HG10015090 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015090
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	U5 small nuclear ribonucleoprotein 40 kDa protein
Location	Chr02: 23762803 .. 23763837 (+)
RNA-Seq Expression	HG10015090
Synteny	HG10015090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTCCCTTCAGAAGGAGAAAATGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCAACTGTTCCATATAATGCTCCTCAAGGACCTGGGCCGAATGGGAAACAACGAATGTCGAGTCTGCAATCACCGATCATGTTGTTGTCGGGCCATCAAAGTGCCATATATACAGTAAAGTTTAATCCAGATGGAAACGTGATTGCATCTGGGTCTCATGACAAGGAAATTTTTCTATGGAACGTACATGGGGATTGCAAGAACTTTATGGTTTTGTGAGGGCATAAGAATGCAGTTCTAGATCTTCATTGGACTATTGATGGATCTCAGATTGTTAGTGCCAGCCCCGATAAAACGTTGAGAGCATGGGATGTCGAGACTGGAAAACAAATTAAGAAGATGGCAGAGCACTCCTCCTTTGTCAATTCATGTTGTCCCACAAGAAAAGGGCCACCACTAATTGTCAGTGGATCGGACGATGGAACTGCAAAACTTTGGGATATGCGTCAAAGGGGTGCCATTCAAACATTCCCAGATAAATATCAGATTACAGCAGTAAGTTTCTCAGATGCATCAGATAAGATCTTCACTGGTGGAATTGACAACGATGTTAAGGTTTGGGATTTGCGCAAAGGTGAAGTTATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCTTATCTCCTCACTAATGGAATGGACTGCAAGCTCTGCATATGGGATATGCGACCATATGCGCCTCAAAACCGATGTGTGAAGATATTCGAAGGACACCAACATAACTTTGAAAAGAATCTATTGAAATGTAGTTGGTCTGCGGATGGTAGCAAGGTCACTGCGGGTAGTTCAGATCGGATGGTTTACATATGGGATACAACGTCTCGACGAATACTGTATAAGCTTCCTGGCCATACTGGATCTGTCAACGAGTGTGTCTTCCATCCCAGTGAGCCTATTGTTGCATCTTGCAGTAGTGATAAACAGATATATCTTGGGGAGATTTAA

mRNA sequence

ATGCAAGTCCCTTCAGAAGGAGAAAATGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCAACTGTTCCATATAATGCTCCTCAAGGACCTGGGCCGAATGGGAAACAACGAATGTCGAGTCTGCAATCACCGATCATGTTGTTGTCGGGCCATCAAAGTGCCATATATACAGTAAAGTTTAATCCAGATGGAAACGTGATTGCATCTGGGTCTCATGACAAGGAAATTTTTCTATGGAACATTGTTAGTGCCAGCCCCGATAAAACGTTGAGAGCATGGGATGTCGAGACTGGAAAACAAATTAAGAAGATGGCAGAGCACTCCTCCTTTGTCAATTCATGTTGTCCCACAAGAAAAGGGCCACCACTAATTGTCAGTGGATCGGACGATGGAACTGCAAAACTTTGGGATATGCGTCAAAGGGGTGCCATTCAAACATTCCCAGATAAATATCAGATTACAGCAGTAAGTTTCTCAGATGCATCAGATAAGATCTTCACTGGTGGAATTGACAACGATGTTAAGGTTTGGGATTTGCGCAAAGGTGAAGTTATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCTTATCTCCTCACTAATGGAATGGACTGCAAGCTCTGCATATGGGATATGCGACCATATGCGCCTCAAAACCGATGTGTGAAGATATTCGAAGGACACCAACATAACTTTGAAAAGAATCTATTGAAATGTAGTTGGTCTGCGGATGGTAGCAAGGTCACTGCGGGTAGTTCAGATCGGATGGTTTACATATGGGATACAACGTCTCGACGAATACTGTATAAGCTTCCTGGCCATACTGGATCTGTCAACGAGTGTGTCTTCCATCCCAGTGAGCCTATTGTTGCATCTTGCAGTAGTGATAAACAGATATATCTTGGGGAGATTTAA

Coding sequence (CDS)

ATGCAAGTCCCTTCAGAAGGAGAAAATGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCAACTGTTCCATATAATGCTCCTCAAGGACCTGGGCCGAATGGGAAACAACGAATGTCGAGTCTGCAATCACCGATCATGTTGTTGTCGGGCCATCAAAGTGCCATATATACAGTAAAGTTTAATCCAGATGGAAACGTGATTGCATCTGGGTCTCATGACAAGGAAATTTTTCTATGGAACATTGTTAGTGCCAGCCCCGATAAAACGTTGAGAGCATGGGATGTCGAGACTGGAAAACAAATTAAGAAGATGGCAGAGCACTCCTCCTTTGTCAATTCATGTTGTCCCACAAGAAAAGGGCCACCACTAATTGTCAGTGGATCGGACGATGGAACTGCAAAACTTTGGGATATGCGTCAAAGGGGTGCCATTCAAACATTCCCAGATAAATATCAGATTACAGCAGTAAGTTTCTCAGATGCATCAGATAAGATCTTCACTGGTGGAATTGACAACGATGTTAAGGTTTGGGATTTGCGCAAAGGTGAAGTTATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCTTATCTCCTCACTAATGGAATGGACTGCAAGCTCTGCATATGGGATATGCGACCATATGCGCCTCAAAACCGATGTGTGAAGATATTCGAAGGACACCAACATAACTTTGAAAAGAATCTATTGAAATGTAGTTGGTCTGCGGATGGTAGCAAGGTCACTGCGGGTAGTTCAGATCGGATGGTTTACATATGGGATACAACGTCTCGACGAATACTGTATAAGCTTCCTGGCCATACTGGATCTGTCAACGAGTGTGTCTTCCATCCCAGTGAGCCTATTGTTGCATCTTGCAGTAGTGATAAACAGATATATCTTGGGGAGATTTAA

Protein sequence

MQVPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI

Homology

[Close]

BLAST of HG10015090 vs. NCBI nr
Match: XP_008446018.1 (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA0034179.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa] >TYK15740.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 645.2 bits (1663), Expect = 2.9e-181
Identity = 310/344 (90.12%), Postives = 313/344 (90.99%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTV 60
           MQVPSEGENALATVGPRPMEWSTVPYN PQGPGPNGKQR SSL+SPIMLLSGHQSAIYT+
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWN-----------------------------IVSASPDKT 120
           KFNPDGNVIASGSHDKEIFLWN                             IVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTR+GPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 316
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of HG10015090 vs. NCBI nr
Match: XP_038877892.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Benincasa hispida])

HSP 1 Score: 642.1 bits (1655), Expect = 2.5e-180
Identity = 309/344 (89.83%), Postives = 313/344 (90.99%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTV 60
           MQVPSEGENALATVGPRPMEWSTVPYNAPQG GPNGKQR SSL+SPIMLLSGHQSAIYT+
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGHGPNGKQRRSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWN-----------------------------IVSASPDKT 120
           KFNPDGNVIASGSHDKEIFLWN                             IVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVRGDCKNFMVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVE+GKQIKKMAEHSSFVNSCCPTR+GPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVESGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 316
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of HG10015090 vs. NCBI nr
Match: XP_004135336.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 hypothetical protein Csa_008253 [Cucumis sativus])

HSP 1 Score: 639.8 bits (1649), Expect = 1.2e-179
Identity = 307/344 (89.24%), Postives = 311/344 (90.41%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTV 60
           MQVPSEGENALATVGPRPMEWSTVPYN PQGPGPN KQR SSL+SPIMLLSGHQSAIYT+
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWN-----------------------------IVSASPDKT 120
           KFNPDGNV+ASGSHDKEIFLWN                             IVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTR+GPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 316
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]

BLAST of HG10015090 vs. NCBI nr
Match: XP_022945717.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG6573599.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012682.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 634.4 bits (1635), Expect = 5.2e-178
Identity = 304/344 (88.37%), Postives = 310/344 (90.12%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTV 60
           MQVPS GENALATVGPRPMEWSTVPYNAPQGPGPNGKQR SSL+SPIMLL+GHQSAIYT+
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWN-----------------------------IVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWN                             IVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTR+GPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 316
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of HG10015090 vs. NCBI nr
Match: XP_022966914.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima])

HSP 1 Score: 634.4 bits (1635), Expect = 5.2e-178
Identity = 304/344 (88.37%), Postives = 310/344 (90.12%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTV 60
           MQVPS GENALATVGPRPMEWSTVPYNAPQGPGPNGKQR SSL+SPIMLL+GHQSAIYT+
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWN-----------------------------IVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWN                             IVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTR+GPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 316
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of HG10015090 vs. ExPASy Swiss-Prot
Match: Q96DI7 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 2.2e-107
Identity = 173/309 (55.99%), Postives = 227/309 (73.46%), Query Frame = 0


Query: 36  GKQRMSSLQSPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNI------------ 95
           G  R SSLQ+PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWN+            
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 107

Query: 96  -----------------VSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLI 155
                             SAS DKT+  WD ETG+++K++  H+SFVNSC P R+GP L+
Sbjct: 108 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSS 316
           LL+CSWS DGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

[Close]

BLAST of HG10015090 vs. ExPASy Swiss-Prot
Match: Q6PE01 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Snrnp40 PE=1 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 3.8e-107
Identity = 171/309 (55.34%), Postives = 227/309 (73.46%), Query Frame = 0


Query: 36  GKQRMSSLQSPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNI------------ 95
           G  R SSLQ+PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWN+            
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 96  -----------------VSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLI 155
                             SAS DKT+  WD ETG+++K++  H+SFVNSC P R+GP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ A+QTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 288

Query: 276 LLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSS 316
           LL+CSWS DGSK+ AGS+DR VY+WDTTSRR+LYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASS 348

[Close]

BLAST of HG10015090 vs. ExPASy Swiss-Prot
Match: Q2HJH6 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 5.0e-107
Identity = 172/309 (55.66%), Postives = 227/309 (73.46%), Query Frame = 0


Query: 36  GKQRMSSLQSPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNI------------ 95
           G  R SSLQ+PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWN+            
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 96  -----------------VSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLI 155
                             SAS DKT+  WD ETG+++K++  H+SFVNSC P R+GP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCV+IF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKN 288

Query: 276 LLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSS 316
           LL+CSWS DGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASS 348

[Close]

BLAST of HG10015090 vs. ExPASy Swiss-Prot
Match: Q5RF51 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 3.2e-106
Identity = 172/309 (55.66%), Postives = 226/309 (73.14%), Query Frame = 0


Query: 36  GKQRMSSLQSPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNI------------ 95
           G  R SSLQ+PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWN+            
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKG 107

Query: 96  -----------------VSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLI 155
                             SAS DKT+  WD ETG+++K++  H+SFVNSC P R+GP L+
Sbjct: 108 YSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSS 316
           LL+CSWS DGSK+ AGS+DR V +WDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

[Close]

BLAST of HG10015090 vs. ExPASy Swiss-Prot
Match: Q55AR8 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX=44689 GN=snrnp40 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.4e-93
Identity = 162/310 (52.26%), Postives = 206/310 (66.45%), Query Frame = 0


Query: 36  GKQRMSSLQSPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWN------------- 95
           G +R S L+ PIM L GH+  IY+ KFN  G  +ASG  DKEIFLWN             
Sbjct: 44  GTERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKG 103

Query: 96  ----------------IVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLI 155
                           I +A  DK++  WD   G+ IK++ EHS  VNSCCP R+GPPL+
Sbjct: 104 HKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLV 163

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGE- 215
            SGSDD +A+++D R +G+   F  KY +T+V FSDASD++ TGGIDN ++VWD+R  E 
Sbjct: 164 ASGSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQED 223

Query: 216 VMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEK 275
            + TL  HQD IT   +S DG+YLL+N MD    IWD+RPYAP NR +K F G Q+NFEK
Sbjct: 224 PLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEK 283

Query: 276 NLLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCS 316
           NL+K SWS DG ++  GSSDR VYIWDT ++++ Y LPGH+G+VNE  FHP+EPI+ASCS
Sbjct: 284 NLIKSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEPIIASCS 343

[Close]

BLAST of HG10015090 vs. ExPASy TrEMBL
Match: A0A5A7SYI1 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002400 PE=4 SV=1)

HSP 1 Score: 645.2 bits (1663), Expect = 1.4e-181
Identity = 310/344 (90.12%), Postives = 313/344 (90.99%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTV 60
           MQVPSEGENALATVGPRPMEWSTVPYN PQGPGPNGKQR SSL+SPIMLLSGHQSAIYT+
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWN-----------------------------IVSASPDKT 120
           KFNPDGNVIASGSHDKEIFLWN                             IVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTR+GPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 316
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of HG10015090 vs. ExPASy TrEMBL
Match: A0A1S3BDK5 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC103488871 PE=4 SV=1)

HSP 1 Score: 645.2 bits (1663), Expect = 1.4e-181
Identity = 310/344 (90.12%), Postives = 313/344 (90.99%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTV 60
           MQVPSEGENALATVGPRPMEWSTVPYN PQGPGPNGKQR SSL+SPIMLLSGHQSAIYT+
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWN-----------------------------IVSASPDKT 120
           KFNPDGNVIASGSHDKEIFLWN                             IVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTR+GPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 316
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of HG10015090 vs. ExPASy TrEMBL
Match: A0A0A0KTB1 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G588760 PE=4 SV=1)

HSP 1 Score: 639.8 bits (1649), Expect = 6.0e-180
Identity = 307/344 (89.24%), Postives = 311/344 (90.41%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTV 60
           MQVPSEGENALATVGPRPMEWSTVPYN PQGPGPN KQR SSL+SPIMLLSGHQSAIYT+
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWN-----------------------------IVSASPDKT 120
           KFNPDGNV+ASGSHDKEIFLWN                             IVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTR+GPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 316
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]

BLAST of HG10015090 vs. ExPASy TrEMBL
Match: A0A6J1HV60 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111466479 PE=4 SV=1)

HSP 1 Score: 634.4 bits (1635), Expect = 2.5e-178
Identity = 304/344 (88.37%), Postives = 310/344 (90.12%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTV 60
           MQVPS GENALATVGPRPMEWSTVPYNAPQGPGPNGKQR SSL+SPIMLL+GHQSAIYT+
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWN-----------------------------IVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWN                             IVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTR+GPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 316
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of HG10015090 vs. ExPASy TrEMBL
Match: A0A6J1G1Q0 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111449859 PE=4 SV=1)

HSP 1 Score: 634.4 bits (1635), Expect = 2.5e-178
Identity = 304/344 (88.37%), Postives = 310/344 (90.12%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTV 60
           MQVPS GENALATVGPRPMEWSTVPYNAPQGPGPNGKQR SSL+SPIMLL+GHQSAIYT+
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWN-----------------------------IVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWN                             IVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTR+GPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 316
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of HG10015090 vs. TAIR 10
Match: AT2G43770.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 572.0 bits (1473), Expect = 2.9e-163
Identity = 268/337 (79.53%), Postives = 288/337 (85.46%), Query Frame = 0


Query: 8   ENALATVGPRPMEWSTVPYNAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTVKFNPDGN 67
           EN  A  GPRPMEWSTVP++A QGPGPNGK R SSL++PIMLLSGH SA+YT+KFNP G 
Sbjct: 7   ENETALSGPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAVYTMKFNPAGT 66

Query: 68  VIASGSHDKEIFLW-----------------------------NIVSASPDKTLRAWDVE 127
           +IASGSHD+EIFLW                              IVSASPDKT+RAWDVE
Sbjct: 67  LIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVE 126

Query: 128 TGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 187
           TGKQIKKMAEHSSFVNSCCPTR+GPPLI+SGSDDGTAKLWDMRQRGAIQTFPDKYQITAV
Sbjct: 127 TGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 186

Query: 188 SFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKL 247
           SFSDA+DKIFTGG+DNDVKVWDLRKGE  MTL+GHQD ITGM LSPDGSYLLTNGMD KL
Sbjct: 187 SFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKL 246

Query: 248 CIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIWDTTSRRI 307
           C+WDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DG+KVTAGSSDRMV+IWDTTSRR 
Sbjct: 247 CVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWDTTSRRT 306

Query: 308 LYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 316
           +YKLPGHTGSVNECVFHP+EPI+ SCSSDK IYLGEI
Sbjct: 307 IYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI 343

[Close]

BLAST of HG10015090 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-34
Identity = 87/296 (29.39%), Postives = 142/296 (47.97%), Query Frame = 0


Query: 50  LSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWN--------------------------- 109
           L+ H  A+ +VKF+ DG ++AS S DK I  +                            
Sbjct: 20  LTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAF 79

Query: 110 ------IVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAK 169
                 IVSAS DKTL+ WDVETG  IK +  H+++   C        +IVSGS D T +
Sbjct: 80  SSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYA-FCVNFNPQSNMIVSGSFDETVR 139

Query: 170 LWDMRQRGAIQTFP-DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQ 229
           +WD+     ++  P     +TAV F+     I +   D   ++WD   G  + TL     
Sbjct: 140 IWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDEN 199

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSA 289
             ++ ++ SP+G ++L   +D  L +W++       + +K + GH  N +  +       
Sbjct: 200 PPVSFVRFSPNGKFILVGTLDNTLRLWNI----SSAKFLKTYTGHV-NAQYCISSAFSVT 259

Query: 290 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQI 311
           +G ++ +GS D  V++W+  S+++L KL GHT +V     HP+E ++AS S DK +
Sbjct: 260 NGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTV 309

[Close]

BLAST of HG10015090 vs. TAIR 10
Match: AT4G02730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-29
Identity = 92/321 (28.66%), Postives = 147/321 (45.79%), Query Frame = 0


Query: 27  NAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNIV-- 86
           N+    G +G   +      +  L GH +AI  VKF+ DGN++AS S DK + LW+    
Sbjct: 16  NSTGNAGTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNY 75

Query: 87  --------------------------SASPDKTLRAWDVETGKQ-IKKMAEHSSFVNSCC 146
                                     SAS D TLR WD  +  + +K +  H++FV  C 
Sbjct: 76  SLIHRYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFV-FCV 135

Query: 147 PTRKGPPLIVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIFTGGIDNDV 206
                  LIVSGS D T ++W+++    ++        I++V F+     I +   D   
Sbjct: 136 NFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSC 195

Query: 207 KVWDLRKGEVMMTL-QGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 266
           K+WD ++G  + TL       ++  + SP+G ++L   +D  L    +  YA   + +K+
Sbjct: 196 KIWDAKEGTCLKTLIDDKSPAVSFAKFSPNGKFILVATLDSTL---KLSNYA-TGKFLKV 255

Query: 267 FEGHQHNFEKNLLKCSWSA----DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNE 311
           + GH      N + C  SA    +G  + +GS D  VY+WD  +R IL +L GHT +V  
Sbjct: 256 YTGH-----TNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAVIS 315

[Close]

BLAST of HG10015090 vs. TAIR 10
Match: AT5G25150.1 (TBP-associated factor 5 )

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-23
Identity = 70/270 (25.93%), Postives = 116/270 (42.96%), Query Frame = 0


Query: 27  NAPQGPGPNGKQRMSSLQSPIMLLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWNI--- 86
           ++ Q  GPNG++  +       LL GH   +Y+  F+P G+ + S S D  I LW+    
Sbjct: 398 SSDQSIGPNGRRSYT-------LLLGHSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLN 457

Query: 87  --VSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDMR 146
             +          WD +        +    +  SC             S D TA++W M 
Sbjct: 458 ANLVCYKGHNYPVWDAQ-------FSPFGHYFASC-------------SHDRTARIWSMD 517

Query: 147 QRGAIQTFPDKY-QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGM 206
           +   ++        +  V +    + I TG  D  V++WD++ GE +    GH+ M+  +
Sbjct: 518 RIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSL 577

Query: 207 QLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVT 266
            +SPDG Y+ +   D  + +WD+       RC+    GH       +   S+S +GS + 
Sbjct: 578 AMSPDGRYMASGDEDGTIMMWDL----STARCITPLMGH----NSCVWSLSYSGEGSLLA 632

Query: 267 AGSSDRMVYIWDTTSRRILYKLPGHTGSVN 291
           +GS+D  V +WD TS   L K     G+ N
Sbjct: 638 SGSADCTVKLWDVTSSTKLTKAEEKNGNSN 632

[Close]

BLAST of HG10015090 vs. TAIR 10
Match: AT5G64730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-23
Identity = 75/295 (25.42%), Postives = 118/295 (40.00%), Query Frame = 0


Query: 49  LLSGHQSAIYTVKFNPDGNVIASGSHDKEIFLWN-------------------------- 108
           +L GH+ A+   +FN DGN   +   D+ I LWN                          
Sbjct: 13  ILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHGREVRDVHVTSDN 72

Query: 109 --IVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRKGPPLIVSGSDDGTAKLWDM 168
               S   D+ +  WDV TG+ I+K   H   VN+         ++VS   D + ++WD 
Sbjct: 73  AKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNA-VKFNDSSSVVVSAGFDRSLRVWDC 132

Query: 169 RQRGA-----IQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQD 228
           R         I TF D    T +S      +I  G +D  V+ +D+R G  M    G   
Sbjct: 133 RSHSVEPVQIIDTFLD----TVMSVVLTKTEIIGGSVDGTVRTFDMRIGREMSDNLGQP- 192

Query: 229 MITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSAD 288
            +  + +S DG+ +L   +D  L + D          +++++GH     K    C  +  
Sbjct: 193 -VNCISISNDGNCVLAGCLDSTLRLLD----RTTGELLQVYKGHISKSFKT--DCCLTNS 252

Query: 289 GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQI 311
            + V  GS D +V+ WD    ++L K   H   V    +HP E  + + S D  I
Sbjct: 253 DAHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPKEDCMLTSSVDGTI 294

The following BLAST results are available for this feature:

BLAST of HG10015090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446018.1	2.9e-181	90.12	PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA...	[more]
XP_038877892.1	2.5e-180	89.83	U5 small nuclear ribonucleoprotein 40 kDa protein [Benincasa hispida]	[more]
XP_004135336.1	1.2e-179	89.24	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 ...	[more]
XP_022945717.1	5.2e-178	88.37	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG65735...	[more]
XP_022966914.1	5.2e-178	88.37	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima]	[more]

BLAST of HG10015090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96DI7	2.2e-107	55.99	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNR...	[more]
Q6PE01	3.8e-107	55.34	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Sn...	[more]
Q2HJH6	5.0e-107	55.66	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP...	[more]
Q5RF51	3.2e-106	55.66	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNR...	[more]
Q55AR8	1.4e-93	52.26	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX...	[more]

BLAST of HG10015090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYI1	1.4e-181	90.12	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BDK5	1.4e-181	90.12	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KTB1	6.0e-180	89.24	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G...	[more]
A0A6J1HV60	2.5e-178	88.37	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1G1Q0	2.5e-178	88.37	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of HG10015090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43770.1	2.9e-163	79.53	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G49660.1	1.2e-34	29.39	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G02730.1	1.5e-29	28.66	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G25150.1	2.0e-23	25.93	TBP-associated factor 5	[more]
AT5G64730.1	3.5e-23	25.42	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 167..181 score: 33.43 coord: 126..140 score: 42.91 coord: 83..97 score: 38.69
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 183..222 e-value: 1.6E-8 score: 44.3 coord: 142..180 e-value: 3.2E-4 score: 30.0 coord: 275..314 e-value: 8.1E-5 score: 32.0 coord: 43..82 e-value: 1.5E-9 score: 47.7 coord: 99..139 e-value: 1.2E-7 score: 41.4 coord: 229..272 e-value: 1.3E-5 score: 34.7
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 278..312 e-value: 8.4E-4 score: 20.1 coord: 185..222 e-value: 6.4E-6 score: 26.8 coord: 155..180 e-value: 0.0079 score: 17.0 coord: 46..82 e-value: 1.8E-7 score: 31.7 coord: 231..272 e-value: 1.3E-5 score: 25.9 coord: 101..139 e-value: 3.4E-4 score: 21.4
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 50..91 score: 16.85791
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 251..281 score: 10.040596
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 106..148 score: 10.642123
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 155..189 score: 12.580379
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 190..224 score: 13.516088
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 282..315 score: 9.773251
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 42..315 e-value: 3.1E-107 score: 359.8
None	No IPR available	PANTHER	PTHR44006:SF1	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	coord: 83..315
None	No IPR available	PANTHER	PTHR44006:SF1	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	coord: 30..83
None	No IPR available	PANTHER	PTHR44006	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	coord: 83..315
None	No IPR available	PANTHER	PTHR44006	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	coord: 30..83
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 148..185 score: 9.151057
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 50..83 score: 13.421944
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 190..224 score: 11.207411
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 282..315 score: 9.572873
None	No IPR available	CDD	cd00200	WD40	coord: 50..312 e-value: 1.15265E-66 score: 208.728
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 259..273
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 69..83
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 126..140
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 167..181
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 47..312

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015090.1	HG10015090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071013	catalytic step 2 spliceosome
molecular_function	GO:0005515	protein binding