HG10015419 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015419
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr02: 26492386 .. 26492700 (-)
RNA-Seq Expression	HG10015419
Synteny	HG10015419

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACTGACATATGGACACGTGTCTCAACAACCACGGCAGCGACGACGACGACCGGTCTATTTAAACCCCCTCTCTGTTATTGCCCCAAAATCACAGAGAACAGAGAGATTGAAATGAGCGGCGAAGGGGAGAACGGAGGGTCGAAGGCAGCGAAGATCGTGGGGGCGGTGGTGGGGTTTGCCACTTTCATTGGGTGTGTGGCGAGCATGTTGTCGGCGGACTCTGAAACCACCGGGGATCGGAAAATGATGAAGGCTCCGGGAAAACAGGGGGATCCTTCTAAGTACTTCAAAGATCTGCGCAAGAAATGA

mRNA sequence

ATGACCACTGACATATGGACACGTGTCTCAACAACCACGGCAGCGACGACGACGACCGGTCTATTTAAACCCCCTCTCTGTTATTGCCCCAAAATCACAGAGAACAGAGAGATTGAAATGAGCGGCGAAGGGGAGAACGGAGGGTCGAAGGCAGCGAAGATCGTGGGGGCGGTGGTGGGGTTTGCCACTTTCATTGGGTGTGTGGCGAGCATGTTGTCGGCGGACTCTGAAACCACCGGGGATCGGAAAATGATGAAGGCTCCGGGAAAACAGGGGGATCCTTCTAAGTACTTCAAAGATCTGCGCAAGAAATGA

Coding sequence (CDS)

ATGACCACTGACATATGGACACGTGTCTCAACAACCACGGCAGCGACGACGACGACCGGTCTATTTAAACCCCCTCTCTGTTATTGCCCCAAAATCACAGAGAACAGAGAGATTGAAATGAGCGGCGAAGGGGAGAACGGAGGGTCGAAGGCAGCGAAGATCGTGGGGGCGGTGGTGGGGTTTGCCACTTTCATTGGGTGTGTGGCGAGCATGTTGTCGGCGGACTCTGAAACCACCGGGGATCGGAAAATGATGAAGGCTCCGGGAAAACAGGGGGATCCTTCTAAGTACTTCAAAGATCTGCGCAAGAAATGA

Protein sequence

MTTDIWTRVSTTTAATTTTGLFKPPLCYCPKITENREIEMSGEGENGGSKAAKIVGAVVGFATFIGCVASMLSADSETTGDRKMMKAPGKQGDPSKYFKDLRKK

Homology

[Close]

BLAST of HG10015419 vs. NCBI nr
Match: KAA0034481.1 (hypothetical protein E6C27_scaffold65G004930 [Cucumis melo var. makuwa] >TYK09035.1 hypothetical protein E5676_scaffold475G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 60/76 (78.95%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 40  MSGEGENGGSKAAKIVGAVVGFATFIGCVASML-SADSETTGDRKMMKAPGKQG------ 99
           MSGE +NGGSKAAKIVGAVVGFATFIGCVASML SADSET GDRKMMKAPGK G      
Sbjct: 1   MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60

Query: 100 ----DPSKYFKDLRKK 105
               DPSKYF+DLRKK
Sbjct: 61  EFEKDPSKYFRDLRKK 76

[Close]

BLAST of HG10015419 vs. NCBI nr
Match: KAG6574034.1 (hypothetical protein SDJN03_27921, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 4.1e-15
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 40  MSGEGENGGSKAAKIVGAVVGFATFIGCVASMLSADSETTGDRKMMKAPGKQG------- 99
           MSGE E+GGSKAAKIVGAVVGFATFIGCVAS+LSA +E  GD KMMKAPG++G       
Sbjct: 1   MSGEPESGGSKAAKIVGAVVGFATFIGCVASVLSAGAEAMGDPKMMKAPGRRGQMIERGK 60

Query: 100 ---DPSKYFKDLRKK 105
              +PS YF+DLR K
Sbjct: 61  FEENPSGYFRDLRNK 75

[Close]

BLAST of HG10015419 vs. ExPASy TrEMBL
Match: A0A5A7SYF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00210 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19
Identity = 60/76 (78.95%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 40  MSGEGENGGSKAAKIVGAVVGFATFIGCVASML-SADSETTGDRKMMKAPGKQG------ 99
           MSGE +NGGSKAAKIVGAVVGFATFIGCVASML SADSET GDRKMMKAPGK G      
Sbjct: 1   MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60

Query: 100 ----DPSKYFKDLRKK 105
               DPSKYF+DLRKK
Sbjct: 61  EFEKDPSKYFRDLRKK 76

[Close]

BLAST of HG10015419 vs. ExPASy TrEMBL
Match: A0A0A0KW91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606810 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 57/75 (76.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 40  MSGEGENGGSKAAKIVGAVVGFATFIGCVASMLSADSETTGDRKMMKAPGKQG------- 99
           MSGE +NGGSKAAKIVGAVVGFATFIGCVASM SADSET GDR+ MKAPGK G       
Sbjct: 1   MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMFSADSETAGDRRTMKAPGKHGEEMYRDE 60

Query: 100 ---DPSKYFKDLRKK 105
              DPSKYF+DLRKK
Sbjct: 61  FEKDPSKYFRDLRKK 75

The following BLAST results are available for this feature:

BLAST of HG10015419 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034481.1	2.8e-19	78.95	hypothetical protein E6C27_scaffold65G004930 [Cucumis melo var. makuwa] >TYK0903...	[more]
KAG6574034.1	4.1e-15	68.00	hypothetical protein SDJN03_27921, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10015419 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10015419 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYF6	1.3e-19	78.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KW91	1.7e-19	76.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606810 PE=4 SV=1	[more]

BLAST of HG10015419 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015419.1	HG10015419.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane