HG10014928 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10014928
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr02: 21908578 .. 21910871 (-)
RNA-Seq ExpressionHG10014928
SyntenyHG10014928
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCCTCTTCTTCTTCAGCTGCACCAACCAATTATTACACATGTTGTGGTTCTAATTTCACTGCTACATTTGGTACACAGTGTCCCAAATGCTTCAAAGCTATGGCTGACCCTGCAACATATGTTTATGGATCTGGGGAATCTAAGCCCTTTGAAGAAGGATTATCAGATTATGTGAAAGGGGGAATAATTAGGTATATGGTGATGGATGATCTTACCGTCAAACTGCAAGCCAAACAACCTAGAAAATCATTTAAATCATTAGAGAAAATTTCATCACTGCTAGAATTAATTTATAGTGATGTTTGTGATGACAACAACACTCGGACTCGTGATGAAAAAAAGATAACATTTGTAGATGACTGTTCAAAATACTTTTATATTTATTTACTTAACTCCATGAAGTATTTAATACTCTTAAAATCAATAAAGTTGAGGTAGAAAATGAGTTGGAAAAAGAAAATTAAAGTTTTAAAGGTATGATAGGGGTGGTGATACTGTTTAGATGAAATAGATAGTTTGTGTTACACTCTATCTCAAGTTACCCTACCAAATTTCAGACGTGGCATGATGACAATAGATTCCAATTAAGATTGACAATAGATTCCAATTAAGATTATGAAATCCGTTGTCAAACTCTAAAAACATTTTCGACGAAAAATTCCATAAAATCATACCACCATCGAAAAGAGTATTTTTGACAAAAAAAAATCCCATAAAATCTTATATTTGAAAATAACAATATATTTAAACATTTATGAAAATAAGTTTTGAAAAGGGATTAGATTAATCGAAATGTTTTCAAATATATAAAAATGAGTTAAACTATTTACGAATATAGAAAAATTTTACAGTCTATGATCGCGATAGAATTCTATCACAGTCTATCGCTCAAGCAAATAAATTCTATTGCTTGAGCGATAGTAAGTGATATAATTCTATCGCGGTTTATCACTAATAGACCGTAAAATTTTTCTATATTTTTTTTCTTCTGTTTATGATAATTTCTCTAGATTAATCCCTTTTATTCTTAGGTGGGTTAATGAAAATAACAACTAATTAATGCAAACATATTTCTACCTACGGTCTGCATTTTAGTTTTTGGTATTTCTAAGTTCCTCTTTTGTTTCCATCGTATTTATATTTTATTTTATTTTCCCAAAAAAGTGTTGTTGGTTTTTAGGTGGGTTACTTATATTTCATGTTGATTCTGTTAACTAATTGGATTTGATTGGGATTTATTTTCGGGTGTATTGCTTTATTTTCGGTTGATTTGAATTTTTTTTAATTAGATTATGTGCTAAAATATTGTGTAATTTTATTGATGTTGGGGAAGGGTATATTCGTCTGTTTTTTTTAATAAATACCATGTAATTTATTAGTTTAGACAATTTTCCGAATTTCCATTTAAATTTACAGTGTACTCAGATCGACACAACATCGTTGTGAGTACCTTCATGTAGGTTAGCTCCAATGACATATCTAAACTGAAGGAGTAGGTCGGAGGAGTATAAGAGACTCGCGTGCAAGTTTTCCGTATCAACAATTATTATAGTCCATGAAGCCAACATGGGACATGTGTGCCTTAACACGATCACCTCATGTCTCCTTTGATGTCAACCCTCTTATATATACATCATTATAACTCATTTTTCACTCTTTATATATTTCTTTCATTCCTGTCATTTCTTTTACCTATTAAATGTCCAATTTTAATCTTTATATTTTCATATACTTAAAAAGAATCTTTCCTATTAGTTTATGGTTGTTTTTAGAAAACAATGTAATTAAATTTGAATGAACAAAGAAAAATTATACATATTATTGAAATGCAGTTCCGATGAGATGTACTTTGAGCTTTCCCTAAAATCAAAGTTTTAGGGTCGTTTGGCCTACTAATTTCTTAAGTTGGAACTCAAATGGAAGTTTGCACATTTATGGAGTAATTTCGTCATCCCATTTTTTTCTACTCTTCACATTTATAGAGAAATTTTATCTACATATTTATCTCAAATTTTCACATTTTTTTCCCGGATGGGATCTCCTCTCTCGTTAATGAGGATAAGTGCATTCCTACTTTGGTGGTTGACTTTTATTGAATTTCTTTTTTTCCTCAGAAAAAAAGAAGGAAATAAAGTTGATAAGAAAACAACGAAAGGAGAATCTGCAGAAAATCTGCCCATAAATTACCACAAAATCTGGTCATTAGTTACACTTACAGATTGGAGAGAGATGAAAAGGGAAAGAAAATGACGGTTGTGTCCAGAAAAGAGCATGCTGTAATGTATTGA

mRNA sequence

ATGGAACCCTCTTCTTCTTCAGCTGCACCAACCAATTATTACACATGTTGTGGTTCTAATTTCACTGCTACATTTGGTACACAGTGTCCCAAATGCTTCAAAGCTATGGCTGACCCTGCAACATATGTTTATGGATCTGGGGAATCTAAGCCCTTTGAAGAAGGATTATCAGATTATGTGAAAGGGGGAATAATTAGATTGGAGAGAGATGAAAAGGGAAAGAAAATGACGGTTGTGTCCAGAAAAGAGCATGCTGTAATGTATTGA

Coding sequence (CDS)

ATGGAACCCTCTTCTTCTTCAGCTGCACCAACCAATTATTACACATGTTGTGGTTCTAATTTCACTGCTACATTTGGTACACAGTGTCCCAAATGCTTCAAAGCTATGGCTGACCCTGCAACATATGTTTATGGATCTGGGGAATCTAAGCCCTTTGAAGAAGGATTATCAGATTATGTGAAAGGGGGAATAATTAGATTGGAGAGAGATGAAAAGGGAAAGAAAATGACGGTTGTGTCCAGAAAAGAGCATGCTGTAATGTATTGA

Protein sequence

MEPSSSSAAPTNYYTCCGSNFTATFGTQCPKCFKAMADPATYVYGSGESKPFEEGLSDYVKGGIIRLERDEKGKKMTVVSRKEHAVMY
Homology
[Close]
BLAST of HG10014928 vs. NCBI nr
Match: XP_008461633.1 (PREDICTED: uncharacterized protein LOC103500190 isoform X1 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 6.4e-17
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 0 

Query: 1   MEPSSSSAAPTNYYTCCGSNFTATFGTQCPKCFKAMADPATYVYGSGESKPFEEGLSDYV 60
           +E SSS A PTNYYTCCGS FT+T  TQCPKCFK+M +PATYVYG GE KPFE GL  YV
Sbjct: 106 IESSSSLAPPTNYYTCCGSYFTSTVHTQCPKCFKSMVEPATYVYGLGELKPFEGGLG-YV 165

Query: 61  KGGIIRLERDE 72
           +GG+  +  D+
Sbjct: 166 EGGVRYMVMDD 175

[Close]
BLAST of HG10014928 vs. NCBI nr
Match: XP_008461634.1 (PREDICTED: uncharacterized protein LOC103500190 isoform X2 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 6.4e-17
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 0 

Query: 1   MEPSSSSAAPTNYYTCCGSNFTATFGTQCPKCFKAMADPATYVYGSGESKPFEEGLSDYV 60
           +E SSS A PTNYYTCCGS FT+T  TQCPKCFK+M +PATYVYG GE KPFE GL  YV
Sbjct: 106 IESSSSLAPPTNYYTCCGSYFTSTVHTQCPKCFKSMVEPATYVYGLGELKPFEGGLG-YV 165

Query: 61  KGGIIRLERDE 72
           +GG+  +  D+
Sbjct: 166 EGGVRYMVMDD 175

[Close]
BLAST of HG10014928 vs. NCBI nr
Match: XP_022957060.1 (uncharacterized protein LOC111458549 [Cucurbita moschata] >KAG6601016.1 hypothetical protein SDJN03_06249, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-05
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 7   SAAPTNYYTC-----CGSNFTATFGTQCPKCFKAMADPATYVYGSGESKPFEEGLSDYVK 66
           S+ P  YYTC     C  +F+AT+  QCPKC   MA PA+YVY   E++P    + D++K
Sbjct: 106 SSGPKTYYTCSNTTHCCYSFSATYNIQCPKCHCKMASPASYVYEPNEARPI---VGDFLK 165

[Close]
BLAST of HG10014928 vs. NCBI nr
Match: KAG7031628.1 (hypothetical protein SDJN02_05669, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 0 

Query: 7   SAAPTNYYTC-----CGSNFTATFGTQCPKCFKAMADPATYVYGSGESKPFEEGLSDYVK 66
           S+ P  YYTC     C  +F+AT+  QCPKC   M  PA+YVY   E++P    + D++K
Sbjct: 106 SSGPKTYYTCSNTTHCCYSFSATYNIQCPKCHCKMGSPASYVYEPNEARPI---VGDFLK 165

[Close]
BLAST of HG10014928 vs. ExPASy TrEMBL
Match: A0A1S3CF25 (uncharacterized protein LOC103500190 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500190 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.1e-17
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 0 

Query: 1   MEPSSSSAAPTNYYTCCGSNFTATFGTQCPKCFKAMADPATYVYGSGESKPFEEGLSDYV 60
           +E SSS A PTNYYTCCGS FT+T  TQCPKCFK+M +PATYVYG GE KPFE GL  YV
Sbjct: 106 IESSSSLAPPTNYYTCCGSYFTSTVHTQCPKCFKSMVEPATYVYGLGELKPFEGGLG-YV 165

Query: 61  KGGIIRLERDE 72
           +GG+  +  D+
Sbjct: 166 EGGVRYMVMDD 175

[Close]
BLAST of HG10014928 vs. ExPASy TrEMBL
Match: A0A1S3CF63 (uncharacterized protein LOC103500190 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500190 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.1e-17
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 0 

Query: 1   MEPSSSSAAPTNYYTCCGSNFTATFGTQCPKCFKAMADPATYVYGSGESKPFEEGLSDYV 60
           +E SSS A PTNYYTCCGS FT+T  TQCPKCFK+M +PATYVYG GE KPFE GL  YV
Sbjct: 106 IESSSSLAPPTNYYTCCGSYFTSTVHTQCPKCFKSMVEPATYVYGLGELKPFEGGLG-YV 165

Query: 61  KGGIIRLERDE 72
           +GG+  +  D+
Sbjct: 166 EGGVRYMVMDD 175

[Close]
BLAST of HG10014928 vs. ExPASy TrEMBL
Match: A0A6J1GZH1 (uncharacterized protein LOC111458549 OS=Cucurbita moschata OX=3662 GN=LOC111458549 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.7e-05
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 7   SAAPTNYYTC-----CGSNFTATFGTQCPKCFKAMADPATYVYGSGESKPFEEGLSDYVK 66
           S+ P  YYTC     C  +F+AT+  QCPKC   MA PA+YVY   E++P    + D++K
Sbjct: 106 SSGPKTYYTCSNTTHCCYSFSATYNIQCPKCHCKMASPASYVYEPNEARPI---VGDFLK 165

The following BLAST results are available for this feature:
BLAST of HG10014928 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461633.16.4e-1766.20PREDICTED: uncharacterized protein LOC103500190 isoform X1 [Cucumis melo][more]
XP_008461634.16.4e-1766.20PREDICTED: uncharacterized protein LOC103500190 isoform X2 [Cucumis melo][more]
XP_022957060.15.6e-0543.75uncharacterized protein LOC111458549 [Cucurbita moschata] >KAG6601016.1 hypothet... [more]
KAG7031628.11.6e-0442.19hypothetical protein SDJN02_05669, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of HG10014928 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10014928 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CF253.1e-1766.20uncharacterized protein LOC103500190 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3CF633.1e-1766.20uncharacterized protein LOC103500190 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1GZH12.7e-0543.75uncharacterized protein LOC111458549 OS=Cucurbita moschata OX=3662 GN=LOC1114585... [more]
BLAST of HG10014928 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10014928.1HG10014928.1mRNA