HG10015104 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015104
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr02: 23908790 .. 23914075 (-)
RNA-Seq Expression	HG10015104
Synteny	HG10015104

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTGCTTGTGCTTCTTCCGCCATTGCGGCTGTGTCAATCTCTTCATCCAGGCAAATTTTATTTTTCTCTTAATTCATTTCTTTTATTTAATTTAATTTCCCATTCAATCCAATTAAACTAATTAATTCTTTGTTTTTTTTGCAGTTCCCAGAAAAATGGGTGCCCTAAGGCTTCTAATTTCCTTACCGGCAAGAAGCTGAGGCTGAGAAACTTAACTGCAGCCGCTGCCGTTGCTCCTCGATCAGCTCCGGTATGCGCCGCAGCTGACCCCAACAGACCGCTCTGGTTCCCTGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTTCCCGGCGACTTTGGCTTTGACCCTCTTGGTCTCGGTCAGTATTAAACTATTACTCAACACAGAGATTATAATCCTTTAATTTATTTATGTGCTTAGAGTGATTAATTAGAGATTAATATTGAAATAAATATATTTGATCTTTTAGTTACTTTTTTCTTTTTTACTTCTTTCCACTAGGTTGAAAATTAGTAAAATACATTTTAGTCCTTTTAAGTCTCATTAATTCTTCTTAGTTACGTACTTCTTCTATACTATTTTAATAAATCTAAATAGTTTTGAAATTAATTTTTATTCGAATGAGTTAAATAATAATAATAATAAAATACTTAAGTATTGATTGAGTTATCTCTATTTTTATACGTAACATTTAATTTTCTCTAATTAAAATTTTGTGCGTGGCCATGTTATGTTTTCTGTTTTTTTTAAAAAATTAAATTTTTTAGTATATAATAAAATAGGCTACATGTAATAGGTACCATCTAAATTACACTTAATCATTTTTCTAATAATAATAATATTACTAGTTATGTTAGAACATGAAAAACATTAACTATAACAAATGGTGGAAACTAATTTAAAAATTAGTTAAAAATATATGAACTATATTTAGATATTTAAAAGTATACCCAATAGGATTAAATGCTGTTAAAGAACTAAAATAATATTTTAACCATAGATTTTAAGTGCAATGTTGGTGAGTAATTTTAAAATTATTAAAATCACTTTTATTATATTTAAAATTAATTCTAAAAAATTCAAATGATCATAACAGTGTTTTTTTTTTTTAACGAGGAGATAATAACAAATCGTTATTGTGTGTAGCGTCTGATCCGGAGAGTCTGAGATGGAACCAGCAGGCGGAGCTGGTTCATTGCCGATGGGCAATGTTGGGGGCGGCCGGAATTTTCATCCCGGAATTCTTGACAAAGATCGGAATATTGAACACTCCGTCGTGGTACACCGCCGGTGAATTGGAATACTTCACCGACACAACCACTCTGTTCATCGTGGAACTCATTTTCATTGGTTGGGCTGAGGGTAGACGGTGGGCCGACATCCTCAAACCCGGTTGCGTCAACACCGACCCGATTTTCCCTAACAACAAGCTGACCGGAACCGACGTCGGGTACCCGGGCGGGCTTTGGTTCGACCCACTCGGGTGGGGCAGCGGGTCACCCGAAAAGATAAAGGAATTGAGAACGAAAGAGATAAAGAACGGGCGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTTTTCGCCGTGAGTTTTTAAATTTTTTTGGAATTTTTCAAAATAATTTTTTCCCCCCAAAAAAAAAGAAAATTACATTTTTGTCCATAAGTTTTGAATATAATTTTTATTTGGTTTATAGATTTTAAAGTATTACACATTTCATTGATTTTAATTTAGTACTTAAGTTGAAATTTGTTTTAATTTAATTTTTAAGTTTCAAAATTTACACTTCTAGCTTTAATTATAATTCTTTTAAATTAATCAATAGACATTATACACTAAAAACAAAAAGTGAATATTTAGTAAAAAACCAATGTTAAAAGTGTAAATCTTGAAACTTATGGACCAAATTAAAACAAAACTTAAACTTTAAGAGTAAAATTGTAACGATATTTTGAAATTTAAGAACTAAATTGAAATCAAATTCTAAACTTAAGGACTAAGAAGTATAACATTTTGAAATTTAAGAACCAAATAAAATTAAACTGAAAACTTAGGATAAAAAAGTATTTTTCCTAAATAATCGCTAGCACATATTTTATGTCAGTTGAACTACGATAATTTTTTTTTTTTTGTAATATTTTAAAATGTTTTAAACAATTAAAAATAATTTCAAACAATTTTTTGTAACATATGGTTGATTTTTGTTTGTGACAGGCTTTCACACCCAAGTGAAGAAATTTGAGGAGCATATAGGAGATGTAGCGCTGTGTTTGTGACTAAGGAAAAATTTCTGTATTAAAATCACAACTTTGTTCAAATCTCTGTGTTTATGTTGTCTGTGTATGATGGACATCATTATTATCAATTTAATGTACAAAATGAGATCACCAAATTAAGGAAGTTTAGTCCCACTTTGACTTCTATGAACTAATTTTAAGAATATTTCGTTTTAAATTATTCTAATATATAATCGAATGTAGTACTATATATAAATTATACGTAGAAGGTAAAGTTGTGATCTTTAATAGGTTGTGTCTATTTCAGATGTTCTTTTAATCTTTTATCTCATAGTAACAGATATCGAGTCTTAGTATGTTTAGTTGAGAAAAATCAATTTTGAATGCCAAATTACTAGTTATACATTACATTTTAGACCAGCGTAGTATACAAATTCAACTTTGATCGTTGTCCTTATGTTCTCTAGCTTTAAATAATTCAATGTAAACAACTTTGGTAATATTGTTTTAATGTTGATCGTCATGGTGCTTAATTATGTTTTTGGTTCAAATAATATAATATAATGTAGTTGTTTTTACTGCATGTGTGACCAAAACTCTTCCTTGCGATGAATATTACAATTTTGTCGTAATTTTGCAATGTTTTGGCTTTCATTGCTATATTTTTGTTGCTAGAAGATTTTGATTGCATGTATCAATGATAAGCCTCGGAGAAATACTACCCAACATGAAAATAATTAACATTTGATTGAGATTACAAGAAAATTGGAATTTTATAACACTTAAAACGGTTGACACTATTTTTTATGACACTTTTTAAACTATAATAATTAATTTTTTAATGATATTAGATTACTGCCAATAACAAACAATTACTCACGATTATAAATTATTTGTCAAGTGAAGGAATAAGATGACACTAAATAATCTTCGTAATAAATATCGCTCCACCAGTTTTTGTTAACCAACAACTTACAAGTGAGTATATTTAACCCTTTCTCTATGTCACTTACTTTAGATTAATATATATTTTAGTATTTTCACCAAATTTAGGTCTATTATATCTTCAACTATAAATGTTGTCAAAGAAAAAATGTTGCAGTAAAAGACAACACTAACTATTCTAGAACGTTCTTGAAGTATCTACATTATAACATTAATATGTAAATTAGACTTCTCTAGAATTATATTGAAGACGCATGTAGATATGTAAGAAGAAAGATCTAGAAATATCTTAGTTTTTATTTATGATCCAAGAAACTCAAGAATTCCTTTAGATCGGGATATTGCCATAGAAATATCTAGAATAGTTTAGATTCAAAAGAAATCTAGGAAAATTCTCTAGCTTAAGTTCAAGTATGTCACGCCTATAAATAGGAGTTGTATCCTCATTTGTAGTAAGAAAAGCAAAGAACAGAATAAAGAAAAGCAAGAGAGTTCGAAAGAAACTTAGAGTGAAAAGTGAGTGAGTGAGTGTGTCGAGAGTGAACAAAAGTGTTCATTTTTTCACATTCTTAATAAAAATTTCTTTCTTCTAAGAGATCATTTCTCTTTCTTTTGTGCTAAATTCTTCAACAAAAAAATTGGCTACTCTTTATCTGTCTCTATTTCATTTGTATGAATATATTTTAACATCATATATGTTGATCAGTTGTAGTTGTAGATCTCAAATATAACTAATTATTAAATTATTTTTTTTTTTGTTGACATTCTCCAACCAAAATTTTGAGCAATAGGATTCCACCCATCTCTCTGTATTCCCTTCGATCACAAACAGAATATATATATATATGTGTGTGAGACTATGAGTTGTTTTCAAATATAGTAAAATGTCACAATGGATAATGATAGACACTAATAGACATTTATATTTTGCTATATTTAAAAAATTTATTGTAGTTTTGCTATTTAAAACCATTATTTAACGTATATATATTCGCAATATGAGGCGATTCAACCTTGATAATATAACTAACTTTTTTTTTCAGATTTAAAATAAAGATATCTGTGAACAAACCAAAATAATTTAAAATAAAAATAAAACCAAACAGAGTCAATCATATAATATCACAGAAAGTGATGACATATAAAAAATAGTAATAAAAAAAAGATGTAATGGGAAATTTGCATATACACAAAAACAAGACATTTTCTCCAAATTTTATATCTGCAACTTGTTCATCACTCTCTTCTTTCCTCCAATTCTTTTTTTCATTATTATTATTATTATTATTTTATTTTATTTATAGGAAAAATCTCAGCATAATCTCTTCTCCACAAGCCAGACAGAACAGACACTCAAGAGATTCATTGAATTCAATAATTAAAAATTTAATTCAATTCATATCACCAAAGATTACACTGAAGAGGTTAATTTAATCCGATTTATATATGAACTTGCAATTAAAATCATAATCAACAAATCAAATGAAGTAAAATAAATAAACTCAGATTCAGAGAAAAGGAGAATAAAGAAAGAATTATAAAAATTAGTATAAAGAGAAGTATCGATTTCTATACGAATCTGAATTGAGTGAAATGCCTCACTCGCTCCTTGTAAATCTCAAGAACTCCCAATTACAGAGATTTTTTTTTTTTTTGTGCCCTAATAATTAATGGTGGAGATAAGGAAATATTATAGTGAGAGGGTGAATCAGGAGGAAGAGGAGGGATAATTGGATCGGCGGACGGAGATTTGGGCGGGGATAGGGCGGCCGGTGCCGGAACCGCCACAGCTGCTGCAGAACATGCGGCCAGAGCCGGAGCAGGTACGGCAGCCGATGTCGCCGTCGGACCAGCGGGAGCAGAGGCAGGGGACGCGGCCGGTGCCGTTGCAGGAGGGGCAGCGGGGGAAGGAGCCGGCCATGGGCTTGTGGTCCATGACGGATTTGACGAGGACGGCGCCGGCGAGGACGCTGAGGCCGGTGGCGAGTTGGGTGAGGACGATGGGAACCATGATTGA

mRNA sequence

ATGGCTTCTGCTTGTGCTTCTTCCGCCATTGCGGCTGTTTCCCAGAAAAATGGGTGCCCTAAGGCTTCTAATTTCCTTACCGGCAAGAAGCTGAGGCTGAGAAACTTAACTGCAGCCGCTGCCGTTGCTCCTCGATCAGCTCCGGTATGCGCCGCAGCTGACCCCAACAGACCGCTCTGGTTCCCTGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTTCCCGGCGACTTTGGCTTTGACCCTCTTGGTCTCGCGTCTGATCCGGAGAGTCTGAGATGGAACCAGCAGGCGGAGCTGGTTCATTGCCGATGGGCAATGTTGGGGGCGGCCGGAATTTTCATCCCGGAATTCTTGACAAAGATCGGAATATTGAACACTCCGTCGTGGTACACCGCCGGTGAATTGGAATACTTCACCGACACAACCACTCTGTTCATCGTGGAACTCATTTTCATTGGTTGGGCTGAGGGTAGACGGTGGGCCGACATCCTCAAACCCGGTTGCGTCAACACCGACCCGATTTTCCCTAACAACAAGCTGACCGGAACCGACGTCGGGTACCCGGGCGGGCTTTGGTTCGACCCACTCGGGTGGGGCAGCGGGTCACCCGAAAAGATAAAGGAATTGAGAACGAAAGAGATAAAGAACGGGCGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTTTTCGCCGGTGAATCAGGAGGAAGAGGAGGGATAATTGGATCGGCGGACGGAGATTTGGGCGGGGATAGGGCGGCCGGTGCCGGAACCGCCACAGCTGCTGCAGAACATGCGGCCAGAGCCGGAGCAGGTACGGCAGCCGATGTCGCCGTCGGACCAGCGGGAGCAGAGGCAGGGGACGCGGCCGGTGCCGTTGCAGGAGGGGCAGCGGGGGAAGGAGCCGGCCATGGGCTTGTGGTCCATGACGGATTTGACGAGGACGGCGCCGGCGAGGACGCTGAGGCCGGTGGCGAGTTGGGTGAGGACGATGGGAACCATGATTGA

Coding sequence (CDS)

ATGGCTTCTGCTTGTGCTTCTTCCGCCATTGCGGCTGTTTCCCAGAAAAATGGGTGCCCTAAGGCTTCTAATTTCCTTACCGGCAAGAAGCTGAGGCTGAGAAACTTAACTGCAGCCGCTGCCGTTGCTCCTCGATCAGCTCCGGTATGCGCCGCAGCTGACCCCAACAGACCGCTCTGGTTCCCTGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTTCCCGGCGACTTTGGCTTTGACCCTCTTGGTCTCGCGTCTGATCCGGAGAGTCTGAGATGGAACCAGCAGGCGGAGCTGGTTCATTGCCGATGGGCAATGTTGGGGGCGGCCGGAATTTTCATCCCGGAATTCTTGACAAAGATCGGAATATTGAACACTCCGTCGTGGTACACCGCCGGTGAATTGGAATACTTCACCGACACAACCACTCTGTTCATCGTGGAACTCATTTTCATTGGTTGGGCTGAGGGTAGACGGTGGGCCGACATCCTCAAACCCGGTTGCGTCAACACCGACCCGATTTTCCCTAACAACAAGCTGACCGGAACCGACGTCGGGTACCCGGGCGGGCTTTGGTTCGACCCACTCGGGTGGGGCAGCGGGTCACCCGAAAAGATAAAGGAATTGAGAACGAAAGAGATAAAGAACGGGCGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTTTTCGCCGGTGAATCAGGAGGAAGAGGAGGGATAATTGGATCGGCGGACGGAGATTTGGGCGGGGATAGGGCGGCCGGTGCCGGAACCGCCACAGCTGCTGCAGAACATGCGGCCAGAGCCGGAGCAGGTACGGCAGCCGATGTCGCCGTCGGACCAGCGGGAGCAGAGGCAGGGGACGCGGCCGGTGCCGTTGCAGGAGGGGCAGCGGGGGAAGGAGCCGGCCATGGGCTTGTGGTCCATGACGGATTTGACGAGGACGGCGCCGGCGAGGACGCTGAGGCCGGTGGCGAGTTGGGTGAGGACGATGGGAACCATGATTGA

Protein sequence

MASACASSAIAAVSQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAGESGGRGGIIGSADGDLGGDRAAGAGTATAAAEHAARAGAGTAADVAVGPAGAEAGDAAGAVAGGAAGEGAGHGLVVHDGFDEDGAGEDAEAGGELGEDDGNHD

Homology

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BLAST of HG10015104 vs. NCBI nr
Match: TYK15728.1 (chlorophyll a-b binding protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 614.0 bits (1582), Expect = 8.3e-172
Identity = 321/363 (88.43%), Postives = 325/363 (89.53%), Query Frame = 0


Query: 1   MASACASSAIAAV----SQKNGCPK-ASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADP 60
           MASACASSAIAAV    S KNGCPK ASNFL GKKLRLRNL AAA VAPRSAPVCAAADP
Sbjct: 1   MASACASSAIAAVAISSSSKNGCPKLASNFLAGKKLRLRNLNAAAVVAPRSAPVCAAADP 60

Query: 61  NRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI 120
           +RPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI
Sbjct: 61  DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI 120

Query: 121 PEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPI 180
           PEFLTKIGILNTPSWY+AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPI
Sbjct: 121 PEFLTKIGILNTPSWYSAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPI 180

Query: 181 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYT 240
           FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYT
Sbjct: 181 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYT 240

Query: 241 GTGPIDNLFAHLADPGHATVFAGESGGRGGIIGSADGDLGGDRAAGAGTATAAAEHAARA 300
           GTGPIDNLFAHLADPGHATVFA              GDL G RAAGAG ATAAAEH  RA
Sbjct: 241 GTGPIDNLFAHLADPGHATVFA--------------GDLSGKRAAGAGAATAAAEHTTRA 300

Query: 301 GAGTAADVAVGPAGAEAGDAAGAVAGGAAGEGAGHGLVVHDGFDEDGAGEDAEAGGELGE 359
           GAG AADV+VGPAGAE GDAA AVAG AAGEGAGHGLVVHDGFDEDGAGEDAEA     E
Sbjct: 301 GAGAAADVSVGPAGAETGDAASAVAGRAAGEGAGHGLVVHDGFDEDGAGEDAEAEARKRE 349

[Close]

BLAST of HG10015104 vs. NCBI nr
Match: XP_038892923.1 (chlorophyll a-b binding protein 7, chloroplastic [Benincasa hispida])

HSP 1 Score: 527.3 bits (1357), Expect = 1.0e-145
Identity = 251/262 (95.80%), Postives = 254/262 (96.95%), Query Frame = 0


Query: 2   ASACASSAIAAV------SQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADP 61
           +SACASSAIAAV      SQKNGCPKASNFLTGKKLRLRNLTAA AVAPRS PVCAAADP
Sbjct: 7   SSACASSAIAAVAISSSSSQKNGCPKASNFLTGKKLRLRNLTAATAVAPRSVPVCAAADP 66

Query: 62  NRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI 121
           +RPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI
Sbjct: 67  DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI 126

Query: 122 PEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPI 181
           PEFLTKIGILNTPSWY+AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPI
Sbjct: 127 PEFLTKIGILNTPSWYSAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPI 186

Query: 182 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYT 241
           FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYT
Sbjct: 187 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYT 246

Query: 242 GTGPIDNLFAHLADPGHATVFA 258
           GTGPIDNLFAHLADPGHATVFA
Sbjct: 247 GTGPIDNLFAHLADPGHATVFA 268

[Close]

BLAST of HG10015104 vs. NCBI nr
Match: XP_008446036.1 (PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Cucumis melo])

HSP 1 Score: 521.5 bits (1342), Expect = 5.6e-144
Identity = 251/264 (95.08%), Postives = 253/264 (95.83%), Query Frame = 0


Query: 1   MASACASSAIAAV------SQKNGCPK-ASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAA 60
           MASACASSAIAAV      S KNGCPK ASNFL GKKLRLRNL AAA VAPRSAPVCAAA
Sbjct: 1   MASACASSAIAAVAISSSSSSKNGCPKLASNFLAGKKLRLRNLNAAAVVAPRSAPVCAAA 60

Query: 61  DPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGI 120
           DP+RPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGI
Sbjct: 61  DPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGI 120

Query: 121 FIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTD 180
           FIPEFLTKIGILNTPSWY+AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTD
Sbjct: 121 FIPEFLTKIGILNTPSWYSAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTD 180

Query: 181 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHI 240
           PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHI
Sbjct: 181 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHI 240

Query: 241 YTGTGPIDNLFAHLADPGHATVFA 258
           YTGTGPIDNLFAHLADPGHATVFA
Sbjct: 241 YTGTGPIDNLFAHLADPGHATVFA 264

[Close]

BLAST of HG10015104 vs. NCBI nr
Match: XP_023541134.1 (chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 521.2 bits (1341), Expect = 7.3e-144
Identity = 249/263 (94.68%), Postives = 252/263 (95.82%), Query Frame = 0


Query: 1   MASACASSAIAAV------SQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAAD 60
           MASACASSAIA V      SQKNGCPKASNF+TGKKLRLR  T  AAVAPRSAPVCAAAD
Sbjct: 1   MASACASSAIATVAISSSSSQKNGCPKASNFVTGKKLRLRKYT-TAAVAPRSAPVCAAAD 60

Query: 61  PNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIF 120
           PNRPLWFPGSTPPPWLDGSLPGDFGFDPLGL+SDPESLRWNQQAELVHCRWAMLGAAGIF
Sbjct: 61  PNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIF 120

Query: 121 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 180
           IPEFLTKIGILNTPSWYTAGELEYFTDTTTLF+VELIFIGWAEGRRWADILKPGCVNTDP
Sbjct: 121 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDP 180

Query: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240
           IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY
Sbjct: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240

Query: 241 TGTGPIDNLFAHLADPGHATVFA 258
           TGTGPIDNLFAHLADPGHATVFA
Sbjct: 241 TGTGPIDNLFAHLADPGHATVFA 262

[Close]

BLAST of HG10015104 vs. NCBI nr
Match: XP_022957420.1 (chlorophyll a-b binding protein 7, chloroplastic [Cucurbita moschata] >XP_022998486.1 chlorophyll a-b binding protein 7, chloroplastic [Cucurbita maxima] >XP_023515906.1 chlorophyll a-b binding protein 7, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 521.2 bits (1341), Expect = 7.3e-144
Identity = 250/263 (95.06%), Postives = 253/263 (96.20%), Query Frame = 0


Query: 1   MASACASSAIAAV------SQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAAD 60
           MASACASSAIAAV      SQKNGCPK SNFLTGK+LRLR  T AAAVAPRSAPVCAAAD
Sbjct: 1   MASACASSAIAAVAISSSSSQKNGCPKVSNFLTGKRLRLRKYT-AAAVAPRSAPVCAAAD 60

Query: 61  PNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIF 120
           P+RPLWFPGSTPPPWLDGSLPGDFGFDPLGL+SDPESLRWNQQAELVHCRWAMLGAAGIF
Sbjct: 61  PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIF 120

Query: 121 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 180
           IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP
Sbjct: 121 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 180

Query: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240
           IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY
Sbjct: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240

Query: 241 TGTGPIDNLFAHLADPGHATVFA 258
           TGTGPIDNLFAHLADPGHATVFA
Sbjct: 241 TGTGPIDNLFAHLADPGHATVFA 262

[Close]

BLAST of HG10015104 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 1.5e-128
Identity = 222/269 (82.53%), Postives = 235/269 (87.36%), Query Frame = 0


Query: 1   MASACASSAIAAV------SQKNGC---PKASNFLTGKKLRLRNLTAAAAVAPRSAPVCA 60
           MASACASS IAAV      S++NG       ++FL G++LR+    +    A  +  VC 
Sbjct: 1   MASACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKY-STTPTARSATTVCV 60

Query: 61  AADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA 120
           AADP+RPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180
           GIFIPE LTKIGILNTPSWYTAGE EYFTDTTTLFIVEL+ IGWAEGRRWADI+KPGCVN
Sbjct: 121 GIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP KIKELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 241 HIYTGTGPIDNLFAHLADPGHATVFAGES 261
           HIYTGTGPIDNLFAHLADPGHAT+FA  S
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of HG10015104 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 7.1e-126
Identity = 224/271 (82.66%), Postives = 234/271 (86.35%), Query Frame = 0


Query: 1   MASACASSAIAAV------SQKN----GCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVC 60
           MASACASS IAAV      SQKN    G  KAS FL GK+LR+      A V  RS  V 
Sbjct: 1   MASACASSTIAAVAFSSPSSQKNGSIVGATKAS-FLGGKRLRVSKF--IAPVGSRSVAVS 60

Query: 61  A-AADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLG 120
           A AADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPESL+WN QAELVH RWAMLG
Sbjct: 61  AVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLG 120

Query: 121 AAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGC 180
           AAGIFIPEFLTKIG+LNTPSWYTAGE EYFTDTTTLF++EL+ IGWAEGRRWADI+KPGC
Sbjct: 121 AAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGC 180

Query: 181 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 240
           VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP KIKELRTKEIKNGRLAMLAVMGAW
Sbjct: 181 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAW 240

Query: 241 FQHIYTGTGPIDNLFAHLADPGHATVFAGES 261
           FQHIYTGTGPIDNLFAHLADPGHAT+FA  S
Sbjct: 241 FQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of HG10015104 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 6.7e-124
Identity = 210/257 (81.71%), Postives = 228/257 (88.72%), Query Frame = 0


Query: 2   ASACASSAIAAVSQKNGCPKASNFLTGKKLRL-RNLTAAAAVAPRSAPVCAAADPNRPLW 61
           +S CASSAIAA+S       + +FL GKKLRL + LT  A   P ++    AADP+RP+W
Sbjct: 3   SSLCASSAIAAIS-------SPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIW 62

Query: 62  FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLT 121
           FPGSTPP WLDGSLPGDFGFDPLGL+SDP+SL+WN QAE+VHCRWAMLGAAGIFIPEFLT
Sbjct: 63  FPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLT 122

Query: 122 KIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNK 181
           KIGILNTPSWYTAGE EYFTD TTLF+VELI IGWAEGRRWADI+KPG VNTDP+FPNNK
Sbjct: 123 KIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNK 182

Query: 182 LTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 241
           LTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI
Sbjct: 183 LTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 242

Query: 242 DNLFAHLADPGHATVFA 258
           DNLFAHLADPGHAT+FA
Sbjct: 243 DNLFAHLADPGHATIFA 252

[Close]

BLAST of HG10015104 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.4e-81
Identity = 139/236 (58.90%), Postives = 167/236 (70.76%), Query Frame = 0


Query: 22  ASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFD 81
           AS   TG +L    L    A     + VC    P+RPLWFPGS+PP WLDGSLPGDFGFD
Sbjct: 31  ASTSSTGGRLMRERLVVVRA-GKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFD 90

Query: 82  PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTD 141
           PLGL SDP++L+W  QAEL+H RWAML   GI IPE L ++G +   SWY AG  EYF D
Sbjct: 91  PLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFAD 150

Query: 142 TTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 201
           +TTLF+ +++ +GWAEGRRWAD++KPG V+ +P +P+      DVGYPGGLWFD + WG 
Sbjct: 151 STTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGR 210

Query: 202 GSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 258
           GSPE +  LRTKEIKNGRLAMLA +G  FQ  YT   PI+NL AHLADPGH  VF+
Sbjct: 211 GSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265

[Close]

BLAST of HG10015104 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.7e-58
Identity = 115/245 (46.94%), Postives = 147/245 (60.00%), Query Frame = 0


Query: 11  AAVSQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADPNRPLWFPGSTPPPWL 70
           A+ S    C     FLTG   RL    +  ++   +       +  +  W PG   P +L
Sbjct: 8   ASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYL 67

Query: 71  DGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 130
            GSL GD GFDPLGLA DPE+L+W  QAELV+ RWAMLG AG+ +PE  TKIGI+N P W
Sbjct: 68  TGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEW 127

Query: 131 YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 190
           Y AG+ +YF  ++TLF++E I   + E RRW DI  PG VN DPIF    L   +VGYPG
Sbjct: 128 YDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPG 187

Query: 191 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 250
           G+ F+PL +        +E + KE+ NGRLAMLA +G   QH  TG GP +NL  HL+DP
Sbjct: 188 GI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDP 246

Query: 251 GHATV 256
            H T+
Sbjct: 248 WHNTI 246

[Close]

BLAST of HG10015104 vs. ExPASy TrEMBL
Match: A0A5D3CWU8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002270 PE=3 SV=1)

HSP 1 Score: 614.0 bits (1582), Expect = 4.0e-172
Identity = 321/363 (88.43%), Postives = 325/363 (89.53%), Query Frame = 0


Query: 1   MASACASSAIAAV----SQKNGCPK-ASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADP 60
           MASACASSAIAAV    S KNGCPK ASNFL GKKLRLRNL AAA VAPRSAPVCAAADP
Sbjct: 1   MASACASSAIAAVAISSSSKNGCPKLASNFLAGKKLRLRNLNAAAVVAPRSAPVCAAADP 60

Query: 61  NRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI 120
           +RPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI
Sbjct: 61  DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI 120

Query: 121 PEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPI 180
           PEFLTKIGILNTPSWY+AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPI
Sbjct: 121 PEFLTKIGILNTPSWYSAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPI 180

Query: 181 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYT 240
           FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYT
Sbjct: 181 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYT 240

Query: 241 GTGPIDNLFAHLADPGHATVFAGESGGRGGIIGSADGDLGGDRAAGAGTATAAAEHAARA 300
           GTGPIDNLFAHLADPGHATVFA              GDL G RAAGAG ATAAAEH  RA
Sbjct: 241 GTGPIDNLFAHLADPGHATVFA--------------GDLSGKRAAGAGAATAAAEHTTRA 300

Query: 301 GAGTAADVAVGPAGAEAGDAAGAVAGGAAGEGAGHGLVVHDGFDEDGAGEDAEAGGELGE 359
           GAG AADV+VGPAGAE GDAA AVAG AAGEGAGHGLVVHDGFDEDGAGEDAEA     E
Sbjct: 301 GAGAAADVSVGPAGAETGDAASAVAGRAAGEGAGHGLVVHDGFDEDGAGEDAEAEARKRE 349

[Close]

BLAST of HG10015104 vs. ExPASy TrEMBL
Match: A0A1S3BDM5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488886 PE=3 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 2.7e-144
Identity = 251/264 (95.08%), Postives = 253/264 (95.83%), Query Frame = 0


Query: 1   MASACASSAIAAV------SQKNGCPK-ASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAA 60
           MASACASSAIAAV      S KNGCPK ASNFL GKKLRLRNL AAA VAPRSAPVCAAA
Sbjct: 1   MASACASSAIAAVAISSSSSSKNGCPKLASNFLAGKKLRLRNLNAAAVVAPRSAPVCAAA 60

Query: 61  DPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGI 120
           DP+RPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGI
Sbjct: 61  DPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGI 120

Query: 121 FIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTD 180
           FIPEFLTKIGILNTPSWY+AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTD
Sbjct: 121 FIPEFLTKIGILNTPSWYSAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTD 180

Query: 181 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHI 240
           PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHI
Sbjct: 181 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHI 240

Query: 241 YTGTGPIDNLFAHLADPGHATVFA 258
           YTGTGPIDNLFAHLADPGHATVFA
Sbjct: 241 YTGTGPIDNLFAHLADPGHATVFA 264

[Close]

BLAST of HG10015104 vs. ExPASy TrEMBL
Match: A0A6J1KAB5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493102 PE=3 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 3.5e-144
Identity = 250/263 (95.06%), Postives = 253/263 (96.20%), Query Frame = 0


Query: 1   MASACASSAIAAV------SQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAAD 60
           MASACASSAIAAV      SQKNGCPK SNFLTGK+LRLR  T AAAVAPRSAPVCAAAD
Sbjct: 1   MASACASSAIAAVAISSSSSQKNGCPKVSNFLTGKRLRLRKYT-AAAVAPRSAPVCAAAD 60

Query: 61  PNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIF 120
           P+RPLWFPGSTPPPWLDGSLPGDFGFDPLGL+SDPESLRWNQQAELVHCRWAMLGAAGIF
Sbjct: 61  PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIF 120

Query: 121 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 180
           IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP
Sbjct: 121 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 180

Query: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240
           IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY
Sbjct: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240

Query: 241 TGTGPIDNLFAHLADPGHATVFA 258
           TGTGPIDNLFAHLADPGHATVFA
Sbjct: 241 TGTGPIDNLFAHLADPGHATVFA 262

[Close]

BLAST of HG10015104 vs. ExPASy TrEMBL
Match: A0A6J1H0H5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458830 PE=3 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 3.5e-144
Identity = 250/263 (95.06%), Postives = 253/263 (96.20%), Query Frame = 0


Query: 1   MASACASSAIAAV------SQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAAD 60
           MASACASSAIAAV      SQKNGCPK SNFLTGK+LRLR  T AAAVAPRSAPVCAAAD
Sbjct: 1   MASACASSAIAAVAISSSSSQKNGCPKVSNFLTGKRLRLRKYT-AAAVAPRSAPVCAAAD 60

Query: 61  PNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIF 120
           P+RPLWFPGSTPPPWLDGSLPGDFGFDPLGL+SDPESLRWNQQAELVHCRWAMLGAAGIF
Sbjct: 61  PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIF 120

Query: 121 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 180
           IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP
Sbjct: 121 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 180

Query: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240
           IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY
Sbjct: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240

Query: 241 TGTGPIDNLFAHLADPGHATVFA 258
           TGTGPIDNLFAHLADPGHATVFA
Sbjct: 241 TGTGPIDNLFAHLADPGHATVFA 262

[Close]

BLAST of HG10015104 vs. ExPASy TrEMBL
Match: A0A6J1HNZ1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466406 PE=3 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 1.0e-143
Identity = 248/263 (94.30%), Postives = 251/263 (95.44%), Query Frame = 0


Query: 1   MASACASSAIAAV------SQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAAD 60
           MASACASSAIA V      SQKNGCPKASNF+TGKKLRLR  T   AVAPRSAPVCAAAD
Sbjct: 1   MASACASSAIATVAISSSSSQKNGCPKASNFVTGKKLRLRKYT-TVAVAPRSAPVCAAAD 60

Query: 61  PNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIF 120
           PNRPLWFPGSTPPPWLDGSLPGDFGFDPLGL+SDPESLRWNQQAELVHCRWAMLGAAGIF
Sbjct: 61  PNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIF 120

Query: 121 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 180
           IPEFLTKIGILNTPSWYTAGELEYFTDTTTLF+VELIFIGWAEGRRWADILKPGCVNTDP
Sbjct: 121 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDP 180

Query: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240
           IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY
Sbjct: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240

Query: 241 TGTGPIDNLFAHLADPGHATVFA 258
           TGTGPIDNLFAHLADPGHATVFA
Sbjct: 241 TGTGPIDNLFAHLADPGHATVFA 262

[Close]

BLAST of HG10015104 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 445.3 bits (1144), Expect = 4.8e-125
Identity = 210/257 (81.71%), Postives = 228/257 (88.72%), Query Frame = 0


Query: 2   ASACASSAIAAVSQKNGCPKASNFLTGKKLRL-RNLTAAAAVAPRSAPVCAAADPNRPLW 61
           +S CASSAIAA+S       + +FL GKKLRL + LT  A   P ++    AADP+RP+W
Sbjct: 3   SSLCASSAIAAIS-------SPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIW 62

Query: 62  FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLT 121
           FPGSTPP WLDGSLPGDFGFDPLGL+SDP+SL+WN QAE+VHCRWAMLGAAGIFIPEFLT
Sbjct: 63  FPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLT 122

Query: 122 KIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNK 181
           KIGILNTPSWYTAGE EYFTD TTLF+VELI IGWAEGRRWADI+KPG VNTDP+FPNNK
Sbjct: 123 KIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNK 182

Query: 182 LTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 241
           LTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI
Sbjct: 183 LTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 242

Query: 242 DNLFAHLADPGHATVFA 258
           DNLFAHLADPGHAT+FA
Sbjct: 243 DNLFAHLADPGHATIFA 252

[Close]

BLAST of HG10015104 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 304.7 bits (779), Expect = 1.0e-82
Identity = 139/236 (58.90%), Postives = 167/236 (70.76%), Query Frame = 0


Query: 22  ASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFD 81
           AS   TG +L    L    A     + VC    P+RPLWFPGS+PP WLDGSLPGDFGFD
Sbjct: 31  ASTSSTGGRLMRERLVVVRA-GKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFD 90

Query: 82  PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTD 141
           PLGL SDP++L+W  QAEL+H RWAML   GI IPE L ++G +   SWY AG  EYF D
Sbjct: 91  PLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFAD 150

Query: 142 TTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 201
           +TTLF+ +++ +GWAEGRRWAD++KPG V+ +P +P+      DVGYPGGLWFD + WG 
Sbjct: 151 STTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGR 210

Query: 202 GSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 258
           GSPE +  LRTKEIKNGRLAMLA +G  FQ  YT   PI+NL AHLADPGH  VF+
Sbjct: 211 GSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265

[Close]

BLAST of HG10015104 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 228.0 bits (580), Expect = 1.2e-59
Identity = 115/245 (46.94%), Postives = 147/245 (60.00%), Query Frame = 0


Query: 11  AAVSQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADPNRPLWFPGSTPPPWL 70
           A+ S    C     FLTG   RL    +  ++   +       +  +  W PG   P +L
Sbjct: 8   ASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYL 67

Query: 71  DGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 130
            GSL GD GFDPLGLA DPE+L+W  QAELV+ RWAMLG AG+ +PE  TKIGI+N P W
Sbjct: 68  TGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEW 127

Query: 131 YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 190
           Y AG+ +YF  ++TLF++E I   + E RRW DI  PG VN DPIF    L   +VGYPG
Sbjct: 128 YDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPG 187

Query: 191 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 250
           G+ F+PL +        +E + KE+ NGRLAMLA +G   QH  TG GP +NL  HL+DP
Sbjct: 188 GI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDP 246

Query: 251 GHATV 256
            H T+
Sbjct: 248 WHNTI 246

[Close]

BLAST of HG10015104 vs. TAIR 10
Match: AT5G28450.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 204.5 bits (519), Expect = 1.4e-52
Identity = 90/98 (91.84%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 160 RWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGR 219
           R  DI+KPG VNTDP+FPNNKLTGTD+GYPGGLWFDPLGWGSGSP KIKELRTKEIKNGR
Sbjct: 71  RAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGR 130

Query: 220 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 258
           LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 131 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 168

[Close]

BLAST of HG10015104 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 199.9 bits (507), Expect = 3.5e-51
Identity = 98/203 (48.28%), Postives = 128/203 (63.05%), Query Frame = 0


Query: 57  RPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIP 116
           R  W PG  PPP+LDG+L GD+GFDPLGL  DPESL+W  QAELVH R+AMLG AGI   
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 117 EFLTKIGILNTPSWYTAGELEY-FTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPI 176
           + L   GI N P WY AG +++ F  T TL +V+ + +G+AE +R+ D + PG    +  
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 177 F---PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 236
           F       L G + GYPGG   +PLG      +   + + KEIKNGRLAM+A++G + Q 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQA 225

Query: 237 IYTGTGPIDNLFAHLADPGHATV 256
             T TGPIDNL  HL++P H T+
Sbjct: 226 SVTHTGPIDNLVEHLSNPWHKTI 247

The following BLAST results are available for this feature:

BLAST of HG10015104 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15728.1	8.3e-172	88.43	chlorophyll a-b binding protein 7 [Cucumis melo var. makuwa]	[more]
XP_038892923.1	1.0e-145	95.80	chlorophyll a-b binding protein 7, chloroplastic [Benincasa hispida]	[more]
XP_008446036.1	5.6e-144	95.08	PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Cucumis melo]	[more]
XP_023541134.1	7.3e-144	94.68	chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita pepo subsp. pep...	[more]
XP_022957420.1	7.3e-144	95.06	chlorophyll a-b binding protein 7, chloroplastic [Cucurbita moschata] >XP_022998...	[more]

BLAST of HG10015104 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10708	1.5e-128	82.53	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
P13869	7.1e-126	82.66	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
Q9SYW8	6.7e-124	81.71	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
Q8LCQ4	1.4e-81	58.90	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
P27521	1.7e-58	46.94	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of HG10015104 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWU8	4.0e-172	88.43	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BDM5	2.7e-144	95.08	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1KAB5	3.5e-144	95.06	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1H0H5	3.5e-144	95.06	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HNZ1	1.0e-143	94.30	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of HG10015104 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61470.1	4.8e-125	81.71	photosystem I light harvesting complex gene 2	[more]
AT1G19150.1	1.0e-82	58.90	photosystem I light harvesting complex gene 6	[more]
AT3G47470.1	1.2e-59	46.94	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT5G28450.1	1.4e-52	91.84	Chlorophyll A-B binding family protein	[more]
AT1G45474.1	3.5e-51	48.28	photosystem I light harvesting complex gene 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 66..232 e-value: 2.5E-53 score: 180.9
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 67..252 e-value: 9.6E-77 score: 259.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 331..361
None	No IPR available	PANTHER	PTHR21649:SF116	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 1..258
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 52..256
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015104.1	HG10015104.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding