HG10015107 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015107
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosomal protein L22p/L17e family protein isoform 1
Location	Chr02: 23943485 .. 23943760 (+)
RNA-Seq Expression	HG10015107
Synteny	HG10015107

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTCGTCATGGAGTTTGCTGAGAATTTGGTATTAAGACTTATGGAGGATCCTAAAGAGAGGGATCGCAAATTCAGAGAGCACGTTTACGCGGTCAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGTTATCCTCTCCGTCCTTACGGATTTTGGACGTTTGAACGCCATAATTCTCAGCTGAATTGGGACGCACAAATTAGCCAGGCACCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACATCAACAATAACTCCAAGTGA

mRNA sequence

ATGAAGTTCGTCATGGAGTTTGCTGAGAATTTGGTATTAAGACTTATGGAGGATCCTAAAGAGAGGGATCGCAAATTCAGAGAGCACGTTTACGCGGTCAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGTTATCCTCTCCGTCCTTACGGATTTTGGACGTTTGAACGCCATAATTCTCAGCTGAATTGGGACGCACAAATTAGCCAGGCACCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACATCAACAATAACTCCAAGTGA

Coding sequence (CDS)

ATGAAGTTCGTCATGGAGTTTGCTGAGAATTTGGTATTAAGACTTATGGAGGATCCTAAAGAGAGGGATCGCAAATTCAGAGAGCACGTTTACGCGGTCAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGTTATCCTCTCCGTCCTTACGGATTTTGGACGTTTGAACGCCATAATTCTCAGCTGAATTGGGACGCACAAATTAGCCAGGCACCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACATCAACAATAACTCCAAGTGA

Protein sequence

MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHNSQLNWDAQISQAPGRRDPYDDMLQDINNNSK

Homology

[Close]

BLAST of HG10015107 vs. NCBI nr
Match: XP_038891434.1 (uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 uncharacterized protein LOC120080854 [Benincasa hispida])

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKFVMEFAENLVLRLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYPLRPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLNWDAQISQAPGRRDPYDDMLQDINNNSK 92
          SQL WDAQISQAPGRRDPYDDMLQDINNNSK
Sbjct: 61 SQLKWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of HG10015107 vs. NCBI nr
Match: XP_022151828.1 (uncharacterized protein LOC111019716 [Momordica charantia])

HSP 1 Score: 190.7 bits (483), Expect = 5.7e-45
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKFVMEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYPLRPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLNWDAQISQAPGRRDPYDDMLQDINNNSK 92
          SQL WDAQISQAPGRRDPYDDMLQDINNNSK
Sbjct: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of HG10015107 vs. NCBI nr
Match: XP_022956462.1 (uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956464.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022998787.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998795.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998804.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998812.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_023526352.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526360.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526369.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 3.1e-43
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLNWDAQISQAPGRRDPYDDMLQDINNNSK 92
           QL WDAQISQ PGRRDPYDD+L DINNNSK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of HG10015107 vs. NCBI nr
Match: KAG7012731.1 (hypothetical protein SDJN02_25484, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.2 bits (461), Expect = 2.0e-42
Identity = 82/91 (90.11%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1   MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
           MKF+MEFAENLVLR+MEDPKERDRKFRE +YAVKDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 90  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 149

Query: 61  SQLNWDAQISQAPGRRDPYDDMLQDINNNSK 92
           +QL+WDAQISQ PGRRDPYDDMLQDI+NNSK
Sbjct: 150 AQLHWDAQISQVPGRRDPYDDMLQDIHNNSK 180

[Close]

BLAST of HG10015107 vs. NCBI nr
Match: XP_011655561.1 (uncharacterized protein LOC101213251 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 5.9e-42
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAE+LVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60

Query: 61 SQLNWDAQISQAPGRRDPYDDMLQDINNNSK 92
          SQL WD QISQ PGRRDPYDDMLQD NN+SK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 91

[Close]

BLAST of HG10015107 vs. ExPASy TrEMBL
Match: A0A6J1DD92 (uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019716 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.8e-45
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKFVMEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYPLRPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLNWDAQISQAPGRRDPYDDMLQDINNNSK 92
          SQL WDAQISQAPGRRDPYDDMLQDINNNSK
Sbjct: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of HG10015107 vs. ExPASy TrEMBL
Match: A0A6J1K907 (uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLNWDAQISQAPGRRDPYDDMLQDINNNSK 92
           QL WDAQISQ PGRRDPYDD+L DINNNSK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of HG10015107 vs. ExPASy TrEMBL
Match: A0A6J1GWE2 (uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC111458190 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLNWDAQISQAPGRRDPYDDMLQDINNNSK 92
           QL WDAQISQ PGRRDPYDD+L DINNNSK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of HG10015107 vs. ExPASy TrEMBL
Match: A0A1S3BE41 (uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.3e-42
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAE+LVLRLMEDPKERDR+FREHVYAVKDRCQKTKEMWS PLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLNWDAQISQAPGRRDPYDDMLQDINNNSK 92
          SQL WD QISQ PGRRDPYDD+LQD NNNSK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]

BLAST of HG10015107 vs. ExPASy TrEMBL
Match: A0A5A7SSK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002250 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.3e-42
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAE+LVLRLMEDPKERDR+FREHVYAVKDRCQKTKEMWS PLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLNWDAQISQAPGRRDPYDDMLQDINNNSK 92
          SQL WD QISQ PGRRDPYDD+LQD NNNSK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]

BLAST of HG10015107 vs. TAIR 10
Match: AT1G67350.1 (unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-35
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          M F+MEFAENLVLRLME+P+ERDRK REH+Y + +RC+K KEMW+ P+RPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 SQLNWDAQISQAPGRRDPYDDMLQD 86
          +QL WD QISQ  GRRDPYDD+L+D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

[Close]

BLAST of HG10015107 vs. TAIR 10
Match: AT1G67350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-35
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          M F+MEFAENLVLRLME+P+ERDRK REH+Y + +RC+K KEMW+ P+RPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 SQLNWDAQISQAPGRRDPYDDMLQD 86
          +QL WD QISQ  GRRDPYDD+L+D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

The following BLAST results are available for this feature:

BLAST of HG10015107 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891434.1	2.6e-45	97.80	uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 unchara...	[more]
XP_022151828.1	5.7e-45	96.70	uncharacterized protein LOC111019716 [Momordica charantia]	[more]
XP_022956462.1	3.1e-43	92.31	uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 unchar...	[more]
KAG7012731.1	2.0e-42	90.11	hypothetical protein SDJN02_25484, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_011655561.1	5.9e-42	87.91	uncharacterized protein LOC101213251 [Cucumis sativus]	[more]

BLAST of HG10015107 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10015107 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DD92	2.8e-45	96.70	uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1K907	1.5e-43	92.31	uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347...	[more]
A0A6J1GWE2	1.5e-43	92.31	uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]
A0A1S3BE41	8.3e-42	89.01	uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=...	[more]
A0A5A7SSK1	8.3e-42	89.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10015107 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67350.1	1.5e-35	74.12	unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacter...	[more]
AT1G67350.2	1.5e-35	74.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PFAM	PF17250	NDUFB11	coord: 1..85 e-value: 8.8E-52 score: 173.7
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PANTHER	PTHR37709	EXPRESSED PROTEIN	coord: 1..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015107.1	HG10015107.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I