HG10015012 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10015012
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr02: 22954391 .. 22954567 (+)
RNA-Seq ExpressionHG10015012
SyntenyHG10015012
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTGGTGAGCGGGAAGAGGAAGATGATCAGGAGCTTCTTCCGCCGCGTGAGGGCGGAGATCCGGCGGCAGATGGCGGCAGGGTCCCACAGGAAGAGGCGCCTCAGTTTCCACTATGACCCTTTCAGTTATGCTTTGAACTTTGACAATGGCAATTTTGGCTTCTTTGGTTGA

mRNA sequence

ATGGCGGTGGTGAGCGGGAAGAGGAAGATGATCAGGAGCTTCTTCCGCCGCGTGAGGGCGGAGATCCGGCGGCAGATGGCGGCAGGGTCCCACAGGAAGAGGCGCCTCAGTTTCCACTATGACCCTTTCAGTTATGCTTTGAACTTTGACAATGGCAATTTTGGCTTCTTTGGTTGA

Coding sequence (CDS)

ATGGCGGTGGTGAGCGGGAAGAGGAAGATGATCAGGAGCTTCTTCCGCCGCGTGAGGGCGGAGATCCGGCGGCAGATGGCGGCAGGGTCCCACAGGAAGAGGCGCCTCAGTTTCCACTATGACCCTTTCAGTTATGCTTTGAACTTTGACAATGGCAATTTTGGCTTCTTTGGTTGA

Protein sequence

MAVVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGFFG
Homology
BLAST of HG10015012 vs. NCBI nr
Match: KAG5221957.1 (hypothetical protein IMY05_C4078000200 [Salix suchowensis])

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 3  VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGFF 58
          V+SGKRK +RS F RVRAEIRRQ+   S  K+RLSFHYDPFSYALNFD+GNFGFF
Sbjct: 14 VLSGKRK-LRSLFWRVRAEIRRQV-KNSKSKQRLSFHYDPFSYALNFDDGNFGFF 66

BLAST of HG10015012 vs. NCBI nr
Match: KAG5241003.1 (pyruvate carboxylase [Salix suchowensis])

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 3   VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGFF 58
           V+SGKRK +RS F RVRAEIRRQ+   S  K+RLSFHYDPFSYALNFD+GNFGFF
Sbjct: 51  VLSGKRK-LRSLFWRVRAEIRRQV-KNSKSKQRLSFHYDPFSYALNFDDGNFGFF 103

BLAST of HG10015012 vs. NCBI nr
Match: KJB31878.1 (hypothetical protein B456_005G213500 [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 1  MAVVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGFF 58
          +AV+ GKRK +RS F +VRAEIRRQM   +  K   SFHYDPFSYALNFDNGNFGFF
Sbjct: 12 VAVMQGKRK-LRSMFLKVRAEIRRQMKVRT-SKHEFSFHYDPFSYALNFDNGNFGFF 66

BLAST of HG10015012 vs. NCBI nr
Match: OMO62307.1 (hypothetical protein COLO4_33132 [Corchorus olitorius])

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 3  VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGF 57
          V+ GKRK  RS F R+RAEIRRQM A    K++ SF YDPFSYALNFDNGNFGF
Sbjct: 14 VLCGKRK-FRSLFWRIRAEIRRQMKAARTSKQKFSFQYDPFSYALNFDNGNFGF 66

BLAST of HG10015012 vs. NCBI nr
Match: OMO98223.1 (hypothetical protein CCACVL1_04290 [Corchorus capsularis])

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 3  VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGF 57
          V+ GKRK  RS F R+RAEIRRQM A    K++ SF YDPFSYALNFDNGNFGF
Sbjct: 14 VMCGKRK-FRSLFWRIRAEIRRQMKAARTSKQKFSFQYDPFSYALNFDNGNFGF 66

BLAST of HG10015012 vs. ExPASy TrEMBL
Match: A0A6N2LDV4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS205226 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-10
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 3  VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGFF 58
          V+SGKRK +RS F RVRAEIRRQ+   S  K+RLSFHYDPFSYALNFD+GNFGFF
Sbjct: 14 VLSGKRK-LRSLFWRVRAEIRRQV-KNSKSKQRLSFHYDPFSYALNFDDGNFGFF 66

BLAST of HG10015012 vs. ExPASy TrEMBL
Match: A0A0D2PX18 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G213500 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-10
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 1  MAVVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGFF 58
          +AV+ GKRK +RS F +VRAEIRRQM   +  K   SFHYDPFSYALNFDNGNFGFF
Sbjct: 12 VAVMQGKRK-LRSMFLKVRAEIRRQMKVRT-SKHEFSFHYDPFSYALNFDNGNFGFF 66

BLAST of HG10015012 vs. ExPASy TrEMBL
Match: A0A1R3JTM5 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04290 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 3  VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGF 57
          V+ GKRK  RS F R+RAEIRRQM A    K++ SF YDPFSYALNFDNGNFGF
Sbjct: 14 VMCGKRK-FRSLFWRIRAEIRRQMKAARTSKQKFSFQYDPFSYALNFDNGNFGF 66

BLAST of HG10015012 vs. ExPASy TrEMBL
Match: A0A1R3GW93 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33132 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 3  VVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGF 57
          V+ GKRK  RS F R+RAEIRRQM A    K++ SF YDPFSYALNFDNGNFGF
Sbjct: 14 VLCGKRK-FRSLFWRIRAEIRRQMKAARTSKQKFSFQYDPFSYALNFDNGNFGF 66

BLAST of HG10015012 vs. ExPASy TrEMBL
Match: A0A061E9R3 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007661 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1  MAVVSGKRKMIRSFFRRVRAEIRRQMAAGSHRKRRLSFHYDPFSYALNFDNGNFGF 57
          + V+ GKRK  RS F RVRAEIRRQ+ A +  K+R SFHYDPFSYALNFDNGNFGF
Sbjct: 35 VVVLCGKRK-FRSLFWRVRAEIRRQVKART-SKQRFSFHYDPFSYALNFDNGNFGF 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG5221957.12.9e-1076.36hypothetical protein IMY05_C4078000200 [Salix suchowensis][more]
KAG5241003.12.9e-1076.36pyruvate carboxylase [Salix suchowensis][more]
KJB31878.11.1e-0970.18hypothetical protein B456_005G213500 [Gossypium raimondii][more]
OMO62307.12.5e-0970.37hypothetical protein COLO4_33132 [Corchorus olitorius][more]
OMO98223.12.5e-0970.37hypothetical protein CCACVL1_04290 [Corchorus capsularis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6N2LDV41.4e-1076.36Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS205226 PE=4 SV=... [more]
A0A0D2PX185.4e-1070.18Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G213500 PE=4 ... [more]
A0A1R3JTM51.2e-0970.37Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04290 PE=4 ... [more]
A0A1R3GW931.2e-0970.37Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33132 PE=4 SV=1[more]
A0A061E9R31.6e-0971.43Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007661 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34538:SF13OS07G0573000 PROTEINcoord: 7..57
NoneNo IPR availablePANTHERPTHR34538EXPRESSED PROTEINcoord: 7..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10015012.1HG10015012.1mRNA