HG10015144 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015144
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-type domain-containing protein
Location	Chr02: 24255766 .. 24257117 (+)
RNA-Seq Expression	HG10015144
Synteny	HG10015144

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTATCAGCTCGAAAAATTCTCTCATCAGGATTCCCTGGAAGTCTTGGAGGCGGATATTCAGTATGCAAATTCTCTGTGAGTTTTCCTCTTCTTTTACCCCTTTTAATTGTATTAAGTACTTTTCTTAATTTCCCCTTTACAATCGTGATGATCGACATCTTTAGTTTTGTTTCTACCTGGAAGTGATTATAAGAGTAGTTTGGTTTTTCCCAAAATAGAAAGAAACTGCGTTTTGAAAGGGGGTACAATACGTATAAACTGTTGTCTGTTGGGGTTTTGAATTTTGATGATGCCCTTTTTAGACGTCTGATTGTTTTTGGTTTGATTTTTGGTCTTTTAGGGCGGCTGCAATCCCCATGGCAAAAGGGGGTGCTTATCTTCAAATGAAGTTGGTTTATAATCACTTGGCTCCCATTGTTCTGTTTTTGCTACAATGGATGGATTGTTCTTGCACTTGCTTACTTCCAAGATATTTAAACCTCTTCCACATACTTGTGTACAAGGTCTGTTGGCTTTTGTAGTTGTAGACTATTGATGATTATATGAAATTTCTTTCGACTGCATCGGTATCAGTATGATATGGTATCTTATGGTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCAATTCAGGTATATCCAGAGGGAAAACAAAAACGACATATATCCAGGCATGGAAGGAAGGCAACTATTAGGGACTTCTATGGTACTAACTTGTTAAGTTTGTTAGCTGGTGTTCTTTTCTTTTTAAGTATCTCTTGTATTCTGATCTTGTTTGTTTTGAATTCCAGCTATAATATTGCCTTCGCTTCAGCGAATCCACGGTAGCTTGGATAAGTTGGACGATTGCAAGGAAGGGCATCACTGGATTGAGATGTCTAGCAAGAAGAGAGGTGATAAAGATGGTAGACTTATGAACATCGATATGAAGCGAGAAGATGAGTGTGGTATTTGCTTGGAGCCCTGTACAAAGATGGTTTTGCCGAATTGCTGTCATTCAATGTGCATCAAATGCTACCGAAATTGGTAAAAACAAGTCTTATTAAGCATCTTCATTGTCTATGAAGTACTTTGAAGTGGCCTCTGTGCTCAAGTGCTCTTTCTTCCTACATTACAGGAATACAAGGTCAGCGTCCTGTCCATTTTGTCGTGGCAGCTTAAAGAGAGTCAACTCAGAGGACTTATGGGTGCTCACCTGTAGCGATGATGTGGTTGATGCCGAAACTGTTTCCAAGGAGGACATGTTGCGCTTTCATCGCTATATAAACAGCCTTCCAAAAGACTATCCAGATGCCCTTTTCGTAGTATATTCCGAGTATCTAATTTAG

mRNA sequence

ATGTATTATCAGCTCGAAAAATTCTCTCATCAGGATTCCCTGGAAGTCTTGGAGGCGGATATTCAGTATGCAAATTCTCTGGCGGCTGCAATCCCCATGGCAAAAGGGGGTGCTTATCTTCAAATGAAGTTGGTTTATAATCACTTGGCTCCCATTGTTCTGTTTTTGCTACAATGGATGGATTGTTCTTGCACTTGCTTACTTCCAAGATATTTAAACCTCTTCCACATACTTGTGTACAAGCGAATCCACGGTAGCTTGGATAAGTTGGACGATTGCAAGGAAGGGCATCACTGGATTGAGATGTCTAGCAAGAAGAGAGGTGATAAAGATGGTAGACTTATGAACATCGATATGAAGCGAGAAGATGAGTGTGGTATTTGCTTGGAGCCCTGTACAAAGATGGTTTTGCCGAATTGCTGTCATTCAATGTGCATCAAATGCTACCGAAATTGGAATACAAGGTCAGCGTCCTGTCCATTTTGTCGTGGCAGCTTAAAGAGAGTCAACTCAGAGGACTTATGGGTGCTCACCTGTAGCGATGATGTGGTTGATGCCGAAACTGTTTCCAAGGAGGACATGTTGCGCTTTCATCGCTATATAAACAGCCTTCCAAAAGACTATCCAGATGCCCTTTTCGTAGTATATTCCGAGTATCTAATTTAG

Coding sequence (CDS)

ATGTATTATCAGCTCGAAAAATTCTCTCATCAGGATTCCCTGGAAGTCTTGGAGGCGGATATTCAGTATGCAAATTCTCTGGCGGCTGCAATCCCCATGGCAAAAGGGGGTGCTTATCTTCAAATGAAGTTGGTTTATAATCACTTGGCTCCCATTGTTCTGTTTTTGCTACAATGGATGGATTGTTCTTGCACTTGCTTACTTCCAAGATATTTAAACCTCTTCCACATACTTGTGTACAAGCGAATCCACGGTAGCTTGGATAAGTTGGACGATTGCAAGGAAGGGCATCACTGGATTGAGATGTCTAGCAAGAAGAGAGGTGATAAAGATGGTAGACTTATGAACATCGATATGAAGCGAGAAGATGAGTGTGGTATTTGCTTGGAGCCCTGTACAAAGATGGTTTTGCCGAATTGCTGTCATTCAATGTGCATCAAATGCTACCGAAATTGGAATACAAGGTCAGCGTCCTGTCCATTTTGTCGTGGCAGCTTAAAGAGAGTCAACTCAGAGGACTTATGGGTGCTCACCTGTAGCGATGATGTGGTTGATGCCGAAACTGTTTCCAAGGAGGACATGTTGCGCTTTCATCGCTATATAAACAGCCTTCCAAAAGACTATCCAGATGCCCTTTTCGTAGTATATTCCGAGTATCTAATTTAG

Protein sequence

MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWMDCSCTCLLPRYLNLFHILVYKRIHGSLDKLDDCKEGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKCYRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI

Homology

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BLAST of HG10015144 vs. NCBI nr
Match: XP_038893224.1 (E3 ubiquitin-protein ligase AIRP2-like [Benincasa hispida] >XP_038893225.1 E3 ubiquitin-protein ligase AIRP2-like [Benincasa hispida])

HSP 1 Score: 445.7 bits (1145), Expect = 2.4e-121
Identity = 218/253 (86.17%), Postives = 219/253 (86.56%), Query Frame = 0


Query: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWM 60
           MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGG YLQMKLVYNHLAPIVLFLLQWM
Sbjct: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGVYLQMKLVYNHLAPIVLFLLQWM 60

Query: 61  DCSCTCLLPRYLNLFHILVYK--------------------------------RIHGSLD 120
           DCSCTCLLPRYLNLFHILVYK                                RIHGSLD
Sbjct: 61  DCSCTCLLPRYLNLFHILVYKVYPEGKQKRNISRHGRKATIRDFYAIILPSLQRIHGSLD 120

Query: 121 KLDDCKEGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180
           KLDDCKEGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC
Sbjct: 121 KLDDCKEGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180

Query: 181 YRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDY 222
           YRNWNTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVDAET+SKEDMLRFHRYINSLPKDY
Sbjct: 181 YRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETLSKEDMLRFHRYINSLPKDY 240

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BLAST of HG10015144 vs. NCBI nr
Match: XP_008446102.1 (PREDICTED: E3 ubiquitin-protein ligase RNF8-B [Cucumis melo] >KAA0034229.1 E3 ubiquitin-protein ligase RNF8-B [Cucumis melo var. makuwa] >TYK15691.1 E3 ubiquitin-protein ligase RNF8-B [Cucumis melo var. makuwa])

HSP 1 Score: 441.0 bits (1133), Expect = 5.9e-120
Identity = 215/253 (84.98%), Postives = 217/253 (85.77%), Query Frame = 0


Query: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWM 60
           MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGG YLQMKLVYNHLAPIVLFLLQWM
Sbjct: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGVYLQMKLVYNHLAPIVLFLLQWM 60

Query: 61  DCSCTCLLPRYLNLFHILVYK--------------------------------RIHGSLD 120
           DCSCTCLLPRYLNLFHILVYK                                RIHGSLD
Sbjct: 61  DCSCTCLLPRYLNLFHILVYKVYPEGKQKQNISRHGRKATIRDFYAIILPSLQRIHGSLD 120

Query: 121 KLDDCKEGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180
           KLDDCKEGHHWIEMSSKKRGDKDGRL NIDMKREDECGICLEPCTKMVLPNCCHSMCIKC
Sbjct: 121 KLDDCKEGHHWIEMSSKKRGDKDGRLKNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180

Query: 181 YRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDY 222
           YRNWNTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKEDML+FHRYINSLPKDY
Sbjct: 181 YRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDTETVSKEDMLQFHRYINSLPKDY 240

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BLAST of HG10015144 vs. NCBI nr
Match: XP_004135295.1 (E3 ubiquitin-protein ligase AIRP2 [Cucumis sativus] >KGN51710.1 hypothetical protein Csa_007993 [Cucumis sativus])

HSP 1 Score: 433.0 bits (1112), Expect = 1.6e-117
Identity = 212/253 (83.79%), Postives = 215/253 (84.98%), Query Frame = 0


Query: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWM 60
           MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGG YLQMKLVYNHLAPIVLFLLQWM
Sbjct: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGVYLQMKLVYNHLAPIVLFLLQWM 60

Query: 61  DCSCTCLLPRYLNLFHILVYK--------------------------------RIHGSLD 120
           DCSCTCLLPRYLNLFHILVYK                                RIHGSLD
Sbjct: 61  DCSCTCLLPRYLNLFHILVYKVHPEGKQKQNISRHGRKATIRDFYAIILPSLQRIHGSLD 120

Query: 121 KLDDCKEGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180
           KLDDCKE HHWIEMSSKKR DKDGRL NI+MKREDECGICLEPCTKMVLPNCCHSMCIKC
Sbjct: 121 KLDDCKEEHHWIEMSSKKRVDKDGRLKNIEMKREDECGICLEPCTKMVLPNCCHSMCIKC 180

Query: 181 YRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDY 222
           YRNWNTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKEDML+FHRYINSLPKDY
Sbjct: 181 YRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDTETVSKEDMLQFHRYINSLPKDY 240

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BLAST of HG10015144 vs. NCBI nr
Match: XP_022151983.1 (putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Momordica charantia] >XP_022151984.1 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Momordica charantia])

HSP 1 Score: 417.5 bits (1072), Expect = 7.0e-113
Identity = 207/253 (81.82%), Postives = 211/253 (83.40%), Query Frame = 0


Query: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWM 60
           MYYQL KFSHQDSLEVLEADIQYANSLAAAIPMAKGG YLQMKL YN LAPIVLFLLQWM
Sbjct: 1   MYYQLAKFSHQDSLEVLEADIQYANSLAAAIPMAKGGPYLQMKLAYNQLAPIVLFLLQWM 60

Query: 61  DCSCTCLLPRYLNLFHILVYK-------------------------------RIHGSLDK 120
           DCSCTCLLPRYLNLFHILVYK                               RIHGSLD 
Sbjct: 61  DCSCTCLLPRYLNLFHILVYKVYPEGKQKGISRHGRKATIRDFYAIILPSLQRIHGSLDT 120

Query: 121 LDDCKEGHHWIEMSSKKRG-DKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180
           LDDC EG HWIE+ SKKRG DK+GRLMNIDMKREDECGICLEPCTKMVLPNCCH+MCIKC
Sbjct: 121 LDDCDEGCHWIEIPSKKRGCDKEGRLMNIDMKREDECGICLEPCTKMVLPNCCHAMCIKC 180

Query: 181 YRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDY 222
           YRNWNTRS SCPFCRGSLKRVNSEDLWVLTC+DDVVDAET SKEDMLRFHRYINSLPKDY
Sbjct: 181 YRNWNTRSESCPFCRGSLKRVNSEDLWVLTCNDDVVDAETASKEDMLRFHRYINSLPKDY 240

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BLAST of HG10015144 vs. NCBI nr
Match: XP_022956578.1 (RING-H2 finger protein ATL47-like [Cucurbita moschata])

HSP 1 Score: 416.4 bits (1069), Expect = 1.6e-112
Identity = 206/253 (81.42%), Postives = 209/253 (82.61%), Query Frame = 0


Query: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWM 60
           MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPM KGG YLQMKLVYNHLAPI LFLLQWM
Sbjct: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMEKGGGYLQMKLVYNHLAPIALFLLQWM 60

Query: 61  DCSCTCLLPRYLNLFHILVYK--------------------------------RIHGSLD 120
           DCSCTCLLPRYL+LFHILVYK                                RIHGSLD
Sbjct: 61  DCSCTCLLPRYLSLFHILVYKVHPEGKQKRNISRHGRKATIRDFYAIILPSLQRIHGSLD 120

Query: 121 KLDDCKEGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180
           KLDD +E H WIEM S KRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCH+MCIKC
Sbjct: 121 KLDDFEEEHRWIEMPSTKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHAMCIKC 180

Query: 181 YRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDY 222
           YRNWNTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDML F RYINSLPKDY
Sbjct: 181 YRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLCFRRYINSLPKDY 240

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BLAST of HG10015144 vs. ExPASy Swiss-Prot
Match: Q9M022 (E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-45
Identity = 101/239 (42.26%), Postives = 133/239 (55.65%), Query Frame = 0


Query: 9   SHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWMDCSCTCLL 68
           S +DSL+ LEADIQ+AN+LA+  P    G Y+QM+L Y+  A + LFLLQW DC      
Sbjct: 4   SFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCH----F 63

Query: 69  PRYLNLFHILVYK------------------------------RIHGSLDKLDDCKEGHH 128
              L L  IL+YK                              ++HG +  +++ K+   
Sbjct: 64  AGALGLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEI 123

Query: 129 WIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKCYRNWNTRSAS 188
             +   KK     G++  ID++RE+ECGICLE   K+VLP C HSMCI CYRNW  RS S
Sbjct: 124 CDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQS 183

Query: 189 CPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYS 218
           CPFCRGSLKRVNS DLW+ TCS ++ D   + KE++ R   YI+ LP    D   V Y+
Sbjct: 184 CPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLVPYA 238

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BLAST of HG10015144 vs. ExPASy TrEMBL
Match: A0A5D3CUV6 (E3 ubiquitin-protein ligase RNF8-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001890 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 2.9e-120
Identity = 215/253 (84.98%), Postives = 217/253 (85.77%), Query Frame = 0


Query: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWM 60
           MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGG YLQMKLVYNHLAPIVLFLLQWM
Sbjct: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGVYLQMKLVYNHLAPIVLFLLQWM 60

Query: 61  DCSCTCLLPRYLNLFHILVYK--------------------------------RIHGSLD 120
           DCSCTCLLPRYLNLFHILVYK                                RIHGSLD
Sbjct: 61  DCSCTCLLPRYLNLFHILVYKVYPEGKQKQNISRHGRKATIRDFYAIILPSLQRIHGSLD 120

Query: 121 KLDDCKEGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180
           KLDDCKEGHHWIEMSSKKRGDKDGRL NIDMKREDECGICLEPCTKMVLPNCCHSMCIKC
Sbjct: 121 KLDDCKEGHHWIEMSSKKRGDKDGRLKNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180

Query: 181 YRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDY 222
           YRNWNTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKEDML+FHRYINSLPKDY
Sbjct: 181 YRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDTETVSKEDMLQFHRYINSLPKDY 240

[Close]

BLAST of HG10015144 vs. ExPASy TrEMBL
Match: A0A1S3BE96 (E3 ubiquitin-protein ligase RNF8-B OS=Cucumis melo OX=3656 GN=LOC103488929 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 2.9e-120
Identity = 215/253 (84.98%), Postives = 217/253 (85.77%), Query Frame = 0


Query: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWM 60
           MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGG YLQMKLVYNHLAPIVLFLLQWM
Sbjct: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGVYLQMKLVYNHLAPIVLFLLQWM 60

Query: 61  DCSCTCLLPRYLNLFHILVYK--------------------------------RIHGSLD 120
           DCSCTCLLPRYLNLFHILVYK                                RIHGSLD
Sbjct: 61  DCSCTCLLPRYLNLFHILVYKVYPEGKQKQNISRHGRKATIRDFYAIILPSLQRIHGSLD 120

Query: 121 KLDDCKEGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180
           KLDDCKEGHHWIEMSSKKRGDKDGRL NIDMKREDECGICLEPCTKMVLPNCCHSMCIKC
Sbjct: 121 KLDDCKEGHHWIEMSSKKRGDKDGRLKNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180

Query: 181 YRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDY 222
           YRNWNTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKEDML+FHRYINSLPKDY
Sbjct: 181 YRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDTETVSKEDMLQFHRYINSLPKDY 240

[Close]

BLAST of HG10015144 vs. ExPASy TrEMBL
Match: A0A0A0KPZ5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G591750 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 7.8e-118
Identity = 212/253 (83.79%), Postives = 215/253 (84.98%), Query Frame = 0


Query: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWM 60
           MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGG YLQMKLVYNHLAPIVLFLLQWM
Sbjct: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGVYLQMKLVYNHLAPIVLFLLQWM 60

Query: 61  DCSCTCLLPRYLNLFHILVYK--------------------------------RIHGSLD 120
           DCSCTCLLPRYLNLFHILVYK                                RIHGSLD
Sbjct: 61  DCSCTCLLPRYLNLFHILVYKVHPEGKQKQNISRHGRKATIRDFYAIILPSLQRIHGSLD 120

Query: 121 KLDDCKEGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180
           KLDDCKE HHWIEMSSKKR DKDGRL NI+MKREDECGICLEPCTKMVLPNCCHSMCIKC
Sbjct: 121 KLDDCKEEHHWIEMSSKKRVDKDGRLKNIEMKREDECGICLEPCTKMVLPNCCHSMCIKC 180

Query: 181 YRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDY 222
           YRNWNTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKEDML+FHRYINSLPKDY
Sbjct: 181 YRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDTETVSKEDMLQFHRYINSLPKDY 240

[Close]

BLAST of HG10015144 vs. ExPASy TrEMBL
Match: A0A6J1DEP0 (putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Momordica charantia OX=3673 GN=LOC111019814 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.4e-113
Identity = 207/253 (81.82%), Postives = 211/253 (83.40%), Query Frame = 0


Query: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWM 60
           MYYQL KFSHQDSLEVLEADIQYANSLAAAIPMAKGG YLQMKL YN LAPIVLFLLQWM
Sbjct: 1   MYYQLAKFSHQDSLEVLEADIQYANSLAAAIPMAKGGPYLQMKLAYNQLAPIVLFLLQWM 60

Query: 61  DCSCTCLLPRYLNLFHILVYK-------------------------------RIHGSLDK 120
           DCSCTCLLPRYLNLFHILVYK                               RIHGSLD 
Sbjct: 61  DCSCTCLLPRYLNLFHILVYKVYPEGKQKGISRHGRKATIRDFYAIILPSLQRIHGSLDT 120

Query: 121 LDDCKEGHHWIEMSSKKRG-DKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180
           LDDC EG HWIE+ SKKRG DK+GRLMNIDMKREDECGICLEPCTKMVLPNCCH+MCIKC
Sbjct: 121 LDDCDEGCHWIEIPSKKRGCDKEGRLMNIDMKREDECGICLEPCTKMVLPNCCHAMCIKC 180

Query: 181 YRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDY 222
           YRNWNTRS SCPFCRGSLKRVNSEDLWVLTC+DDVVDAET SKEDMLRFHRYINSLPKDY
Sbjct: 181 YRNWNTRSESCPFCRGSLKRVNSEDLWVLTCNDDVVDAETASKEDMLRFHRYINSLPKDY 240

[Close]

BLAST of HG10015144 vs. ExPASy TrEMBL
Match: A0A6J1GXA6 (RING-H2 finger protein ATL47-like OS=Cucurbita moschata OX=3662 GN=LOC111458273 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 7.5e-113
Identity = 206/253 (81.42%), Postives = 209/253 (82.61%), Query Frame = 0


Query: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWM 60
           MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPM KGG YLQMKLVYNHLAPI LFLLQWM
Sbjct: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMEKGGGYLQMKLVYNHLAPIALFLLQWM 60

Query: 61  DCSCTCLLPRYLNLFHILVYK--------------------------------RIHGSLD 120
           DCSCTCLLPRYL+LFHILVYK                                RIHGSLD
Sbjct: 61  DCSCTCLLPRYLSLFHILVYKVHPEGKQKRNISRHGRKATIRDFYAIILPSLQRIHGSLD 120

Query: 121 KLDDCKEGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180
           KLDD +E H WIEM S KRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCH+MCIKC
Sbjct: 121 KLDDFEEEHRWIEMPSTKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHAMCIKC 180

Query: 181 YRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDY 222
           YRNWNTRS SCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDML F RYINSLPKDY
Sbjct: 181 YRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLCFRRYINSLPKDY 240

[Close]

BLAST of HG10015144 vs. TAIR 10
Match: AT1G24440.1 (RING/U-box superfamily protein )

HSP 1 Score: 293.1 bits (749), Expect = 1.8e-79
Identity = 152/253 (60.08%), Postives = 183/253 (72.33%), Query Frame = 0


Query: 1   MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWM 60
           MYYQL K S++DSL++LEADI++AN LAA IPM K G  LQMKLV ++LAP  +FLLQWM
Sbjct: 1   MYYQLTKSSYRDSLKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWM 60

Query: 61  DCSCTCLLPRYLNLFHILVYK------------------------------RIHGSLDKL 120
           D S  CLLPRY + FHIL+YK                              R+H +   L
Sbjct: 61  DFS--CLLPRYFDFFHILIYKVRADGRWNRSRYGRKATIREFYGVILPSLERLHINFADL 120

Query: 121 DDCKEGHHWIEMSSKKRGDKDG-RLMN-IDMKREDECGICLEPCTKMVLPNCCHSMCIKC 180
            D    +   +  +KK+ D +G R MN ID++REDECGICLEPCTKMVLPNCCH+MCIKC
Sbjct: 121 PDESLWYPNPKAITKKQYDIEGSRYMNSIDLEREDECGICLEPCTKMVLPNCCHAMCIKC 180

Query: 181 YRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDY 222
           YRNWNT+S SCPFCRGS+KRVNSEDLWVLTC +DVVD ETV+KED+LRF+ +INSLPKDY
Sbjct: 181 YRNWNTKSESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPKDY 240

[Close]

BLAST of HG10015144 vs. TAIR 10
Match: AT1G13195.1 (RING/U-box superfamily protein )

HSP 1 Score: 271.6 bits (693), Expect = 5.8e-73
Identity = 135/242 (55.79%), Postives = 167/242 (69.01%), Query Frame = 0


Query: 9   SHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWMDCSCTCLL 68
           S+ +SL+VLEAD+Q+ANSLA AIPM K    LQMKLV+++ A ++LFLL+W+D S +CL+
Sbjct: 15  SYYESLKVLEADVQHANSLAEAIPMGKNNVRLQMKLVHSNFASLLLFLLRWIDLSSSCLI 74

Query: 69  PRYLNLFHILVYK------------------------------RIHGSLDKLDDCKEGHH 128
           PRYLNLFH+LVYK                               +H +LD+L+    G  
Sbjct: 75  PRYLNLFHVLVYKVQSDGQPKLTTHGRKATISEFYGVILPSLQLLHSNLDELETTDIGFD 134

Query: 129 WIEMSSK-KRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKCYRNWNTRSA 188
              +S K  +  +  R  N  ++RE+ECGICLE CTKMVLPNCCHSMCIKCYRNWN +S 
Sbjct: 135 LKRLSKKITKEARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQ 194

Query: 189 SCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYS 220
           SCPFCRGS+KRVNSEDLWVL   +DVVD  T S+ED+ RF+ YINSLPKDYP+ALFVVY 
Sbjct: 195 SCPFCRGSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPEALFVVYY 254

[Close]

BLAST of HG10015144 vs. TAIR 10
Match: AT1G13195.2 (RING/U-box superfamily protein )

HSP 1 Score: 239.2 bits (609), Expect = 3.2e-63
Identity = 118/218 (54.13%), Postives = 145/218 (66.51%), Query Frame = 0


Query: 33  MAKGGAYLQMKLVYNHLAPIVLFLLQWMDCSCTCLLPRYLNLFHILVYK----------- 92
           M K    LQMKLV+++ A ++LFLL+W+D S +CL+PRYLNLFH+LVYK           
Sbjct: 1   MGKNNVRLQMKLVHSNFASLLLFLLRWIDLSSSCLIPRYLNLFHVLVYKVQSDGQPKLTT 60

Query: 93  -------------------RIHGSLDKLDDCKEGHHWIEMSSK-KRGDKDGRLMNIDMKR 152
                               +H +LD+L+    G     +S K  +  +  R  N  ++R
Sbjct: 61  HGRKATISEFYGVILPSLQLLHSNLDELETTDIGFDLKRLSKKITKEARSSRFSNAGLER 120

Query: 153 EDECGICLEPCTKMVLPNCCHSMCIKCYRNWNTRSASCPFCRGSLKRVNSEDLWVLTCSD 212
           E+ECGICLE CTKMVLPNCCHSMCIKCYRNWN +S SCPFCRGS+KRVNSEDLWVL   +
Sbjct: 121 EEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQSCPFCRGSMKRVNSEDLWVLAGDN 180

Query: 213 DVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYSEY 220
           DVVD  T S+ED+ RF+ YINSLPKDYP+ALFVVY EY
Sbjct: 181 DVVDTRTASREDLFRFYLYINSLPKDYPEALFVVYYEY 218

[Close]

BLAST of HG10015144 vs. TAIR 10
Match: AT5G01520.1 (RING/U-box superfamily protein )

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-46
Identity = 101/239 (42.26%), Postives = 133/239 (55.65%), Query Frame = 0


Query: 9   SHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWMDCSCTCLL 68
           S +DSL+ LEADIQ+AN+LA+  P    G Y+QM+L Y+  A + LFLLQW DC      
Sbjct: 4   SFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCH----F 63

Query: 69  PRYLNLFHILVYK------------------------------RIHGSLDKLDDCKEGHH 128
              L L  IL+YK                              ++HG +  +++ K+   
Sbjct: 64  AGALGLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEI 123

Query: 129 WIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKCYRNWNTRSAS 188
             +   KK     G++  ID++RE+ECGICLE   K+VLP C HSMCI CYRNW  RS S
Sbjct: 124 CDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQS 183

Query: 189 CPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALFVVYS 218
           CPFCRGSLKRVNS DLW+ TCS ++ D   + KE++ R   YI+ LP    D   V Y+
Sbjct: 184 CPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLVPYA 238

[Close]

BLAST of HG10015144 vs. TAIR 10
Match: AT5G58787.2 (RING/U-box superfamily protein )

HSP 1 Score: 172.9 bits (437), Expect = 2.8e-43
Identity = 90/221 (40.72%), Postives = 127/221 (57.47%), Query Frame = 0


Query: 5   LEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLQWMDCSC 64
           + K S +DSL+ LEADIQ+AN+LA   P  K GA +QM+L Y+  A   LFL+QW DC  
Sbjct: 1   MAKLSFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDCK- 60

Query: 65  TCLLPRYLNLFHILVYKRI------------HGSLDKLDDCKEGHHWIEMSSKKRGDKDG 124
              L  +L L  +L+Y                 S+ +  D  +         + R   + 
Sbjct: 61  ---LAGFLGLLRVLIYMTYADGKTTMSVYERKASIREFQDIDDSKQKEVCKMRYRKKDES 120

Query: 125 RLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKCYRNWNTRSASCPFCRGSLKRVNSE 184
            +  I+++RE+ECGIC+E  +K+VLPNC HS+CIKCYR+W  RS SCPFCR SLKRV+S 
Sbjct: 121 EMSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQSCPFCRDSLKRVDSG 180

Query: 185 DLWVLTCSDDVVDAETVSKEDMLRFHRYINSLPKDYPDALF 214
           DLW+    +D V+   +++E+  R   YI  LP   PD ++
Sbjct: 181 DLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVY 217

The following BLAST results are available for this feature:

BLAST of HG10015144 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893224.1	2.4e-121	86.17	E3 ubiquitin-protein ligase AIRP2-like [Benincasa hispida] >XP_038893225.1 E3 ub...	[more]
XP_008446102.1	5.9e-120	84.98	PREDICTED: E3 ubiquitin-protein ligase RNF8-B [Cucumis melo] >KAA0034229.1 E3 ub...	[more]
XP_004135295.1	1.6e-117	83.79	E3 ubiquitin-protein ligase AIRP2 [Cucumis sativus] >KGN51710.1 hypothetical pro...	[more]
XP_022151983.1	7.0e-113	81.82	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromati...	[more]
XP_022956578.1	1.6e-112	81.42	RING-H2 finger protein ATL47-like [Cucurbita moschata]	[more]

BLAST of HG10015144 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M022	1.7e-45	42.26	E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 ...	[more]

BLAST of HG10015144 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CUV6	2.9e-120	84.98	E3 ubiquitin-protein ligase RNF8-B OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BE96	2.9e-120	84.98	E3 ubiquitin-protein ligase RNF8-B OS=Cucumis melo OX=3656 GN=LOC103488929 PE=4 ...	[more]
A0A0A0KPZ5	7.8e-118	83.79	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G591750 P...	[more]
A0A6J1DEP0	3.4e-113	81.82	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromati...	[more]
A0A6J1GXA6	7.5e-113	81.42	RING-H2 finger protein ATL47-like OS=Cucurbita moschata OX=3662 GN=LOC111458273 ...	[more]

BLAST of HG10015144 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24440.1	1.8e-79	60.08	RING/U-box superfamily protein	[more]
AT1G13195.1	5.8e-73	55.79	RING/U-box superfamily protein	[more]
AT1G13195.2	3.2e-63	54.13	RING/U-box superfamily protein	[more]
AT5G01520.1	1.2e-46	42.26	RING/U-box superfamily protein	[more]
AT5G58787.2	2.8e-43	40.72	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 125..162 e-value: 7.5E-4 score: 28.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 123..163 e-value: 3.6E-7 score: 30.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 125..163 score: 11.766381
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 98..174 e-value: 3.9E-12 score: 47.4
None	No IPR available	PANTHER	PTHR15315:SF35	F21J9.10	coord: 5..81 coord: 81..221
None	No IPR available	PANTHER	PTHR15315	RING FINGER PROTEIN 41, 151	coord: 5..81 coord: 81..221
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 116..168
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 140..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015144.1	HG10015144.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity