNVADMSSQIFTMDYAH 120

Query: 121 LKRRRPVHNMSLKRP 135
           LKRRRPVHNMSL RP
Sbjct: 121 LKRRRPVHNMSLNRP 131

BLAST of HG10015426 vs. NCBI nr
Match: KAE8648772.1 (hypothetical protein Csa_008620 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 3.6e-48
Identity = 112/130 (86.15%), Postives = 116/130 (89.23%), Query Frame = 0

Query: 6   MAILCCVSLLILLTPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEE-ARVDEKVEA 65
           MAILCCVS+L+LL PSASSHALDQSSPLQATE VHSP LVLGRKFKMLEE ARVD+KVEA
Sbjct: 1   MAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSP-LVLGRKFKMLEEAARVDKKVEA 60

Query: 66  HGFQVAKQKDNHKENVSGQPYGKEENEMYLNEGKGRKWVNVADMSSQIFTMDYAHLKRRR 125
            GFQVAKQKDNHKENVSGQ    EE    LN+GKGRKWV VADMSSQIFTMDYAHLKRRR
Sbjct: 61  QGFQVAKQKDNHKENVSGQ----EEQGTKLNKGKGRKWVKVADMSSQIFTMDYAHLKRRR 120

Query: 126 PVHNMSLKRP 135
           PVHNMSLKRP
Sbjct: 121 PVHNMSLKRP 125

BLAST of HG10015426 vs. NCBI nr
Match: XP_022977309.1 (uncharacterized protein LOC111477668 [Cucurbita maxima])

HSP 1 Score: 188.0 bits (476), Expect = 5.4e-44
Identity = 102/134 (76.12%), Postives = 111/134 (82.84%), Query Frame = 0

Query: 1   MGLTVMAILCCVSLLILLTPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEARVDE 60
           MGL  MA+LCCVSLLIL  P ASSHALDQSSPLQ TEAVHSPRLVL RKFKMLEEA+V  
Sbjct: 1   MGLIFMAMLCCVSLLILSVPFASSHALDQSSPLQETEAVHSPRLVLSRKFKMLEEAKV-- 60

Query: 61  KVEAHGFQVAKQKDNHKENVSGQPYGKEENEMYLNEGKGRKWVNVADMSSQIFTMDYAHL 120
            VEAHGFQ +KQ+D  KENVSGQPY +EE     N+GKGRKW NVADMSS+  TMDYAH+
Sbjct: 61  -VEAHGFQASKQEDEQKENVSGQPYKREE-----NKGKGRKWGNVADMSSRFLTMDYAHI 120

Query: 121 KRRRPVHNMSLKRP 135
           KRRRPVHNMS +RP
Sbjct: 121 KRRRPVHNMSRQRP 126

BLAST of HG10015426 vs. NCBI nr
Match: XP_022956442.1 (uncharacterized protein LOC111458171 [Cucurbita moschata] >KAG7032145.1 hypothetical protein SDJN02_06188 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.6 bits (475), Expect = 7.1e-44
Identity = 102/134 (76.12%), Postives = 112/134 (83.58%), Query Frame = 0

Query: 1   MGLTVMAILCCVSLLILLTPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEARVDE 60
           MGL +MA+LCCVSLLIL  P ASSHALDQSSPLQATEAVHSPRLVL RKFKMLEEA+V  
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKV-- 60

Query: 61  KVEAHGFQVAKQKDNHKENVSGQPYGKEENEMYLNEGKGRKWVNVADMSSQIFTMDYAHL 120
            VEAHGFQ +KQ+D  KE VSGQ Y +EE     N+GKGRKW NVADMSS+ FTMDYAH+
Sbjct: 61  -VEAHGFQASKQEDEQKETVSGQAYKREE-----NKGKGRKWGNVADMSSRFFTMDYAHI 120

Query: 121 KRRRPVHNMSLKRP 135
           KRRRPVHNMS +RP
Sbjct: 121 KRRRPVHNMSRQRP 126

BLAST of HG10015426 vs. NCBI nr
Match: XP_023525366.1 (uncharacterized protein LOC111788986 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-41
Identity = 101/135 (74.81%), Postives = 111/135 (82.22%), Query Frame = 0

Query: 1   MGLTVMAILCCVSLLILLTPSASSHALDQSSPLQATE-AVHSPRLVLGRKFKMLEEARVD 60
           MGL +MA+LCCVSLLIL  P ASSHALDQSSPLQ TE AVHSPRLVL RKFKMLEEA+V 
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKV- 60

Query: 61  EKVEAHGFQVAKQKDNHKENVSGQPYGKEENEMYLNEGKGRKWVNVADMSSQIFTMDYAH 120
             VEAHGFQ +KQ+D  KENVSGQ Y +EE     N+GKGRKW NV DMSS+ FTMDYAH
Sbjct: 61  --VEAHGFQASKQEDELKENVSGQAYKREE-----NKGKGRKWGNVDDMSSRFFTMDYAH 120

Query: 121 LKRRRPVHNMSLKRP 135
           +KRRRPVHNMS +RP
Sbjct: 121 IKRRRPVHNMSRQRP 127

BLAST of HG10015426 vs. ExPASy TrEMBL
Match: A0A0A0KWA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606860 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.5e-50
Identity = 116/135 (85.93%), Postives = 120/135 (88.89%), Query Frame = 0

Query: 1   MGLTVMAILCCVSLLILLTPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEE-ARVD 60
           MGL VMAILCCVS+L+LL PSASSHALDQSSPLQATE VHSP LVLGRKFKMLEE ARVD
Sbjct: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSP-LVLGRKFKMLEEAARVD 60

Query: 61  EKVEAHGFQVAKQKDNHKENVSGQPYGKEENEMYLNEGKGRKWVNVADMSSQIFTMDYAH 120
           +KVEA GFQVAKQKDNHKENVSGQ    EE    LN+GKGRKWV VADMSSQIFTMDYAH
Sbjct: 61  KKVEAQGFQVAKQKDNHKENVSGQ----EEQGTKLNKGKGRKWVKVADMSSQIFTMDYAH 120

Query: 121 LKRRRPVHNMSLKRP 135
           LKRRRPVHNMSLKRP
Sbjct: 121 LKRRRPVHNMSLKRP 130

BLAST of HG10015426 vs. ExPASy TrEMBL
Match: A0A5D3CCI7 (Putative root meristem growth factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00260 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.0e-48
Identity = 112/135 (82.96%), Postives = 119/135 (88.15%), Query Frame = 0

Query: 1   MGLTVMAILCCVSLLILLTPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEE-ARVD 60
           MGL VMAILCCVS+LILL PSASSHALDQSSPLQATEAVHSPRLVLGRKFKML+E AR+D
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLKEAARLD 60

Query: 61  EKVEAHGFQVAKQKDNHKENVSGQPYGKEENEMYLNEGKGRKWVNVADMSSQIFTMDYAH 120
           ++VE  GFQVAKQ DNHKENVSG+    EE  M LN+ KGRK VNVADMSSQIFTMDYAH
Sbjct: 61  KRVETQGFQVAKQNDNHKENVSGE----EEKGMKLNKRKGRKGVNVADMSSQIFTMDYAH 120

Query: 121 LKRRRPVHNMSLKRP 135
           LKRRRPVHNMSL RP
Sbjct: 121 LKRRRPVHNMSLNRP 131

BLAST of HG10015426 vs. ExPASy TrEMBL
Match: A0A6J1IR14 (uncharacterized protein LOC111477668 OS=Cucurbita maxima OX=3661 GN=LOC111477668 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.6e-44
Identity = 102/134 (76.12%), Postives = 111/134 (82.84%), Query Frame = 0

Query: 1   MGLTVMAILCCVSLLILLTPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEARVDE 60
           MGL  MA+LCCVSLLIL  P ASSHALDQSSPLQ TEAVHSPRLVL RKFKMLEEA+V  
Sbjct: 1   MGLIFMAMLCCVSLLILSVPFASSHALDQSSPLQETEAVHSPRLVLSRKFKMLEEAKV-- 60

Query: 61  KVEAHGFQVAKQKDNHKENVSGQPYGKEENEMYLNEGKGRKWVNVADMSSQIFTMDYAHL 120
            VEAHGFQ +KQ+D  KENVSGQPY +EE     N+GKGRKW NVADMSS+  TMDYAH+
Sbjct: 61  -VEAHGFQASKQEDEQKENVSGQPYKREE-----NKGKGRKWGNVADMSSRFLTMDYAHI 120

Query: 121 KRRRPVHNMSLKRP 135
           KRRRPVHNMS +RP
Sbjct: 121 KRRRPVHNMSRQRP 126

BLAST of HG10015426 vs. ExPASy TrEMBL
Match: A0A6J1GWC1 (uncharacterized protein LOC111458171 OS=Cucurbita moschata OX=3662 GN=LOC111458171 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.4e-44
Identity = 102/134 (76.12%), Postives = 112/134 (83.58%), Query Frame = 0

Query: 1   MGLTVMAILCCVSLLILLTPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEARVDE 60
           MGL +MA+LCCVSLLIL  P ASSHALDQSSPLQATEAVHSPRLVL RKFKMLEEA+V  
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKV-- 60

Query: 61  KVEAHGFQVAKQKDNHKENVSGQPYGKEENEMYLNEGKGRKWVNVADMSSQIFTMDYAHL 120
            VEAHGFQ +KQ+D  KE VSGQ Y +EE     N+GKGRKW NVADMSS+ FTMDYAH+
Sbjct: 61  -VEAHGFQASKQEDEQKETVSGQAYKREE-----NKGKGRKWGNVADMSSRFFTMDYAHI 120

Query: 121 KRRRPVHNMSLKRP 135
           KRRRPVHNMS +RP
Sbjct: 121 KRRRPVHNMSRQRP 126

BLAST of HG10015426 vs. ExPASy TrEMBL
Match: A0A6J1D6T9 (uncharacterized protein LOC111017571 OS=Momordica charantia OX=3673 GN=LOC111017571 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.4e-32
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 0

Query: 1   MGLTVMAILCCVSLLILLTPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLEEARVDE 60
           MGL VMA LCCVSLLILL P ASSHAL+QS  LQATEAV   R    RKF+++EEA    
Sbjct: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQATEAV---RFRPTRKFRLMEEAGA-- 60

Query: 61  KVEAHGFQVAKQKDNHKENVSGQPYGKEENEMYLNEGKGRKWVNVADMSSQIFTMDYAHL 120
            V+AHG  V  Q DNH++NVSGQPY +E+  M L+  KGRKW++V DMSS+ FTMDY H 
Sbjct: 61  -VKAHGSPVPIQNDNHEDNVSGQPYKREQKGMNLSRRKGRKWLDVDDMSSRFFTMDYVHT 120

Query: 121 KRRRPVHNMSLKRP 135
           +RRRPVHNMS +RP
Sbjct: 121 RRRRPVHNMSRQRP 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0034486.12.1e-4882.96putative root meristem growth factor 8 [Cucumis melo var. makuwa] >TYK09040.1 pu... [more]
KAE8648772.13.6e-4886.15hypothetical protein Csa_008620 [Cucumis sativus][more]
XP_022977309.15.4e-4476.12uncharacterized protein LOC111477668 [Cucurbita maxima][more]
XP_022956442.17.1e-4476.12uncharacterized protein LOC111458171 [Cucurbita moschata] >KAG7032145.1 hypothet... [more]
XP_023525366.11.1e-4174.81uncharacterized protein LOC111788986 isoform X1 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWA12.5e-5085.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606860 PE=4 SV=1[more]
A0A5D3CCI71.0e-4882.96Putative root meristem growth factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6J1IR142.6e-4476.12uncharacterized protein LOC111477668 OS=Cucurbita maxima OX=3661 GN=LOC111477668... [more]
A0A6J1GWC13.4e-4476.12uncharacterized protein LOC111458171 OS=Cucurbita moschata OX=3662 GN=LOC1114581... [more]
A0A6J1D6T91.4e-3263.43uncharacterized protein LOC111017571 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10015426.1HG10015426.1mRNA