HG10015285 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015285
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	CLAVATA3/ESR (CLE)-related protein 25-like
Location	Chr02: 25467379 .. 25468789 (-)
RNA-Seq Expression	HG10015285
Synteny	HG10015285

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGTGGAGATCATAGTTGTTGCTACTTTTCTTACTTGAAGGTCTTGCTTGGAGCTGTGGTTGTGGGGTTGTTTGTATGGCTTTTAATCATTGGGTCGCCGACACCGGGGAGAACAACAAGCTGGCCGGAAGCTGAGTCTGAGGTTGAGGGAAGCCATGTCATGAAGCCAGCTAAGGAATTGGCCAACAACAACCATCCAAAGTTGGATCCTAACTTTATGAGCAAAATTAGAGTTCCTAAAGGACCAGACCCCATTCATAACAGGTATATAAAATATATAAATAAGCTTTACAGATTTAGGGAAATTTTTAAAAATAAAAAAATTAGGGAAACTATTTACACAAAATAACAAAATTTTTATATAATTGCGATAGACGCTCATAGAAGTCTATCAAAGTCTATCAGTGATAGAAATGATAGAAGTCTATTACTAATAGATGCTAATAATGATAGAAGTCTATTACTAATAGATGCTAATAGAAGTCTATCAATATCTATTAGTGTTTTTTATTTTTGTTATTTTCTGTAAATAGTTTGACATTTTTTCTATTTGTGAAATTTTCCCTAAGATTTATTAAATTTATTATAATCTATACTAAATTTAGCATGAATATTTTTACAAAAAAAATATATATATATCAATATCAATAATTTAAATTCTTGTAATGTGATTTTTATATCTCACTTAGTATTAATAAGGTTAAAATGTTATTTTGTATCTATACTTTGAAGTTTGTTCAAGTTTAATCATGTACTTTCAATAACTCTTAAATTTAGTCTCGATTGTTAGTTCATTGTCGATTTTTTTATAAAAAAATTTGTTAATTATTTGATTTTTTACTATAAATTTTGAAGACATATTCACATATTGTATTATTATTATTATTATTATTATTATTATTATTATTTAACCAATTTTAGTAAAAATGAATTTTGAGAGACTAAATTAAAGATTTATTAAAAATACAAGGACTAAAGTTGAACAAACTTTAGAGTATAGGAACAAAAGTAATATTTTAACCTATTAATAATTACGTGTTAGACTTTGGGTTAAATTTTGAAGTTTACAAATAAATGAAAATGTTAGAATTTTTTAAATATATATTTTAATGGTCTTAGTGTGTATGACATATATGCTCTAGAAGCTATACTTTAAACAAATAAAAAAACATTTTTTTCAAAATTATTTAACAATATATAGCTCATGGGCTTTAATTAAATTCATGCATGCAAGTATGGTTGAAAATTTTGTATTGAAGGTAGAGATAAAAATTAAAATTTATATTGAATTTATGTGTTATAATAAAATAAATATTTTATTTTGGGAGTGAGTTTTTGTTGAATATGTATGTACTTGGATTGGCAGGAGAATTGGGGTTAAAGGAGGGCCTCCCAGAGGAGCTTAG

mRNA sequence

ATGAGAAGTGGAGATCATAGTTGTTGCTACTTTTCTTACTTGAAGGTCTTGCTTGGAGCTGTGGTTGTGGGGTTGTTTGTATGGCTTTTAATCATTGGGTCGCCGACACCGGGGAGAACAACAAGCTGGCCGGAAGCTGAGTCTGAGGTTGAGGGAAGCCATGTCATGAAGCCAGCTAAGGAATTGGCCAACAACAACCATCCAAAGTTGGATCCTAACTTTATGAGCAAAATTAGAGTTCCTAAAGGACCAGACCCCATTCATAACAGGAGAATTGGGGTTAAAGGAGGGCCTCCCAGAGGAGCTTAG

Coding sequence (CDS)

ATGAGAAGTGGAGATCATAGTTGTTGCTACTTTTCTTACTTGAAGGTCTTGCTTGGAGCTGTGGTTGTGGGGTTGTTTGTATGGCTTTTAATCATTGGGTCGCCGACACCGGGGAGAACAACAAGCTGGCCGGAAGCTGAGTCTGAGGTTGAGGGAAGCCATGTCATGAAGCCAGCTAAGGAATTGGCCAACAACAACCATCCAAAGTTGGATCCTAACTTTATGAGCAAAATTAGAGTTCCTAAAGGACCAGACCCCATTCATAACAGGAGAATTGGGGTTAAAGGAGGGCCTCCCAGAGGAGCTTAG

Protein sequence

MRSGDHSCCYFSYLKVLLGAVVVGLFVWLLIIGSPTPGRTTSWPEAESEVEGSHVMKPAKELANNNHPKLDPNFMSKIRVPKGPDPIHNRRIGVKGGPPRGA

Homology

[Close]

BLAST of HG10015285 vs. NCBI nr
Match: XP_038891924.1 (uncharacterized protein LOC120081268 [Benincasa hispida])

HSP 1 Score: 174.9 bits (442), Expect = 3.6e-40
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 1   MRSGDHSCCYFSYLKVLLGAVVVGLFVWLLIIGSPTPGRTTS-WPEAESEVEGSHVMKPA 60
           MRS D SC YFSYLKVLLGAVVVGLFVWLLI+GS  PGRTTS  P AESEVEGSHVMK A
Sbjct: 1   MRSVD-SCSYFSYLKVLLGAVVVGLFVWLLIVGSLPPGRTTSRRPAAESEVEGSHVMKQA 60

Query: 61  KELANNNHPKLDPNFMSKIRVPKGPDPIHNRRIGVKGGPPRGA 103
           +ELANNNHPKLDPNFMSK++VPKGPDPIHNRRIGVKGGPPRGA
Sbjct: 61  EELANNNHPKLDPNFMSKVKVPKGPDPIHNRRIGVKGGPPRGA 102

[Close]

BLAST of HG10015285 vs. NCBI nr
Match: XP_011655655.1 (uncharacterized protein LOC105435565 [Cucumis sativus] >KGN51858.1 hypothetical protein Csa_008237 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 5.1e-34
Identity = 83/109 (76.15%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MRSGDHSCCYFSYLKVLLGAVVVGLFVWLLIIGS--PTPGRTTSW---PEAESEVEGSHV 60
           M+S D SCCYFSYLKVLLGAVVVGLFVWLL++GS  P PGRT SW    E+  +VEG H 
Sbjct: 1   MKSVD-SCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHA 60

Query: 61  MKPAK-ELANNNHPK-LDPNFMSKIRVPKGPDPIHNRRIGVKGGPPRGA 103
           MK A+ +LA NNHPK LDPNFMSK+RVPKGPDPIHNRRIGVKGGPPRGA
Sbjct: 61  MKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108

[Close]

BLAST of HG10015285 vs. NCBI nr
Match: KAG7030819.1 (hypothetical protein SDJN02_04856, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 6.2e-24
Identity = 65/98 (66.33%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 7   SCCYFSYLKVLLGAVVVGLFVWLLIIGSPTPG-----RTTSWPEAESEVEGSHVMKPAKE 66
           SCC FSY KVLLGAV VG+FVWLLI+G P  G     +TTSWP A SE EGSH MK AKE
Sbjct: 6   SCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSH-MKQAKE 65

Query: 67  LANNNHPKLDPNFMSKIRVPKGPDPIHNRRIGVKGGPP 100
           L          NFMSK++VPKGPDPIHNRR GVKG PP
Sbjct: 66  L----------NFMSKVKVPKGPDPIHNRRTGVKGRPP 92

[Close]

BLAST of HG10015285 vs. NCBI nr
Match: XP_022151235.1 (uncharacterized protein LOC111019209 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 60/107 (56.07%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MRSGDHSCCYFSYLKVLLGAVVVGLFVWLLIIGSPTPGRTTSWPEAES-----EVEGSHV 60
           MRS + + C FSYLK LL A+VVGLF+W+L++G P    +   P  E+        GSHV
Sbjct: 1   MRS-EGNLCLFSYLKFLLQALVVGLFLWILMVGLP---ESRERPAVETTNGLLATVGSHV 60

Query: 61  MKPAKELANNNHPKLDPNFMSKIRVPKGPDPIHNRRIGVKGGPPRGA 103
            K  K L NNNH  LD NFMSK+RVPKGPDPIHNRR+G+ GGPP  A
Sbjct: 61  -KQVKVLPNNNHQDLDLNFMSKVRVPKGPDPIHNRRVGINGGPPSRA 102

[Close]

BLAST of HG10015285 vs. NCBI nr
Match: CAB4264503.1 (unnamed protein product [Prunus armeniaca] >CAB4295113.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-08
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 3   SGDHSCCYFSYLKVLLGAVVVGLFVWLLIIGS-PTPGRTTSWPEAESEVEGSHVMKPAKE 62
           SG  SC    +LK+  G + V  F+ +L++G+  T G +T    + +    S   KPA  
Sbjct: 4   SGGVSC----FLKLFFGTLAVMGFICVLLVGTLETQGGSTKTATSTAAAPESFSEKPADV 63

Query: 63  LANNN---HPKLDPNFMSKIRVPKGPDPIHNRRIGVKGGPP 100
           +   N   HP+LD N+MSK RVP GPDPIHNRR G  G PP
Sbjct: 64  VGRENKLVHPELDLNYMSKRRVPNGPDPIHNRRAGNSGRPP 100

[Close]

BLAST of HG10015285 vs. ExPASy TrEMBL
Match: A0A0A0KQF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604030 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.5e-34
Identity = 83/109 (76.15%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MRSGDHSCCYFSYLKVLLGAVVVGLFVWLLIIGS--PTPGRTTSW---PEAESEVEGSHV 60
           M+S D SCCYFSYLKVLLGAVVVGLFVWLL++GS  P PGRT SW    E+  +VEG H 
Sbjct: 1   MKSVD-SCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHA 60

Query: 61  MKPAK-ELANNNHPK-LDPNFMSKIRVPKGPDPIHNRRIGVKGGPPRGA 103
           MK A+ +LA NNHPK LDPNFMSK+RVPKGPDPIHNRRIGVKGGPPRGA
Sbjct: 61  MKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108

[Close]

BLAST of HG10015285 vs. ExPASy TrEMBL
Match: A0A6J1DAM7 (uncharacterized protein LOC111019209 OS=Momordica charantia OX=3673 GN=LOC111019209 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.7e-20
Identity = 60/107 (56.07%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MRSGDHSCCYFSYLKVLLGAVVVGLFVWLLIIGSPTPGRTTSWPEAES-----EVEGSHV 60
           MRS + + C FSYLK LL A+VVGLF+W+L++G P    +   P  E+        GSHV
Sbjct: 1   MRS-EGNLCLFSYLKFLLQALVVGLFLWILMVGLP---ESRERPAVETTNGLLATVGSHV 60

Query: 61  MKPAKELANNNHPKLDPNFMSKIRVPKGPDPIHNRRIGVKGGPPRGA 103
            K  K L NNNH  LD NFMSK+RVPKGPDPIHNRR+G+ GGPP  A
Sbjct: 61  -KQVKVLPNNNHQDLDLNFMSKVRVPKGPDPIHNRRVGINGGPPSRA 102

[Close]

BLAST of HG10015285 vs. ExPASy TrEMBL
Match: A0A6J5TL47 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS6329 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.0e-09
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 3   SGDHSCCYFSYLKVLLGAVVVGLFVWLLIIGS-PTPGRTTSWPEAESEVEGSHVMKPAKE 62
           SG  SC    +LK+  G + V  F+ +L++G+  T G +T    + +    S   KPA  
Sbjct: 4   SGGVSC----FLKLFFGTLAVMGFICVLLVGTLETQGGSTKTATSTAAAPESFSEKPADV 63

Query: 63  LANNN---HPKLDPNFMSKIRVPKGPDPIHNRRIGVKGGPP 100
           +   N   HP+LD N+MSK RVP GPDPIHNRR G  G PP
Sbjct: 64  VGRENKLVHPELDLNYMSKRRVPNGPDPIHNRRAGNSGRPP 100

[Close]

BLAST of HG10015285 vs. ExPASy TrEMBL
Match: M5XZR3 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G263100 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-08
Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 3   SGDHSCCYFSYLKVLLGAVVVGLFVWLLIIGS-PTPGRTTSWPEAESEVEGSHVMKPAKE 62
           SG  SC    +LK+  G + V  F+ +L++G+  T G  T    + +    S   KPA  
Sbjct: 4   SGGVSC----FLKLFFGTLAVMGFICVLLVGTLETQGGLTKTATSTAAAPESFSEKPADV 63

Query: 63  LANNN---HPKLDPNFMSKIRVPKGPDPIHNRRIGVKGGPP 100
           +   N   HP+LD N+MSK RVP GPDPIHNRR G  G PP
Sbjct: 64  VGRENKLVHPELDLNYMSKRRVPNGPDPIHNRRAGSSGRPP 100

[Close]

BLAST of HG10015285 vs. ExPASy TrEMBL
Match: A0A5E4FFI3 (PREDICTED: CLAVATA3/ESR (CLE)-related OS=Prunus dulcis OX=3755 GN=ALMOND_2B029038 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-08
Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 3   SGDHSCCYFSYLKVLLGAVVVGLFVWLLIIGS-PTPGRTTSWPEAESEVEGSHVMKPAKE 62
           SG  SC    +LK+  G + V  F+ +L++G+  T G  T    + +    S   KPA  
Sbjct: 4   SGGVSC----FLKLFFGTLAVMGFICVLLVGTLETQGGLTKTATSTAAAPESFSEKPADV 63

Query: 63  LANNN---HPKLDPNFMSKIRVPKGPDPIHNRRIGVKGGPP 100
           +   N   HP+LD N+MSK RVP GPDPIHNRR G  G PP
Sbjct: 64  VGRENKLVHPELDLNYMSKRRVPNGPDPIHNRRAGSSGRPP 100

The following BLAST results are available for this feature:

BLAST of HG10015285 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891924.1	3.6e-40	87.38	uncharacterized protein LOC120081268 [Benincasa hispida]	[more]
XP_011655655.1	5.1e-34	76.15	uncharacterized protein LOC105435565 [Cucumis sativus] >KGN51858.1 hypothetical ...	[more]
KAG7030819.1	6.2e-24	66.33	hypothetical protein SDJN02_04856, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022151235.1	1.6e-19	56.07	uncharacterized protein LOC111019209 [Momordica charantia]	[more]
CAB4264503.1	1.6e-08	42.57	unnamed protein product [Prunus armeniaca] >CAB4295113.1 unnamed protein product...	[more]

BLAST of HG10015285 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10015285 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQF7	2.5e-34	76.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604030 PE=4 SV=1	[more]
A0A6J1DAM7	7.7e-20	56.07	uncharacterized protein LOC111019209 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J5TL47	8.0e-09	42.57	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS6329 PE=4 SV...	[more]
M5XZR3	1.0e-08	42.57	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G263100 PE=4 SV=1	[more]
A0A5E4FFI3	1.0e-08	42.57	PREDICTED: CLAVATA3/ESR (CLE)-related OS=Prunus dulcis OX=3755 GN=ALMOND_2B02903...	[more]

BLAST of HG10015285 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..102
None	No IPR available	PANTHER	PTHR34277:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 13..100
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 13..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015285.1	HG10015285.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0016021	integral component of membrane