HG10015012 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015012
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr02: 22954391 .. 22954567 (+)
RNA-Seq Expression	HG10015012
Synteny	HG10015012

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGGTGAGCGGGAAGAGGAAGATGATCAGGAGCTTCTTCCGCCGCGTGAGGGCGGAGATCCGGCGGCAGATGGCGGCAGGGTCCCACAGGAAGAGGCGCCTCAGTTTCCACTATGACCCTTTCAGTTATGCTTTGAACTTTGACAATGGCAATTTTGGCTTCTTTGGTTGA

mRNA sequence

ATGGCGGTGGTGAGCGGGAAGAGGAAGATGATCAGGAGCTTCTTCCGCCGCGTGAGGGCGGAGATCCGGCGGCAGATGGCGGCAGGGTCCCACAGGAAGAGGCGCCTCAGTTTCCACTATGACCCTTTCAGTTATGCTTTGAACTTTGACAATGGCAATTTTGGCTTCTTTGGTTGA

Coding sequence (CDS)

ATGGCGGTGGTGAGCGGGAAGAGGAAGATGATCAGGAGCTTCTTCCGCCGCGTGAGGGCGGAGATCCGGCGGCAGATGGCGGCAGGGTCCCACAGGAAGAGGCGCCTCAGTTTCCACTATGACCCTTTCAGTTATGCTTTGAACTTTGACAATGGCAATTTTGGCTTCTTTGGTTGA

Protein sequence

MAVVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGFFG

Homology

[Close]

BLAST of HG10015012 vs. NCBI nr
Match: KAG5221957.1 (hypothetical protein IMY05_C4078000200 [Salix suchowensis])

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 3  VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGFF 58
          V+SGKRK +RS F RVRAEIRRQ+   S  K+RLSFHYDPFSYALNFD+GNFGFF
Sbjct: 14 VLSGKRK-LRSLFWRVRAEIRRQV-KNSKSKQRLSFHYDPFSYALNFDDGNFGFF 66

[Close]

BLAST of HG10015012 vs. NCBI nr
Match: KAG5241003.1 (pyruvate carboxylase [Salix suchowensis])

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 3   VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGFF 58
           V+SGKRK +RS F RVRAEIRRQ+   S  K+RLSFHYDPFSYALNFD+GNFGFF
Sbjct: 51  VLSGKRK-LRSLFWRVRAEIRRQV-KNSKSKQRLSFHYDPFSYALNFDDGNFGFF 103

[Close]

BLAST of HG10015012 vs. NCBI nr
Match: KJB31878.1 (hypothetical protein B456_005G213500 [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1  MAVVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGFF 58
          +AV+ GKRK +RS F +VRAEIRRQM   +  K   SFHYDPFSYALNFDNGNFGFF
Sbjct: 12 VAVMQGKRK-LRSMFLKVRAEIRRQMKVRT-SKHEFSFHYDPFSYALNFDNGNFGFF 66

[Close]

BLAST of HG10015012 vs. NCBI nr
Match: OMO62307.1 (hypothetical protein COLO4_33132 [Corchorus olitorius])

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 3  VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGF 57
          V+ GKRK  RS F R+RAEIRRQM A    K++ SF YDPFSYALNFDNGNFGF
Sbjct: 14 VLCGKRK-FRSLFWRIRAEIRRQMKAARTSKQKFSFQYDPFSYALNFDNGNFGF 66

[Close]

BLAST of HG10015012 vs. NCBI nr
Match: OMO98223.1 (hypothetical protein CCACVL1_04290 [Corchorus capsularis])

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 3  VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGF 57
          V+ GKRK  RS F R+RAEIRRQM A    K++ SF YDPFSYALNFDNGNFGF
Sbjct: 14 VMCGKRK-FRSLFWRIRAEIRRQMKAARTSKQKFSFQYDPFSYALNFDNGNFGF 66

[Close]

BLAST of HG10015012 vs. ExPASy TrEMBL
Match: A0A6N2LDV4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS205226 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-10
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 3  VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGFF 58
          V+SGKRK +RS F RVRAEIRRQ+   S  K+RLSFHYDPFSYALNFD+GNFGFF
Sbjct: 14 VLSGKRK-LRSLFWRVRAEIRRQV-KNSKSKQRLSFHYDPFSYALNFDDGNFGFF 66

[Close]

BLAST of HG10015012 vs. ExPASy TrEMBL
Match: A0A0D2PX18 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G213500 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-10
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1  MAVVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGFF 58
          +AV+ GKRK +RS F +VRAEIRRQM   +  K   SFHYDPFSYALNFDNGNFGFF
Sbjct: 12 VAVMQGKRK-LRSMFLKVRAEIRRQMKVRT-SKHEFSFHYDPFSYALNFDNGNFGFF 66

[Close]

BLAST of HG10015012 vs. ExPASy TrEMBL
Match: A0A1R3JTM5 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04290 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 3  VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGF 57
          V+ GKRK  RS F R+RAEIRRQM A    K++ SF YDPFSYALNFDNGNFGF
Sbjct: 14 VMCGKRK-FRSLFWRIRAEIRRQMKAARTSKQKFSFQYDPFSYALNFDNGNFGF 66

[Close]

BLAST of HG10015012 vs. ExPASy TrEMBL
Match: A0A1R3GW93 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33132 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 3  VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGF 57
          V+ GKRK  RS F R+RAEIRRQM A    K++ SF YDPFSYALNFDNGNFGF
Sbjct: 14 VLCGKRK-FRSLFWRIRAEIRRQMKAARTSKQKFSFQYDPFSYALNFDNGNFGF 66

[Close]

BLAST of HG10015012 vs. ExPASy TrEMBL
Match: A0A061E9R3 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007661 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1  MAVVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGF 57
          + V+ GKRK  RS F RVRAEIRRQ+ A +  K+R SFHYDPFSYALNFDNGNFGF
Sbjct: 35 VVVLCGKRK-FRSLFWRVRAEIRRQVKART-SKQRFSFHYDPFSYALNFDNGNFGF 88

The following BLAST results are available for this feature:

BLAST of HG10015012 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5221957.1	2.9e-10	76.36	hypothetical protein IMY05_C4078000200 [Salix suchowensis]	[more]
KAG5241003.1	2.9e-10	76.36	pyruvate carboxylase [Salix suchowensis]	[more]
KJB31878.1	1.1e-09	70.18	hypothetical protein B456_005G213500 [Gossypium raimondii]	[more]
OMO62307.1	2.5e-09	70.37	hypothetical protein COLO4_33132 [Corchorus olitorius]	[more]
OMO98223.1	2.5e-09	70.37	hypothetical protein CCACVL1_04290 [Corchorus capsularis]	[more]

BLAST of HG10015012 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10015012 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2LDV4	1.4e-10	76.36	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS205226 PE=4 SV=...	[more]
A0A0D2PX18	5.4e-10	70.18	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G213500 PE=4 ...	[more]
A0A1R3JTM5	1.2e-09	70.37	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04290 PE=4 ...	[more]
A0A1R3GW93	1.2e-09	70.37	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33132 PE=4 SV=1	[more]
A0A061E9R3	1.6e-09	71.43	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007661 PE=4 SV=1	[more]

BLAST of HG10015012 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34538:SF13	OS07G0573000 PROTEIN	coord: 7..57
None	No IPR available	PANTHER	PTHR34538	EXPRESSED PROTEIN	coord: 7..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015012.1	HG10015012.1	mRNA