HG10015296 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015296
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr02: 25566094 .. 25566955 (-)
RNA-Seq Expression	HG10015296
Synteny	HG10015296

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCTACCAATCCCACCAAATGTACAGTCTATTCCAGTGGAAATCAAGCGCCAGACTTTCCATACCCATCAAAGTCAGCTGCTTCACTTGCTGACCGACTCTACTGATTTGTCCAAGCTCAAGCAAATACATGCTCAAGTACTTCGTAGCTTCTCGACCCATTAATTCTCTCTCTTCCTCTTTAGCTGAATTCTCCACGTTTCGTCATTAACTGATTTTGGTTGTGTCTGCCGTGTTTTTTATCAAATCGATAACCCCAATTCGTTCATGTGGAACAATCTGATCGGAGCCTGTGCACGGAGGTTGGACCGGAAAGAGCAGGCGATCGAGCTCTTTAACAAAATGTTAGAAGAAGGCTTAGTTGAACCAGATAAACATACTTTCCCTTTTCTTCTTAAAGCTTGTGCTTACGTATTCGCTTTATCTGAAGGGAGACAGGCGCATACTCATATTGTTAAACTTGGGTTAGAATGGATGTTCATGTTATGCTTCTTGTGGATGTTTGAGTCTAGCATTGAAGGTGTTCGAGAAAATGCCTCACAGACGTTTGGTTTCGTTGAATGTGATGATTGATGCATATGCTCAATGTGGGCTTTTTGAAAATGATCTCAAGCTATTTGATGAAATGCAGAACAGTTTTGAGCCCGACGGGTATACAATGTAGAGTATAATTAGTGCTTGTGCTGGTATCGGAGCTTTTTCTCTGGGGACGTGGGCTCATGCTCATGCATTGAAGAAGGCCAGTGTGGTGGGTGATGTCCTGATCAACTCCTCACTGGTGGATATGTACAACAAGCGTGGTTCTTTGAGAATGGCTCAGCAGGTCTTTGAGACAATGCCCAAACATGACCGGAATTGA

mRNA sequence

ATGCTTCTACCAATCCCACCAAATGTACAGTCTATTCCAGTGGAAATCAAGCGCCAGACTTTCCATACCCATCAAAGTCAGCTGCTTCACTTGCTGACCGACTCTACTGATTTGTCCAAGCTCAAGCAAATACATGCTCAAAGTATAATTAGTGCTTGTGCTGGTATCGGAGCTTTTTCTCTGGGGACGTGGGCTCATGCTCATGCATTGAAGAAGGCCAGTGTGGTGGGTGATGTCCTGATCAACTCCTCACTGGTGGATATGTACAACAAGCGTGGTTCTTTGAGAATGGCTCAGCAGGTCTTTGAGACAATGCCCAAACATGACCGGAATTGA

Coding sequence (CDS)

ATGCTTCTACCAATCCCACCAAATGTACAGTCTATTCCAGTGGAAATCAAGCGCCAGACTTTCCATACCCATCAAAGTCAGCTGCTTCACTTGCTGACCGACTCTACTGATTTGTCCAAGCTCAAGCAAATACATGCTCAAAGTATAATTAGTGCTTGTGCTGGTATCGGAGCTTTTTCTCTGGGGACGTGGGCTCATGCTCATGCATTGAAGAAGGCCAGTGTGGTGGGTGATGTCCTGATCAACTCCTCACTGGTGGATATGTACAACAAGCGTGGTTCTTTGAGAATGGCTCAGCAGGTCTTTGAGACAATGCCCAAACATGACCGGAATTGA

Protein sequence

MLLPIPPNVQSIPVEIKRQTFHTHQSQLLHLLTDSTDLSKLKQIHAQSIISACAGIGAFSLGTWAHAHALKKASVVGDVLINSSLVDMYNKRGSLRMAQQVFETMPKHDRN

Homology

[Close]

BLAST of HG10015296 vs. NCBI nr
Match: XP_004135466.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-19
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 47  QSIISACAGIGAFSLGTWAHAHALKKAS--VVGDVLINSSLVDMYNKRGSLRMAQQVFET 106
           QSI+SACAGIGA SLG WAHA+ L+KAS  + GDVLINSSLVDMY+K GSLRMAQQVFET
Sbjct: 230 QSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFET 289

Query: 107 MPKHDRN 112
           MPKHD N
Sbjct: 290 MPKHDLN 296

[Close]

BLAST of HG10015296 vs. NCBI nr
Match: XP_004135466.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-08
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1  MLLPIPPNVQSIPVEIKRQTFHTHQSQLLHLLTDSTDLSKLKQIHAQSI 50
          MLL IP N QS+P+EIK +   THQS+ LHLLTD TDLSKLKQIHAQ+I
Sbjct: 1  MLLAIPTNSQSLPIEIKGENSKTHQSRFLHLLTDCTDLSKLKQIHAQAI 49

HSP 2 Score: 105.1 bits (261), Expect = 3.8e-19
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 47  QSIISACAGIGAFSLGTWAHAHALKKA--SVVGDVLINSSLVDMYNKRGSLRMAQQVFET 106
           QSIISACAGIGA SLG WAHA+ L+KA  ++ GDVLINSSLVDMY+K GSLRMAQQVFET
Sbjct: 140 QSIISACAGIGALSLGMWAHAYVLRKAGGAMAGDVLINSSLVDMYSKCGSLRMAQQVFET 199

Query: 107 MPKHDRN 112
           MPKHD N
Sbjct: 200 MPKHDLN 206

[Close]

BLAST of HG10015296 vs. NCBI nr
Match: XP_008446291.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 6.6e-19
Identity = 92/296 (31.08%), Postives = 101/296 (34.12%), Query Frame = 0


Query: 1   MLLPIPPNVQSIPVEIKRQTFHTHQSQLLHLLTDSTDLSKLKQIHA-------------- 60
           MLL IPPN QS P+EIKR+TF+THQS+LLHLLTD TDLSKLKQIHA              
Sbjct: 7   MLLAIPPNSQSFPIEIKRETFNTHQSRLLHLLTDCTDLSKLKQIHAQAIRNFSTHKSSLF 66

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 67  LYSRILHVSSLIDFDYACRVFNQIGNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEG 126

[Close]

BLAST of HG10015296 vs. NCBI nr
Match: XP_022151200.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 5.6e-18
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 29  LHLLTDSTDLSKLKQIHAQSIISACAGIGAFSLGTWAHAHALKKA--SVVGDVLINSSLV 88
           L L  +  D+ +      QS+ISACAGIGA SLG WAHA+ L+KA  ++  DVLINSSLV
Sbjct: 212 LKLFVEMQDVFEPDGYTMQSVISACAGIGALSLGMWAHAYVLRKAGGAMSADVLINSSLV 271

Query: 89  DMYNKRGSLRMAQQVFETMPKHDRN 112
           DMY+K GSLRMAQ+VFETMPKHD N
Sbjct: 272 DMYSKCGSLRMAQEVFETMPKHDLN 296

[Close]

BLAST of HG10015296 vs. NCBI nr
Match: XP_022957211.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Cucurbita moschata])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 47  QSIISACAGIGAFSLGTWAHAHALKK--ASVVGDVLINSSLVDMYNKRGSLRMAQQVFET 106
           QSIISACAGIGA SLG W+HA+ L+K   ++VG+VLINSSLVDMY+K GSL MAQQVFET
Sbjct: 230 QSIISACAGIGALSLGMWSHAYVLRKTGGAMVGEVLINSSLVDMYSKCGSLSMAQQVFET 289

Query: 107 MPKHDRN 112
           MPKHD N
Sbjct: 290 MPKHDLN 296

[Close]

BLAST of HG10015296 vs. ExPASy Swiss-Prot
Match: Q0WQW5 (Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H51 PE=1 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-14
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 47  QSIISACAGIGAFSLGTWAHAHALKK--ASVVGDVLINSSLVDMYNKRGSLRMAQQVFET 106
           QS++SACAG+G+ SLGTWAHA  L+K    V  DVL+ +SL++MY K GSLRMA+QVF+ 
Sbjct: 255 QSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQG 314

Query: 107 MPKHD 110
           M K D
Sbjct: 315 MQKRD 319

[Close]

BLAST of HG10015296 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-07
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 40  KLKQIHAQSIISACAGIGAFSLGTWAHAHALKKASVVGDVLINSSLVDMYNKRGSLRMAQ 99
           KL QI   S +SACA +GA  LG W H++ +KK  +  +  + S+L+ MY+K G L  ++
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSY-IKKHGIRMNFHVTSALIHMYSKCGDLEKSR 421

Query: 100 QVFETMPKHD 110
           +VF ++ K D
Sbjct: 422 EVFNSVEKRD 430

[Close]

BLAST of HG10015296 vs. ExPASy Swiss-Prot
Match: Q0WSH6 (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana OX=3702 GN=LOI1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-07
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 22  HTHQSQLLHLLTDSTDLSKLKQIHAQSIISACAGIGAFSLGTWAHAHALKKASVVGDVLI 81
           H  +   +  L    D+ +       S++SACAG+    LG   HAHA+ KA V   + +
Sbjct: 289 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAV-KACVERTIFV 348

Query: 82  NSSLVDMYNKRGSLRMAQQVFETMPK 108
            S+LVDMY K G +  ++Q F+ MP+
Sbjct: 349 GSALVDMYGKCGCIEDSEQAFDEMPE 373

[Close]

BLAST of HG10015296 vs. ExPASy Swiss-Prot
Match: Q9LXE8 (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H91 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 48  SIISACAGIGAFSLGTWAHAHALKKASVVG------DVLINSSLVDMYNKRGSLRMAQQV 107
           S++SACA  G   +G W H +ALKK  ++G      DV++ ++LVDMY K G++  +  V
Sbjct: 249 SMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNV 308

Query: 108 FETMPKHD 110
           F  M K +
Sbjct: 309 FRLMRKRN 316

[Close]

BLAST of HG10015296 vs. ExPASy Swiss-Prot
Match: Q56X05 (Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX=3702 GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 43  QIHAQSIISACAGIGAFSLGTWAHAHALKKASVVGDVLINSSLVDMYNKRGSLRMAQQVF 102
           ++   ++ISACA +G   +G   H + L+   V+ DV I S+LVDMY+K GSL  A  VF
Sbjct: 287 EVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVL-DVYIGSALVDMYSKCGSLERALLVF 346

Query: 103 ETMPK 108
             +PK
Sbjct: 347 FNLPK 350

[Close]

BLAST of HG10015296 vs. ExPASy TrEMBL
Match: A0A0A0KTV7 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604120 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 47  QSIISACAGIGAFSLGTWAHAHALKKAS--VVGDVLINSSLVDMYNKRGSLRMAQQVFET 106
           QSI+SACAGIGA SLG WAHA+ L+KAS  + GDVLINSSLVDMY+K GSLRMAQQVFET
Sbjct: 230 QSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFET 289

Query: 107 MPKHDRN 112
           MPKHD N
Sbjct: 290 MPKHDLN 296

[Close]

BLAST of HG10015296 vs. ExPASy TrEMBL
Match: A0A0A0KTV7 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604120 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.1e-09
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1  MLLPIPPNVQSIPVEIKRQTFHTHQSQLLHLLTDSTDLSKLKQIHAQSI 50
          MLL IP N QS+P+EIK +   THQS+ LHLLTD TDLSKLKQIHAQ+I
Sbjct: 1  MLLAIPTNSQSLPIEIKGENSKTHQSRFLHLLTDCTDLSKLKQIHAQAI 49

HSP 2 Score: 105.1 bits (261), Expect = 1.9e-19
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 47  QSIISACAGIGAFSLGTWAHAHALKKA--SVVGDVLINSSLVDMYNKRGSLRMAQQVFET 106
           QSIISACAGIGA SLG WAHA+ L+KA  ++ GDVLINSSLVDMY+K GSLRMAQQVFET
Sbjct: 140 QSIISACAGIGALSLGMWAHAYVLRKAGGAMAGDVLINSSLVDMYSKCGSLRMAQQVFET 199

Query: 107 MPKHDRN 112
           MPKHD N
Sbjct: 200 MPKHDLN 206

[Close]

BLAST of HG10015296 vs. ExPASy TrEMBL
Match: A0A1S3BE78 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103489069 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.2e-19
Identity = 92/296 (31.08%), Postives = 101/296 (34.12%), Query Frame = 0


Query: 1   MLLPIPPNVQSIPVEIKRQTFHTHQSQLLHLLTDSTDLSKLKQIHA-------------- 60
           MLL IPPN QS P+EIKR+TF+THQS+LLHLLTD TDLSKLKQIHA              
Sbjct: 7   MLLAIPPNSQSFPIEIKRETFNTHQSRLLHLLTDCTDLSKLKQIHAQAIRNFSTHKSSLF 66

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 67  LYSRILHVSSLIDFDYACRVFNQIGNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEG 126

[Close]

BLAST of HG10015296 vs. ExPASy TrEMBL
Match: A0A6J1DAJ2 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111019179 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.7e-18
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 29  LHLLTDSTDLSKLKQIHAQSIISACAGIGAFSLGTWAHAHALKKA--SVVGDVLINSSLV 88
           L L  +  D+ +      QS+ISACAGIGA SLG WAHA+ L+KA  ++  DVLINSSLV
Sbjct: 212 LKLFVEMQDVFEPDGYTMQSVISACAGIGALSLGMWAHAYVLRKAGGAMSADVLINSSLV 271

Query: 89  DMYNKRGSLRMAQQVFETMPKHDRN 112
           DMY+K GSLRMAQ+VFETMPKHD N
Sbjct: 272 DMYSKCGSLRMAQEVFETMPKHDLN 296

[Close]

BLAST of HG10015296 vs. ExPASy TrEMBL
Match: A0A6J1GYL5 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111458669 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.0e-18
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 47  QSIISACAGIGAFSLGTWAHAHALKK--ASVVGDVLINSSLVDMYNKRGSLRMAQQVFET 106
           QSIISACAGIGA SLG W+HA+ L+K   ++VG+VLINSSLVDMY+K GSL MAQQVFET
Sbjct: 230 QSIISACAGIGALSLGMWSHAYVLRKTGGAMVGEVLINSSLVDMYSKCGSLSMAQQVFET 289

Query: 107 MPKHDRN 112
           MPKHD N
Sbjct: 290 MPKHDLN 296

[Close]

BLAST of HG10015296 vs. TAIR 10
Match: AT1G59720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-15
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 47  QSIISACAGIGAFSLGTWAHAHALKK--ASVVGDVLINSSLVDMYNKRGSLRMAQQVFET 106
           QS++SACAG+G+ SLGTWAHA  L+K    V  DVL+ +SL++MY K GSLRMA+QVF+ 
Sbjct: 255 QSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQG 314

Query: 107 MPKHD 110
           M K D
Sbjct: 315 MQKRD 319

[Close]

BLAST of HG10015296 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 40  KLKQIHAQSIISACAGIGAFSLGTWAHAHALKKASVVGDVLINSSLVDMYNKRGSLRMAQ 99
           KL QI   S +SACA +GA  LG W H++ +KK  +  +  + S+L+ MY+K G L  ++
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSY-IKKHGIRMNFHVTSALIHMYSKCGDLEKSR 421

Query: 100 QVFETMPKHD 110
           +VF ++ K D
Sbjct: 422 EVFNSVEKRD 430

[Close]

BLAST of HG10015296 vs. TAIR 10
Match: AT4G14850.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 22  HTHQSQLLHLLTDSTDLSKLKQIHAQSIISACAGIGAFSLGTWAHAHALKKASVVGDVLI 81
           H  +   +  L    D+ +       S++SACAG+    LG   HAHA+ KA V   + +
Sbjct: 289 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAV-KACVERTIFV 348

Query: 82  NSSLVDMYNKRGSLRMAQQVFETMPK 108
            S+LVDMY K G +  ++Q F+ MP+
Sbjct: 349 GSALVDMYGKCGCIEDSEQAFDEMPE 373

[Close]

BLAST of HG10015296 vs. TAIR 10
Match: AT1G06150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 43   QIHAQSIISACAGIGAFSLGTWAHAHALKKASVVGDVLINSSLVDMYNKRGSLRMAQQVF 102
            ++   ++ISACA +G   +G   H + L+   V+ DV I S+LVDMY+K GSL  A  VF
Sbjct: 1032 EVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVL-DVYIGSALVDMYSKCGSLERALLVF 1091

Query: 103  ETMPK 108
              +PK
Sbjct: 1092 FNLPK 1095

[Close]

BLAST of HG10015296 vs. TAIR 10
Match: AT5G15340.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 48  SIISACAGIGAFSLGTWAHAHALKKASVVG------DVLINSSLVDMYNKRGSLRMAQQV 107
           S++SACA  G   +G W H +ALKK  ++G      DV++ ++LVDMY K G++  +  V
Sbjct: 249 SMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNV 308

Query: 108 FETMPKHD 110
           F  M K +
Sbjct: 309 FRLMRKRN 316

The following BLAST results are available for this feature:

BLAST of HG10015296 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135466.1	2.3e-19	80.60	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
XP_004135466.1	1.0e-08	71.43	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
XP_008446291.1	6.6e-19	31.08	PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/...	[more]
XP_022151200.1	5.6e-18	63.53	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
XP_022957211.1	1.2e-17	76.12	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]

Pages

BLAST of HG10015296 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WQW5	3.9e-14	60.00	Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
O82380	2.1e-07	40.00	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
Q0WSH6	2.1e-07	34.88	Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana OX...	[more]
Q9LXE8	2.3e-06	39.71	Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidop...	[more]
Q56X05	2.3e-06	43.08	Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX...	[more]

BLAST of HG10015296 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTV7	1.1e-19	80.60	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G6041...	[more]
A0A0A0KTV7	5.1e-09	71.43	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G6041...	[more]
A0A1S3BE78	3.2e-19	31.08	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
A0A6J1DAJ2	2.7e-18	63.53	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
A0A6J1GYL5	6.0e-18	76.12	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]

Pages

BLAST of HG10015296 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G59720.1	2.7e-15	60.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G29760.1	1.5e-08	40.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G14850.1	1.5e-08	34.88	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G06150.1	1.6e-07	43.08	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G15340.1	1.6e-07	39.71	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 14..110 e-value: 1.4E-5 score: 26.4
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 47..110
None	No IPR available	PANTHER	PTHR47925:SF96	BNAC04G18690D PROTEIN	coord: 47..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015296.1	HG10015296.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding