HG10014910 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014910
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	serine/arginine-rich SC35-like splicing factor SCL30
Location	Chr02: 21709828 .. 21713983 (+)
RNA-Seq Expression	HG10014910
Synteny	HG10014910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGATACAGTCCACCATACCATAGTCCTCCAAGAAGAGGATACGGTGGTCGTGGAAGAAGCCCCCCGGGTAGGGGTTATGGTGGTGGTGGAGGTGGAGGTGGCGGCGGGTATGGAAGACGAAGGGAACAACCTCATGGTAGCCTTCTGGTTAGAAATATTCCTATGGATTGCAGGTCAGGATTTCACCGCTTTTTTCTACTACTATTCTAATTGATGAATTTGTTGTTTTCTCTCACTGCATTTTAAGAACTTGGCTTCTGGTTGTATTGGTACATTTAGGCCAGAGGAGCTTAGAGCGCCATTTGAGAGGTTTGGACTTGTTCGAGATGTGTATATTCCAAAGGACTATTACACAGGGTGAGCATCTTGTGTTTATTTTTCTTATTTATTTTTCACACCACTCCATCCATGGTATGTGTTGGATTTATTAAACTGTTATTCCACCTGATTCTTGTGTGTTTTTATATGGTTAATATCTGAACTTCTGACCTCCAATTTGCATCAAGTTTTAATCAAATTAACCTCAAACAGGGTTCGGGTGGTAATTTTAGGTTTACTTGTTAAGCATTCAGCCAAGCCTTTTGCGTTAGAAATTGAGCCTGAGTACTTTCTCTTGTTTGATGCTCTCAGCCGTGTGCTAAGCTTCTTATTTAAGGCAATTATGATCATAGTCAAAATGTATAGAGCACATGTAAAGCTTTTCACTTTTGCATTTCAAGATTCTATTTTCAGAACAATTTTCTTTTTCTTCTTTGTGGAAAGAACTCTCATGTGCCTACATACGCAAGATGATATAAACTCTTAAGCAACTGTGGGGGGACTCTTTTACAACTATTTTTTAACTTGATCAATTCTTGAGGGTGTACGAATGTGCACTGAGTTCTAATTTTTTTAGACAAAATTTTTAGATCGTATGGAACATCCAGTTGAGTTTGTTATTCGTAGTCAGGGAATGAAGAGGATGAACAATGTCAAATGAAATTTCACCGGACCTTATTTTTTCTGGATGGATCTTATTCCCATTTCATAGTGTGTTTTGAACTGCTTTGTCAGGGGGTATATTGGTTTGAACTTTGAAGTTAAAACAAGCCCAAGCCCCTATTAATGAGGGTCTACTACCTTTCACTGCCTAACATATATCTCATCAAGAATGTAAAGAATAATATCGAAATGAGGGTGTCTCTCTCTGAGGAGATATTAGATAACTACACCCATCAATAGAAGTTGATGAGGAAGAAGGTAGATTCTTGAGCAATTGAAGCCAACAAGTTGAAGGTTTTAAAGTTGTGGAATGTTTGTTCAAGTGCTTCATGTCCCAAGTGTTTGAAGAATTTTCAAGTCACGAATTTTTGGTTTCAAGTATTTATATCAAGAAATGTGAAGTTGATGAGGAAGAAGGTATATTCTTGAGCAATTGAAGCCAACAACGTGAAGGTTTTAAGGTTGTGGAATGTTTGTTCAAGTGCTTCATGTGTTCCAAGTGTGTGAAGAGTTTTCAAGTCATGAATTGTTGGTTACTTATATCAAGAAATGTGAAGAATTTTCAAGTCAAGTTACGTTGAATTGAAGTGCTTATAGTTACAAGAATATGAAGATTTTTCAAGTCACTTGCCTCTTTCATGCTTGATTGTAAAGATAAGGTTAGCTACTAAACTTTGAAATTAGCTGTGCTTTATGTAACTCCGGCCAAAGCTTTGAAGAAAGCAGTCTGAAGTTAATATTGGATATGAAAAGAAAGCTATTTAGTTTATGGAATCCCAAATCCTTTTACCATGAAAAAGTATATTAATGTAATCATTCAATCTAGTTACCCAAGATTTGTGTCCAGAAATGCGTTTCTTATTTTTATCACTTTTTTCTTTTGAATTCTTTGTAGTGATCCTCGAGGATTTGCGTTTGTGGAGTTTGTTGATCCTTATGAGGCTTCTGAAGCTCAGTACCATATGAATGGGAAAAAATTTGCTGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGGCAAAGGAGTAGAAGGTAGTTGTTTATTCTCTTTTTCCACTTTTTCTCAATGGTTTCAAGGGACTGCAAATTTACAATCCACACCCCCTTGCATCTGCTTTCAAGTTTAAGTTGCATGCCTGCTTGCTTGAGCCTTGAAGTATATTTATTCTTGTTCATCGGGTAAAAAATGTCACCTTTTTCTGCATTGTTACTGACCTGCAAGCAATCTACCTTATTCTGAGAGGAGGAGGGGAGGGATCAAAAGCAACCTAAAACTCTCAGCTCTTTTCTTTCACTGTGTTCAATGGCCAACAGCCTTTTATGATGATTTTTTAGTTGCAAGTTGCATGTTTTTTTTAATTACTATTCTTTTTTTCCTCTTTGTAGGGGACCATCTGGCTATGGTGGACGCCGTTCTCATTATGGTATGGTACAATTAGTCTCTCTTCAAATTTTACGAATCTTAACTTAAATAACTTTTATACTTAAGTGAAAACCCCAACATAAAAAAGTGAGAATAGTTCATGTTACTTCTGCTTCTTGACTGTTAAAGAAGTCTATAGCATAAGAAGTCTATAGCATTATGTATGGTTGTTCCCCTACAATGTACCTGCAAAGCTTAGTAAAGAGCACAACATAGCAATTCCAAGGGCAATAGCACTGTTCTATTGATAGGAAAAGGTCGAAGACACCAGATTACTAGAATACAACAGAACTTAAAGATAAAGAAAACAGAAAGATAACATCCAGGTACAACCAAGAGAGCTGTTTCTCTCCTACCCAAGCCTCCAGCCACAAAATACCACAATGAGGCTCTTCCTTCCCCCCAAACCCCACATAATCAACCTTGCCCTTCACAAACAAACCAGGCATGTCCCACTAACCCACAAACTAACCGCCAGTGTTTGAATTACCTGATTTTGCCCCTTCTAGAATATGTCTTCACATTGGTGGGCCTTACACATTATTACTTGTTATGGAACTCTTGGACATCACAGCTTGAAGCAGTAGTATATGGGAATTATTTCTAAGATGTTAGATTGCATGAGTATTCTTATTTGACTTTTCTTGAGACTTAAGATTGGTGTATTTATATACCTACCAATGCAACCGAGCTTATTTATAAGCTCTAAGTTAAGTGGTCATATAATATCCTTCTTTAAGATTGGTATATTTATATACCTACCACAAGCTTATTTAGAAGCTTTTAGTTAAATGGTCATCTATATCATTTAGATGGACTTTTTATTTTATTTTTTATGTAATGAGCTGAGAAGTTTCACACATGTCACACACAGACAGATAAATTATGGTATTTGATTGGTCGTTTTACTTGATTTTTCTTTCCTTAGTTTGATGCTTTTGTTAGGAGATACTGCCTCCAAGGCTCTAAACCTCTTGTTTCCACATGTAGCTTCTTTTATTAGGTTCAAATATAAGCATATAATATTTCTTTTTGGGTTAGTTGGGTTCCTAAGTGAGTGTGTTTGTGTTAAATTAGCATAATGACAGCTCTTTTGTTATGAAATTTTGAATGTGCGGTCTTGCAGGATTTGTTGATTGATTAAATTAAAAATACAAACCTCTTCTGTACATTTTATTTGTTTGTGGCATTGTAGTTTTCAGTTTGTTACTAAATTTCAAATATGCATACAAAAGCTTGGAATCAAATCAATCATTAACTATTGTACTAGACAAAATATGTCCATATTGGATTTTTGTATTCAATGATCAACCTGGGCAGTAGTTATCGCTTGATTTATTTATTATTTTTTTTTTGTGTACAATATAGGGCGTTCTAGATCTCGTTCAGTATCCAGATCACGCTCCCCTCGCCATCCGTCGGGTTCAAGAAGTAGATATCGATCAAGGTAATCTAATTATAAAATACATGGTTCATATTTATTAATGCTTTAGGTAGACCTAAATGTGCCATATGAAATTGTCAGGTCCTACTCTCCTGCTCCGAGATGGCGAGGTGACTATTCTGTTTCCCCTGGTAGAAGGCATGCAGATTACCCAGAATCACCCAGAGGTGCTCCTCGTGAGCGAGACGGTGAGAGGAGTCGACAAGTATATTCTCCTGGTTATGATAATGCTGATGACCACGATCGCAATGGAAATGGAAATGGATATCATGAGTAA

mRNA sequence

ATGAGAAGATACAGTCCACCATACCATAGTCCTCCAAGAAGAGGATACGGTGGTCGTGGAAGAAGCCCCCCGGGTAGGGGTTATGGTGGTGGTGGAGGTGGAGGTGGCGGCGGGTATGGAAGACGAAGGGAACAACCTCATGGTAGCCTTCTGGTTAGAAATATTCCTATGGATTGCAGTGATCCTCGAGGATTTGCGTTTGTGGAGTTTGTTGATCCTTATGAGGCTTCTGAAGCTCAGTACCATATGAATGGGAAAAAATTTGCTGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGGCAAAGGAGTAGAAGGGGACCATCTGGCTATGGTGGACGCCGTTCTCATTATGGGCGTTCTAGATCTCGTTCAGTATCCAGATCACGCTCCCCTCGCCATCCGTCGGGTTCAAGAAGTAGATATCGATCAAGGTCCTACTCTCCTGCTCCGAGATGGCGAGGTGACTATTCTGTTTCCCCTGGTAGAAGGCATGCAGATTACCCAGAATCACCCAGAGGTGCTCCTCGTGAGCGAGACGGTGAGAGGAGTCGACAAGTATATTCTCCTGGTTATGATAATGCTGATGACCACGATCGCAATGGAAATGGAAATGGATATCATGAGTAA

Coding sequence (CDS)

ATGAGAAGATACAGTCCACCATACCATAGTCCTCCAAGAAGAGGATACGGTGGTCGTGGAAGAAGCCCCCCGGGTAGGGGTTATGGTGGTGGTGGAGGTGGAGGTGGCGGCGGGTATGGAAGACGAAGGGAACAACCTCATGGTAGCCTTCTGGTTAGAAATATTCCTATGGATTGCAGTGATCCTCGAGGATTTGCGTTTGTGGAGTTTGTTGATCCTTATGAGGCTTCTGAAGCTCAGTACCATATGAATGGGAAAAAATTTGCTGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGGCAAAGGAGTAGAAGGGGACCATCTGGCTATGGTGGACGCCGTTCTCATTATGGGCGTTCTAGATCTCGTTCAGTATCCAGATCACGCTCCCCTCGCCATCCGTCGGGTTCAAGAAGTAGATATCGATCAAGGTCCTACTCTCCTGCTCCGAGATGGCGAGGTGACTATTCTGTTTCCCCTGGTAGAAGGCATGCAGATTACCCAGAATCACCCAGAGGTGCTCCTCGTGAGCGAGACGGTGAGAGGAGTCGACAAGTATATTCTCCTGGTTATGATAATGCTGATGACCACGATCGCAATGGAAATGGAAATGGATATCATGAGTAA

Protein sequence

MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCSDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNADDHDRNGNGNGYHE

Homology

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BLAST of HG10014910 vs. NCBI nr
Match: XP_008461655.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >XP_008461656.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >XP_008461657.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo])

HSP 1 Score: 384.4 bits (986), Expect = 6.4e-103
Identity = 208/243 (85.60%), Postives = 212/243 (87.24%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC- 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY GGGGGGGGGYGRRREQPHGSLLVRNIPMDC 
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY-GGGGGGGGGYGRRREQPHGSLLVRNIPMDCR 60

Query: 61  -------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120
                                     +PRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT
Sbjct: 61  PEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120

Query: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS 180
           VVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS
Sbjct: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS 180

Query: 181 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNADDHDRNGNGNG 218
           YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERD ERSRQVYSPGYDNAD+HD+  NGNG
Sbjct: 181 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDVERSRQVYSPGYDNADEHDQ--NGNG 240

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BLAST of HG10014910 vs. NCBI nr
Match: KAG6601004.1 (Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 376.7 bits (966), Expect = 1.3e-100
Identity = 205/245 (83.67%), Postives = 208/245 (84.90%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC- 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC 
Sbjct: 78  MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCR 137

Query: 61  -------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120
                                      PRGFAFVEFVDPYEASEAQYHMNGKKFAGREI 
Sbjct: 138 PEELRAPFERFGLVRDVYIPKDYYTGQPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIA 197

Query: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS 180
           VVLAAESRKRPEQMRQRSRRGPS YGGRRS+YGRSRSRSVSRSRSPRHPSGSRSR+RSRS
Sbjct: 198 VVLAAESRKRPEQMRQRSRRGPSDYGGRRSYYGRSRSRSVSRSRSPRHPSGSRSRHRSRS 257

Query: 181 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNAD--DHDRNGNG 218
           YSPAPRWRGDYSVSP RRHADYP SPRGA RERDGERSRQVYSPGYDNAD  D D NGNG
Sbjct: 258 YSPAPRWRGDYSVSPSRRHADYPRSPRGAARERDGERSRQVYSPGYDNADGPDVDGNGNG 317

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BLAST of HG10014910 vs. NCBI nr
Match: XP_038892248.1 (serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Benincasa hispida])

HSP 1 Score: 376.3 bits (965), Expect = 1.7e-100
Identity = 206/245 (84.08%), Postives = 210/245 (85.71%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY--GGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY  GGGGGGGGGGYGRRREQPHGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60

Query: 61  C--------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           C                           +PRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRS 180
           ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRS+SRSRSPRHPSGSRSRYRS
Sbjct: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSISRSRSPRHPSGSRSRYRS 180

Query: 181 RSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNADDHDRNGNG 218
           RSYSPAPRWRGDYSVSP RRHADYPESPRG PRERD ER+RQVYSPGYDNADDH  N NG
Sbjct: 181 RSYSPAPRWRGDYSVSPSRRHADYPESPRG-PRERDAERNRQVYSPGYDNADDH--NHNG 240

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BLAST of HG10014910 vs. NCBI nr
Match: XP_022987464.1 (serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima] >XP_022987470.1 serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima])

HSP 1 Score: 372.1 bits (954), Expect = 3.3e-99
Identity = 203/245 (82.86%), Postives = 207/245 (84.49%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY--GGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY  GGGGGGGGGGYGRRREQPHGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60

Query: 61  C--------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           C                            PRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGQPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRS 180
           I VVLAAESRKRPEQMRQRSRRGPS YGGRRS+YGRSRSRSVSRSRSPRHPSGSRSR+RS
Sbjct: 121 IAVVLAAESRKRPEQMRQRSRRGPSDYGGRRSYYGRSRSRSVSRSRSPRHPSGSRSRHRS 180

Query: 181 RSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNADDHDRNGNG 218
           RSYSPAPRWRGDYSVSP RRHADYP SPRGA RERDGERSRQVYSPGYDNAD  D +GNG
Sbjct: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAARERDGERSRQVYSPGYDNADGPDVDGNG 240

[Close]

BLAST of HG10014910 vs. NCBI nr
Match: XP_038892246.1 (serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 [Benincasa hispida] >XP_038892247.1 serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 [Benincasa hispida])

HSP 1 Score: 370.9 bits (951), Expect = 7.3e-99
Identity = 206/248 (83.06%), Postives = 210/248 (84.68%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY--GGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY  GGGGGGGGGGYGRRREQPHGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60

Query: 61  C--------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           C                           +PRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHY---GRSRSRSVSRSRSPRHPSGSRSR 180
           ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHY   GRSRSRS+SRSRSPRHPSGSRSR
Sbjct: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGSMGRSRSRSISRSRSPRHPSGSRSR 180

Query: 181 YRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNADDHDRN 218
           YRSRSYSPAPRWRGDYSVSP RRHADYPESPRG PRERD ER+RQVYSPGYDNADDH  N
Sbjct: 181 YRSRSYSPAPRWRGDYSVSPSRRHADYPESPRG-PRERDAERNRQVYSPGYDNADDH--N 240

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BLAST of HG10014910 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.5e-51
Identity = 140/246 (56.91%), Postives = 154/246 (62.60%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIP 60
           MRRYSPPY+SPPRRGYGGRGRS    PP RGYGGGGGGGG     RR   HGSLLVRNIP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGG-----RRGSSHGSLLVRNIP 60

Query: 61  MDC--------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAG 120
           +DC                            PRGFAFVEFVD Y+A EAQ  MN + FAG
Sbjct: 61  LDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAG 120

Query: 121 REITVVLAAESRKRPEQMRQRSR-RGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSR 180
           REITVV+A+ESRKRPE+MR ++R R     G R   +GRSRSRS+SRSRSPR PS SRSR
Sbjct: 121 REITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSR 180

Query: 181 YRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDN----ADD 212
           YRSRSYSPAPR RG                PRG   E D   SR+ YSPGY+     A D
Sbjct: 181 YRSRSYSPAPRRRGG--------------PPRG---EEDENYSRRSYSPGYEGAAAAAPD 224

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BLAST of HG10014910 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 92/221 (41.63%), Postives = 111/221 (50.23%), Query Frame = 0


Query: 2   RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC-- 61
           R Y+P   SPP RGYG RGRSP  RG  G         GR R+ P  SLLVRN+  DC  
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRYG---------GRSRDLP-TSLLVRNLRHDCRQ 63

Query: 62  ------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITV 121
                                    DPRGF FV+F+DP +A++A++HM+G    GRE+TV
Sbjct: 64  EDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTV 123

Query: 122 VLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS- 181
           V A E+RK+P +MR R R      GGR     R+  R  SRSRSP  P   RSR RS   
Sbjct: 124 VFAEENRKKPTEMRARERG-----GGRFRDRRRTPPRYYSRSRSP-PPRRGRSRSRSGDY 183

Query: 182 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQV 196
           YSP PR     S+SP     D   S   +P   DG R R +
Sbjct: 184 YSPPPRRHHPRSISPREERYDGRRSYSRSPAS-DGSRGRSL 203

[Close]

BLAST of HG10014910 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.1e-16
Identity = 86/224 (38.39%), Postives = 104/224 (46.43%), Query Frame = 0


Query: 2   RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC-- 61
           R Y+P   SPP RGYG RGRSP  RG  GG          R      SLLVRN+  DC  
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRFGGS---------RDSDLPTSLLVRNLRHDCRQ 63

Query: 62  ------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITV 121
                                    DPRGF F++F+DP +A+EA++ M+G    GRE+TV
Sbjct: 64  EDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTV 123

Query: 122 VLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSY 181
           V A E+RK+P +MR R R      GGR + +   R      SRSP    G RSR RSR Y
Sbjct: 124 VFAEENRKKPTEMRTRDR------GGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGY 183

Query: 182 -SPAPRWRGDYSVSPGRRHADYPES-----PRGAPRERDGERSR 194
            SP  +     SVSP  R  +   S     P    R R G   R
Sbjct: 184 NSPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGR 208

[Close]

BLAST of HG10014910 vs. ExPASy Swiss-Prot
Match: Q9BRL6 (Serine/arginine-rich splicing factor 8 OS=Homo sapiens OX=9606 GN=SRSF8 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.3e-09
Identity = 61/151 (40.40%), Postives = 74/151 (49.01%), Query Frame = 0


Query: 62  PRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPS---G 121
           PRGFAFV F D  +A +A+  M+G +  GRE+ V +A   R+   + RQ   RG S   G
Sbjct: 54  PRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGG 113

Query: 122 YGGRRSHYGR----SRSRSVSRSRSPR-HPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRH 181
           YG R   YGR     R R  SRSR P    S SRSRYR   YS +P  R  YS       
Sbjct: 114 YGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYS------R 173

Query: 182 ADYPESPRGAPRERDGERSRQVY-SPGYDNA 204
           + Y  SP    R R+       Y S GY N+
Sbjct: 174 SRYSRSPYSRSRYRESRYGGSHYSSSGYSNS 198

[Close]

BLAST of HG10014910 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.9e-05
Identity = 74/229 (32.31%), Postives = 93/229 (40.61%), Query Frame = 0


Query: 2   RRYS--PPYHSPP--RRGYGGR--GRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNI 61
           R YS  P   SPP  R+GY        P  R +   G  G              LL+RN+
Sbjct: 9   RSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSGPSG--------------LLIRNL 68

Query: 62  PMDC--------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFA 121
           P+D                            +PRGF FV++    +A+EA   MN K   
Sbjct: 69  PLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIG 128

Query: 122 GREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSR 181
           GREI +V A E+RK P++MR       +G  GR   Y R+  RS  R    R+ S SRSR
Sbjct: 129 GREIAIVFAEENRKTPQEMRT-----TNGTSGRHGDYKRTSHRSPRR----RYRSHSRSR 188

Query: 182 YRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSP 199
              R  S   + R D   SP RR      SP   PR     +SR   SP
Sbjct: 189 SPPRRESRHSKVREDDLYSPRRRSRSISRSP--LPRNEREYKSRNCRSP 212

[Close]

BLAST of HG10014910 vs. ExPASy TrEMBL
Match: A0A1S3CFP8 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucumis melo OX=3656 GN=LOC103500205 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.1e-103
Identity = 208/243 (85.60%), Postives = 212/243 (87.24%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC- 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY GGGGGGGGGYGRRREQPHGSLLVRNIPMDC 
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY-GGGGGGGGGYGRRREQPHGSLLVRNIPMDCR 60

Query: 61  -------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120
                                     +PRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT
Sbjct: 61  PEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120

Query: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS 180
           VVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS
Sbjct: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS 180

Query: 181 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNADDHDRNGNGNG 218
           YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERD ERSRQVYSPGYDNAD+HD+  NGNG
Sbjct: 181 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDVERSRQVYSPGYDNADEHDQ--NGNG 240

[Close]

BLAST of HG10014910 vs. ExPASy TrEMBL
Match: A0A0A0KNV5 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G181460 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.5e-102
Identity = 207/246 (84.15%), Postives = 211/246 (85.77%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY---GGGGGGGGGGYGRRREQPHGSLLVRNIPM 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY   GGGGGGGGGGYGRRREQPHGSLLVRNIPM
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGGYGRRREQPHGSLLVRNIPM 60

Query: 61  DC--------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGR 120
           DC                           +PRGFAFVEFVDPYEASEAQYHMNGKKFAGR
Sbjct: 61  DCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGR 120

Query: 121 EITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYR 180
           EITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYR
Sbjct: 121 EITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYR 180

Query: 181 SRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNADDHDRNGN 218
           SRSYSPAPRWRGDYSVSPGRRH DYPESPRGAPRERD ERSRQVYSPGYDNAD+H +  N
Sbjct: 181 SRSYSPAPRWRGDYSVSPGRRHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQ--N 240

[Close]

BLAST of HG10014910 vs. ExPASy TrEMBL
Match: A0A6J1JIZ1 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita maxima OX=3661 GN=LOC111485002 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.6e-99
Identity = 203/245 (82.86%), Postives = 207/245 (84.49%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY--GGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY  GGGGGGGGGGYGRRREQPHGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60

Query: 61  C--------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           C                            PRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGQPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRS 180
           I VVLAAESRKRPEQMRQRSRRGPS YGGRRS+YGRSRSRSVSRSRSPRHPSGSRSR+RS
Sbjct: 121 IAVVLAAESRKRPEQMRQRSRRGPSDYGGRRSYYGRSRSRSVSRSRSPRHPSGSRSRHRS 180

Query: 181 RSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNADDHDRNGNG 218
           RSYSPAPRWRGDYSVSP RRHADYP SPRGA RERDGERSRQVYSPGYDNAD  D +GNG
Sbjct: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAARERDGERSRQVYSPGYDNADGPDVDGNG 240

[Close]

BLAST of HG10014910 vs. ExPASy TrEMBL
Match: A0A6J1CBL6 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Momordica charantia OX=3673 GN=LOC111010084 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.0e-98
Identity = 200/243 (82.30%), Postives = 205/243 (84.36%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC- 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY GGGGGGGGGYGRRREQ HGSLLVRNIPMDC 
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY-GGGGGGGGGYGRRREQSHGSLLVRNIPMDCR 60

Query: 61  -------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120
                                     +PRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT
Sbjct: 61  PEELRAPFERFGLVRDVYIPKDYYSGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120

Query: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS 180
           VVLAAESRKRPEQMRQRSRRGPSGYGGRRS+YGRSRSRSVSRSRSP HPSGSRSRYRSRS
Sbjct: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS 180

Query: 181 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNADDHDRNGNGNG 218
           YSPAPRWRGDYSVSP RRHADYP SPRGAP ERDGERS+Q YSPGYDNAD HD   +GNG
Sbjct: 181 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPHERDGERSQQAYSPGYDNADGHDH--DGNG 240

[Close]

BLAST of HG10014910 vs. ExPASy TrEMBL
Match: A0A6J1H0N2 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=3662 GN=LOC111458935 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.7e-98
Identity = 199/243 (81.89%), Postives = 204/243 (83.95%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC- 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY   GGGGGGGYGRRREQPHGSLLVRNIPMDC 
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY---GGGGGGGYGRRREQPHGSLLVRNIPMDCR 60

Query: 61  -------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120
                                      PRGFAFVEFVDPYEASEAQYHMNGKKFAGREI 
Sbjct: 61  PEELRAPFERFGLVRDVYIPKDYYTGQPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIA 120

Query: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS 180
           VVLAAESRKRPEQMRQRSRRGPS YGGRRS+YGRSRSRSVSRSRSPRHPSGSRSR+RSRS
Sbjct: 121 VVLAAESRKRPEQMRQRSRRGPSDYGGRRSYYGRSRSRSVSRSRSPRHPSGSRSRHRSRS 180

Query: 181 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNADDHDRNGNGNG 218
           YSPAPRWRGDYSVSP RRHADYP SPRGA RERDGER+RQVYSPGYDNAD  D +GNGNG
Sbjct: 181 YSPAPRWRGDYSVSPSRRHADYPRSPRGAARERDGERNRQVYSPGYDNADGPDVDGNGNG 240

[Close]

BLAST of HG10014910 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 203.0 bits (515), Expect = 2.5e-52
Identity = 140/246 (56.91%), Postives = 154/246 (62.60%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIP 60
           MRRYSPPY+SPPRRGYGGRGRS    PP RGYGGGGGGGG     RR   HGSLLVRNIP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGG-----RRGSSHGSLLVRNIP 60

Query: 61  MDC--------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAG 120
           +DC                            PRGFAFVEFVD Y+A EAQ  MN + FAG
Sbjct: 61  LDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAG 120

Query: 121 REITVVLAAESRKRPEQMRQRSR-RGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSR 180
           REITVV+A+ESRKRPE+MR ++R R     G R   +GRSRSRS+SRSRSPR PS SRSR
Sbjct: 121 REITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSR 180

Query: 181 YRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDN----ADD 212
           YRSRSYSPAPR RG                PRG   E D   SR+ YSPGY+     A D
Sbjct: 181 YRSRSYSPAPRRRGG--------------PPRG---EEDENYSRRSYSPGYEGAAAAAPD 224

[Close]

BLAST of HG10014910 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 94.7 bits (234), Expect = 9.5e-20
Identity = 92/221 (41.63%), Postives = 111/221 (50.23%), Query Frame = 0


Query: 2   RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC-- 61
           R Y+P   SPP RGYG RGRSP  RG  G         GR R+ P  SLLVRN+  DC  
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRYG---------GRSRDLP-TSLLVRNLRHDCRQ 63

Query: 62  ------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITV 121
                                    DPRGF FV+F+DP +A++A++HM+G    GRE+TV
Sbjct: 64  EDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTV 123

Query: 122 VLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS- 181
           V A E+RK+P +MR R R      GGR     R+  R  SRSRSP  P   RSR RS   
Sbjct: 124 VFAEENRKKPTEMRARERG-----GGRFRDRRRTPPRYYSRSRSP-PPRRGRSRSRSGDY 183

Query: 182 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQV 196
           YSP PR     S+SP     D   S   +P   DG R R +
Sbjct: 184 YSPPPRRHHPRSISPREERYDGRRSYSRSPAS-DGSRGRSL 203

[Close]

BLAST of HG10014910 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 94.7 bits (234), Expect = 9.5e-20
Identity = 92/221 (41.63%), Postives = 111/221 (50.23%), Query Frame = 0


Query: 2   RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC-- 61
           R Y+P   SPP RGYG RGRSP  RG  G         GR R+ P  SLLVRN+  DC  
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRYG---------GRSRDLP-TSLLVRNLRHDCRQ 63

Query: 62  ------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITV 121
                                    DPRGF FV+F+DP +A++A++HM+G    GRE+TV
Sbjct: 64  EDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTV 123

Query: 122 VLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS- 181
           V A E+RK+P +MR R R      GGR     R+  R  SRSRSP  P   RSR RS   
Sbjct: 124 VFAEENRKKPTEMRARERG-----GGRFRDRRRTPPRYYSRSRSP-PPRRGRSRSRSGDY 183

Query: 182 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQV 196
           YSP PR     S+SP     D   S   +P   DG R R +
Sbjct: 184 YSPPPRRHHPRSISPREERYDGRRSYSRSPAS-DGSRGRSL 203

[Close]

BLAST of HG10014910 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-19
Identity = 93/233 (39.91%), Postives = 113/233 (48.50%), Query Frame = 0


Query: 2   RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC-- 61
           R Y+P   SPP RGYG RGRSP  RG  G         GR R+ P  SLLVRN+  DC  
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRYG---------GRSRDLP-TSLLVRNLRHDCRQ 63

Query: 62  ------------------------------------SDPRGFAFVEFVDPYEASEAQYHM 121
                                                DPRGF FV+F+DP +A++A++HM
Sbjct: 64  EDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHM 123

Query: 122 NGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHP 181
           +G    GRE+TVV A E+RK+P +MR R R G S +  RR    R+  R  SRSRSP  P
Sbjct: 124 DGYLLLGRELTVVFAEENRKKPTEMRARERGGGSRFRDRR----RTPPRYYSRSRSP-PP 183

Query: 182 SGSRSRYRSRS-YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQV 196
              RSR RS   YSP PR     S+SP     D   S   +P   DG R R +
Sbjct: 184 RRGRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPAS-DGSRGRSL 216

[Close]

BLAST of HG10014910 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-17
Identity = 86/224 (38.39%), Postives = 104/224 (46.43%), Query Frame = 0


Query: 2   RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC-- 61
           R Y+P   SPP RGYG RGRSP  RG  GG          R      SLLVRN+  DC  
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRFGGS---------RDSDLPTSLLVRNLRHDCRQ 63

Query: 62  ------------------------SDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITV 121
                                    DPRGF F++F+DP +A+EA++ M+G    GRE+TV
Sbjct: 64  EDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTV 123

Query: 122 VLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSY 181
           V A E+RK+P +MR R R      GGR + +   R      SRSP    G RSR RSR Y
Sbjct: 124 VFAEENRKKPTEMRTRDR------GGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGY 183

Query: 182 -SPAPRWRGDYSVSPGRRHADYPES-----PRGAPRERDGERSR 194
            SP  +     SVSP  R  +   S     P    R R G   R
Sbjct: 184 NSPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGR 208

The following BLAST results are available for this feature:

BLAST of HG10014910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461655.1	6.4e-103	85.60	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >...	[more]
KAG6601004.1	1.3e-100	83.67	Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyros...	[more]
XP_038892248.1	1.7e-100	84.08	serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Benincasa hispi...	[more]
XP_022987464.1	3.3e-99	82.86	serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima] >XP_0229...	[more]
XP_038892246.1	7.3e-99	83.06	serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 [Benincasa hispi...	[more]

BLAST of HG10014910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3X8	3.5e-51	56.91	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q9SEU4	1.3e-18	41.63	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	8.1e-16	38.39	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q9BRL6	7.3e-09	40.40	Serine/arginine-rich splicing factor 8 OS=Homo sapiens OX=9606 GN=SRSF8 PE=1 SV=...	[more]
Q1PDV2	4.9e-05	32.31	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]

BLAST of HG10014910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CFP8	3.1e-103	85.60	serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucumis melo OX=3656 GN=...	[more]
A0A0A0KNV5	4.5e-102	84.15	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G181460 PE=4 SV...	[more]
A0A6J1JIZ1	1.6e-99	82.86	serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1CBL6	3.0e-98	82.30	serine/arginine-rich SC35-like splicing factor SCL30 OS=Momordica charantia OX=3...	[more]
A0A6J1H0N2	6.7e-98	81.89	serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=36...	[more]

BLAST of HG10014910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55460.1	2.5e-52	56.91	SC35-like splicing factor 30	[more]
AT1G55310.1	9.5e-20	41.63	SC35-like splicing factor 33	[more]
AT1G55310.2	9.5e-20	41.63	SC35-like splicing factor 33	[more]
AT1G55310.3	2.1e-19	39.91	SC35-like splicing factor 33	[more]
AT3G13570.1	5.7e-17	38.39	SC35-like splicing factor 30A	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 61..94 e-value: 2.1E-7 score: 30.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 39..100 score: 9.712083
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 45..138 e-value: 2.6E-12 score: 49.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..148
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 23..59
None	No IPR available	PANTHER	PTHR23147:SF96	OS02G0252100 PROTEIN	coord: 59..215
None	No IPR available	PANTHER	PTHR23147:SF96	OS02G0252100 PROTEIN	coord: 23..59
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 59..215
None	No IPR available	CDD	cd00590	RRM_SF	coord: 50..95 e-value: 8.38874E-9 score: 48.8405
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 45..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014910.1	HG10014910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding