HG10015216 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015216
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pectin lyase-like superfamily protein
Location	Chr02: 24900586 .. 24901005 (-)
RNA-Seq Expression	HG10015216
Synteny	HG10015216

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATATGAACAGGGAGGAATTGGGTCAGTGAAGAATGTATCATTCTCAAACATCCAAGTTTCTGATGTAAAGGTTCCCATTATGATAGACCAATACTATTGCGACAAGTACAGATGCAAGAACCAAACAGGAGCAGTTGCAATTTCAGGTATAACATACGATCAAATCATAGGAAGTTACACTGTACAGCCTATTCATTTAGCCTGTAGCAGCCAAATCCCATGCGTAGACGTTGATCTTATTGACATCCAGCTGAAGCCATCTTCAGAATCCAGAGGCTTTCAAAGCTCCCTATGTTTGAATTCTTATGGTAAATCTCAGGCCCCTCTTCTTCCTACTAGCATAGACTATTGCCTGAGAAGGGGTGGTGGCGCTGTAAGGAGAATTGCAAGGTCCCATGATCATGTCTGCTACTAA

mRNA sequence

ATGGAATATGAACAGGGAGGAATTGGGTCAGTGAAGAATGTATCATTCTCAAACATCCAAGTTTCTGATGTAAAGGTTCCCATTATGATAGACCAATACTATTGCGACAAGTACAGATGCAAGAACCAAACAGGAGCAGTTGCAATTTCAGGTATAACATACGATCAAATCATAGGAAGTTACACTGTACAGCCTATTCATTTAGCCTGTAGCAGCCAAATCCCATGCGTAGACGTTGATCTTATTGACATCCAGCTGAAGCCATCTTCAGAATCCAGAGGCTTTCAAAGCTCCCTATGTTTGAATTCTTATGGTAAATCTCAGGCCCCTCTTCTTCCTACTAGCATAGACTATTGCCTGAGAAGGGGTGGTGGCGCTGTAAGGAGAATTGCAAGGTCCCATGATCATGTCTGCTACTAA

Coding sequence (CDS)

ATGGAATATGAACAGGGAGGAATTGGGTCAGTGAAGAATGTATCATTCTCAAACATCCAAGTTTCTGATGTAAAGGTTCCCATTATGATAGACCAATACTATTGCGACAAGTACAGATGCAAGAACCAAACAGGAGCAGTTGCAATTTCAGGTATAACATACGATCAAATCATAGGAAGTTACACTGTACAGCCTATTCATTTAGCCTGTAGCAGCCAAATCCCATGCGTAGACGTTGATCTTATTGACATCCAGCTGAAGCCATCTTCAGAATCCAGAGGCTTTCAAAGCTCCCTATGTTTGAATTCTTATGGTAAATCTCAGGCCCCTCTTCTTCCTACTAGCATAGACTATTGCCTGAGAAGGGGTGGTGGCGCTGTAAGGAGAATTGCAAGGTCCCATGATCATGTCTGCTACTAA

Protein sequence

MEYEQGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY

Homology

[Close]

BLAST of HG10015216 vs. NCBI nr
Match: XP_038891503.1 (polygalacturonase At1g48100 isoform X2 [Benincasa hispida])

HSP 1 Score: 271.2 bits (692), Expect = 5.1e-69
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKY+CKNQTGAVAISGITYDQIIGSYTVQ
Sbjct: 246 QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYKCKNQTGAVAISGITYDQIIGSYTVQ 305

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGG 124
           PIHLACSSQIPCVDVDLIDIQLKPSSESR FQSSLC NSYGKSQAPLLPTSIDYCLRRG 
Sbjct: 306 PIHLACSSQIPCVDVDLIDIQLKPSSESRDFQSSLCWNSYGKSQAPLLPTSIDYCLRRGS 365

Query: 125 GAVRRIARSHDHVCY 140
           GAVRRIARSHDHVCY
Sbjct: 366 GAVRRIARSHDHVCY 380

[Close]

BLAST of HG10015216 vs. NCBI nr
Match: XP_038891502.1 (polygalacturonase At1g48100 isoform X1 [Benincasa hispida])

HSP 1 Score: 271.2 bits (692), Expect = 5.1e-69
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKY+CKNQTGAVAISGITYDQIIGSYTVQ
Sbjct: 247 QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYKCKNQTGAVAISGITYDQIIGSYTVQ 306

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGG 124
           PIHLACSSQIPCVDVDLIDIQLKPSSESR FQSSLC NSYGKSQAPLLPTSIDYCLRRG 
Sbjct: 307 PIHLACSSQIPCVDVDLIDIQLKPSSESRDFQSSLCWNSYGKSQAPLLPTSIDYCLRRGS 366

Query: 125 GAVRRIARSHDHVCY 140
           GAVRRIARSHDHVCY
Sbjct: 367 GAVRRIARSHDHVCY 381

[Close]

BLAST of HG10015216 vs. NCBI nr
Match: XP_008446184.2 (PREDICTED: polygalacturonase At1g48100 [Cucumis melo])

HSP 1 Score: 264.2 bits (674), Expect = 6.2e-67
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQ
Sbjct: 316 QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKSKCKNQTGAVAISGITYDQIIGSYSVQ 375

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGG 124
           PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+SLC NSYGKSQAPLLPTSID CLRRGG
Sbjct: 376 PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQNSLCWNSYGKSQAPLLPTSIDSCLRRGG 435

Query: 125 GAVRRIARSHDHVCY 140
           GAVRRIARSHD+VCY
Sbjct: 436 GAVRRIARSHDYVCY 450

[Close]

BLAST of HG10015216 vs. NCBI nr
Match: TYK15622.1 (polygalacturonase [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 6.2e-67
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQ
Sbjct: 309 QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKSKCKNQTGAVAISGITYDQIIGSYSVQ 368

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGG 124
           PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+SLC NSYGKSQAPLLPTSID CLRRGG
Sbjct: 369 PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQNSLCWNSYGKSQAPLLPTSIDSCLRRGG 428

Query: 125 GAVRRIARSHDHVCY 140
           GAVRRIARSHD+VCY
Sbjct: 429 GAVRRIARSHDYVCY 443

[Close]

BLAST of HG10015216 vs. NCBI nr
Match: KAA0034297.1 (polygalacturonase [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 6.2e-67
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQ
Sbjct: 306 QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKSKCKNQTGAVAISGITYDQIIGSYSVQ 365

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGG 124
           PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+SLC NSYGKSQAPLLPTSID CLRRGG
Sbjct: 366 PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQNSLCWNSYGKSQAPLLPTSIDSCLRRGG 425

Query: 125 GAVRRIARSHDHVCY 140
           GAVRRIARSHD+VCY
Sbjct: 426 GAVRRIARSHDYVCY 440

[Close]

BLAST of HG10015216 vs. ExPASy Swiss-Prot
Match: Q949Z1 (Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-18
Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGG GSV N+ F NIQ+ +V   I++DQYYC    C+N+T AV +  + Y  I G+Y V+
Sbjct: 344 QGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSKDCRNETSAVKVFDVEYRNIKGTYDVR 403

Query: 65  --PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRR 124
             PIH ACS  + C ++ + +++L P  E        C N+YGK +   +P  ID CL  
Sbjct: 404 SPPIHFACSDTVACTNITMSEVELLP-EEGELVDDPFCWNAYGKQETLTIP-PID-CLLD 463

Query: 125 GGGAV 128
           G   V
Sbjct: 464 GSPVV 465

[Close]

BLAST of HG10015216 vs. ExPASy Swiss-Prot
Match: Q94AJ5 (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g80170 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.0e-17
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYR-CKNQTGAVAISGITYDQIIG-SYT 64
           QGG G V  + F NI++++V  PI+IDQYYCD  + C NQT A++I  I++  + G S +
Sbjct: 311 QGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSAS 370

Query: 65  VQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLP 114
            + I ++CS   PC ++ L DI L+PS+   GF  S C  +YG S   + P
Sbjct: 371 KEAIKISCSDSSPCRNILLQDIDLEPSN-GDGFTESFCWEAYGSSSGQVYP 420

[Close]

BLAST of HG10015216 vs. ExPASy Swiss-Prot
Match: O23147 (Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-14
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIG-SYTV 64
           QGG G+ KN+ F NI++ +VK PI+IDQ YCDK +C++Q  AV +  + Y  I G S T 
Sbjct: 326 QGGSGTAKNIKFQNIRMENVKNPIIIDQDYCDKDKCEDQESAVQVKNVVYKNISGTSATD 385

Query: 65  QPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLP 114
             I L CS + PC  + L ++++K  + S       C N+  K+Q  + P
Sbjct: 386 VAITLNCSEKYPCQGIVLENVKIKGGTAS-------CKNANVKNQGTVSP 428

[Close]

BLAST of HG10015216 vs. ExPASy Swiss-Prot
Match: P43212 (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-13
Identity = 47/134 (35.07%), Postives = 69/134 (51.49%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYC-DKYRCKNQTGAVAISGITYDQIIG-SYT 64
           QGG G   ++ + N+++ + + PI+I+Q+YC     C+NQ  AV I  +TY  I G S T
Sbjct: 317 QGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKNIRGTSAT 376

Query: 65  VQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRR 124
              I L CS  +PC D+ L DI LK +S      S L  N+ G     ++P     C   
Sbjct: 377 AAAIQLKCSDSMPCKDIKLSDISLKLTSGK--IASCLNDNANGYFSGHVIPA----CKNL 436

Query: 125 GGGAVRRIARSHDH 137
              A R+ ++SH H
Sbjct: 437 SPSAKRKESKSHKH 444

[Close]

BLAST of HG10015216 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 40/112 (35.71%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYC-DKYRCKNQTGAVAISGITYDQIIG-SYT 64
           QGG G    +++ N+++ + + PI+I+Q+YC     C+NQ  AV I G+TY  I G S T
Sbjct: 317 QGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSAT 376

Query: 65  VQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPT 115
              I L CS  +PC  + L ++ LK +S      S +  N+ G     L+PT
Sbjct: 377 AAAIQLMCSDSVPCTGIQLSNVSLKLTSGKPA--SCVDKNARGFYSGRLIPT 426

[Close]

BLAST of HG10015216 vs. ExPASy TrEMBL
Match: A0A5A7SYE1 (Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G002970 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQ
Sbjct: 306 QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKSKCKNQTGAVAISGITYDQIIGSYSVQ 365

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGG 124
           PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+SLC NSYGKSQAPLLPTSID CLRRGG
Sbjct: 366 PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQNSLCWNSYGKSQAPLLPTSIDSCLRRGG 425

Query: 125 GAVRRIARSHDHVCY 140
           GAVRRIARSHD+VCY
Sbjct: 426 GAVRRIARSHDYVCY 440

[Close]

BLAST of HG10015216 vs. ExPASy TrEMBL
Match: A0A5D3CVS9 (Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001190 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQ
Sbjct: 309 QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKSKCKNQTGAVAISGITYDQIIGSYSVQ 368

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGG 124
           PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+SLC NSYGKSQAPLLPTSID CLRRGG
Sbjct: 369 PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQNSLCWNSYGKSQAPLLPTSIDSCLRRGG 428

Query: 125 GAVRRIARSHDHVCY 140
           GAVRRIARSHD+VCY
Sbjct: 429 GAVRRIARSHDYVCY 443

[Close]

BLAST of HG10015216 vs. ExPASy TrEMBL
Match: A0A1S3BEF8 (polygalacturonase At1g48100 OS=Cucumis melo OX=3656 GN=LOC103488989 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQ
Sbjct: 316 QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKSKCKNQTGAVAISGITYDQIIGSYSVQ 375

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGG 124
           PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+SLC NSYGKSQAPLLPTSID CLRRGG
Sbjct: 376 PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQNSLCWNSYGKSQAPLLPTSIDSCLRRGG 435

Query: 125 GAVRRIARSHDHVCY 140
           GAVRRIARSHD+VCY
Sbjct: 436 GAVRRIARSHDYVCY 450

[Close]

BLAST of HG10015216 vs. ExPASy TrEMBL
Match: A0A0A0KQ72 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G599870 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.1e-67
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQ
Sbjct: 204 QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKSKCKNQTGAVAISGITYDQIIGSYSVQ 263

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGG 124
           PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+S+C NSYGKSQAPLLPTSID CLRRGG
Sbjct: 264 PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQNSICWNSYGKSQAPLLPTSIDSCLRRGG 323

Query: 125 GAVRRIARSHDHVCY 140
           GAVRRIARSHD+VCY
Sbjct: 324 GAVRRIARSHDYVCY 338

[Close]

BLAST of HG10015216 vs. ExPASy TrEMBL
Match: A0A6J1HSE8 (polygalacturonase At1g48100 OS=Cucurbita maxima OX=3661 GN=LOC111466350 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.7e-66
Identity = 123/135 (91.11%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGG+GSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGI YDQIIGSYTVQ
Sbjct: 328 QGGVGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGIKYDQIIGSYTVQ 387

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGG 124
           PIHLACSSQIPC+DVDLI IQL PSS SRGFQS+LC NSYGKSQAPL+P+SIDYCLRRG 
Sbjct: 388 PIHLACSSQIPCIDVDLIGIQLNPSSGSRGFQSALCWNSYGKSQAPLVPSSIDYCLRRGS 447

Query: 125 GAVRRIARSHDHVCY 140
           GAVRRIARSHDH CY
Sbjct: 448 GAVRRIARSHDHACY 462

[Close]

BLAST of HG10015216 vs. TAIR 10
Match: AT3G26610.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-47
Identity = 85/142 (59.86%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGG+G VKN++FSNIQV DVKVPI+IDQYYCDK +CKNQT AV+ISG+ Y+ I+GS+TVQ
Sbjct: 327 QGGLGVVKNLTFSNIQVKDVKVPIVIDQYYCDKSKCKNQTRAVSISGVKYNNIVGSFTVQ 386

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQS-----SLCLNSYGKSQAPLLPTSIDYC 124
           P+ +ACS+ +PC+DVDL+DI+L+PS   RG Q+     +LC NSYGK+Q PL+P+SI YC
Sbjct: 387 PVRIACSNNVPCMDVDLMDIRLRPSGGIRGLQTHQQQQALCWNSYGKTQGPLVPSSIGYC 446

Query: 125 LRR---GGGAVRRIARSHDHVC 139
           LR+   GG   ++++RS+D +C
Sbjct: 447 LRKSNIGGYYSQKVSRSYDKIC 468

[Close]

BLAST of HG10015216 vs. TAIR 10
Match: AT1G10640.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 139.4 bits (350), Expect = 2.1e-33
Identity = 66/134 (49.25%), Postives = 90/134 (67.16%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGG+GSVK + FSNIQ++ V++PI I+Q+YCD  +CKNQT AVA+ G+TY++I G+YTV+
Sbjct: 402 QGGVGSVKGIIFSNIQLNQVQIPITINQFYCDHSKCKNQTSAVAVEGVTYERIKGTYTVK 461

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGG 124
           P+H ACS   PCVDV L  I+LKP  E      + C  ++G+   P LP  ID CL+ G 
Sbjct: 462 PVHFACSDNFPCVDVQLSSIELKPVQEKYRMYDAYCWQTFGELNTPTLP-PID-CLKIGK 521

Query: 125 GAVRRIARSHDHVC 139
               ++   HD VC
Sbjct: 522 PPRNKVQSDHD-VC 532

[Close]

BLAST of HG10015216 vs. TAIR 10
Match: AT1G60590.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 127.9 bits (320), Expect = 6.5e-30
Identity = 60/131 (45.80%), Postives = 86/131 (65.65%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGGIGSVK + FSNIQ+++V++PI+IDQ+YCD  +C N T AV++ G+TY++I G+YTV+
Sbjct: 409 QGGIGSVKGILFSNIQLTEVQLPIVIDQFYCDHSKCMNHTSAVSVEGVTYEKIRGTYTVK 468

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCLRRGG 124
           P+H ACS   PC+DV L  I+LKP           C  ++G+  +  +P  ID CL+ G 
Sbjct: 469 PVHFACSDSFPCIDVQLSGIELKPVQLQYHMYDPFCWKTFGELNSATVP-PID-CLQIGK 528

Query: 125 GAVRRIARSHD 136
            A   +   HD
Sbjct: 529 PARNGVHSDHD 537

[Close]

BLAST of HG10015216 vs. TAIR 10
Match: AT5G14650.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-25
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGG GSVK V FSNIQVS+V  PI+IDQYYCD   C N+T AVA+S I Y  I G+YT +
Sbjct: 305 QGGSGSVKQVMFSNIQVSNVANPIIIDQYYCDGGGCHNETSAVAVSNINYINIKGTYTKE 364

Query: 65  PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLP 114
           P+  ACS  +PC  + L  I+LKP++         C  ++G+ +   LP
Sbjct: 365 PVRFACSDSLPCTGISLSTIELKPATGKASSLDPFCWKAHGELKTKTLP 413

[Close]

BLAST of HG10015216 vs. TAIR 10
Match: AT1G56710.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 6.5e-22
Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 5   QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ 64
           QGG GSV  + FSNI + +V+ PIMIDQYYC    C NQT AV IS + Y  I G+Y ++
Sbjct: 314 QGGSGSVSRIVFSNILMVNVRNPIMIDQYYCQTNNCANQTSAVIISDVLYANIKGTYDLR 373

Query: 65  --PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAPLLPTSIDYCL 121
             PIH  CS  +PC ++ L ++ L P S+ +  ++  C N+YG  +  + P    YCL
Sbjct: 374 SPPIHFGCSDSVPCTNLTLTEVDLFP-SKGQHLENPFCWNAYGSMKITVPPV---YCL 427

The following BLAST results are available for this feature:

BLAST of HG10015216 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891503.1	5.1e-69	97.04	polygalacturonase At1g48100 isoform X2 [Benincasa hispida]	[more]
XP_038891502.1	5.1e-69	97.04	polygalacturonase At1g48100 isoform X1 [Benincasa hispida]	[more]
XP_008446184.2	6.2e-67	94.81	PREDICTED: polygalacturonase At1g48100 [Cucumis melo]	[more]
TYK15622.1	6.2e-67	94.81	polygalacturonase [Cucumis melo var. makuwa]	[more]
KAA0034297.1	6.2e-67	94.81	polygalacturonase [Cucumis melo var. makuwa]	[more]

BLAST of HG10015216 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q949Z1	1.5e-18	40.00	Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV...	[more]
Q94AJ5	8.0e-17	41.44	Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g8017...	[more]
O23147	2.8e-14	39.09	Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1	[more]
P43212	4.1e-13	35.07	Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1	[more]
Q7M1E7	1.3e-11	35.71	Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1	[more]

BLAST of HG10015216 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYE1	3.0e-67	94.81	Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G002...	[more]
A0A5D3CVS9	3.0e-67	94.81	Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001...	[more]
A0A1S3BEF8	3.0e-67	94.81	polygalacturonase At1g48100 OS=Cucumis melo OX=3656 GN=LOC103488989 PE=3 SV=1	[more]
A0A0A0KQ72	5.1e-67	94.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G599870 PE=3 SV=1	[more]
A0A6J1HSE8	9.7e-66	91.11	polygalacturonase At1g48100 OS=Cucurbita maxima OX=3661 GN=LOC111466350 PE=3 SV=...	[more]

BLAST of HG10015216 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26610.1	2.6e-47	59.86	Pectin lyase-like superfamily protein	[more]
AT1G10640.1	2.1e-33	49.25	Pectin lyase-like superfamily protein	[more]
AT1G60590.1	6.5e-30	45.80	Pectin lyase-like superfamily protein	[more]
AT5G14650.1	3.7e-25	48.62	Pectin lyase-like superfamily protein	[more]
AT1G56710.1	6.5e-22	43.22	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..119 e-value: 4.8E-24 score: 87.0
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 5..91 e-value: 2.2E-18 score: 66.4
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 5..127
None	No IPR available	PANTHER	PTHR31375:SF92	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 5..127
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 6..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015216.1	HG10015216.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity