HG10014821 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10014821
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr02: 20519454 .. 20519951 (-)
RNA-Seq ExpressionHG10014821
SyntenyHG10014821
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATGTGTAAGATGTTACCACAACTTCGTTAGAACAAAAACCCCAAAATACAATCGTCAGAAATCTTTGCTCTCCAATTCTGGCCGACTTGGACAAGACGACATCATACTTCTTAGTCATATTGGGGTACAGAAGCCCCTATTTTCGCACAGGTCGAGCTTCCTCTTCTTCTTCCCCATCAAACAGCTGATATATGTAAGTTTCCTCAACCGCGTTCCGAAACCCAATTTCAGGTGTGGAACCAGCCCCTTGAGGTACATTTCGGTTCCAAAGCTTGGCCACCCAGTCTCCGTCACGATCATTGGAACATTCTCGTGTCCGGCCACCGCCATTGCACTAATCACTGCATCTATCATGGAGTCAAAAAGATTCCGGTATCATCCTGAAATTGAAAGGGTGATTCATTGGGATTTCGGAGTTCAATCGATACAAATTGTAAGGGTAAATAAGATGGCATCAACAACTTCGCTGCTGACTACAATCCACATCAACTAA

mRNA sequence

ATGACATGTGTAAGATGTTACCACAACTTCGTTAGAACAAAAACCCCAAAATACAATCGTCAGAAATCTTTGCTCTCCAATTCTGGCCGACTTGGACAAGACGACATCATACTTCTTAGTCATATTGGGGTACAGAAGCCCCTATTTTCGCACAGGTCGAGCTTCCTCTTCTTCTTCCCCATCAAACAGCTGATATATGTAAGTTTCCTCAACCGCGTTCCGAAACCCAATTTCAGGTGTGGAACCAGCCCCTTGAGGTACATTTCGGTTCCAAAGCTTGGCCACCCAGTCTCCGTCACGATCATTGGAACATTCTCGTGTCCGGCCACCGCCATTGCACTAATCACTGCATCTATCATGGAGTCAAAAAGATTCCGGTATCATCCTGAAATTGAAAGGGTGATTCATTGGGATTTCGGAGTTCAATCGATACAAATTGTAAGGGTAAATAAGATGGCATCAACAACTTCGCTGCTGACTACAATCCACATCAACTAA

Coding sequence (CDS)

ATGACATGTGTAAGATGTTACCACAACTTCGTTAGAACAAAAACCCCAAAATACAATCGTCAGAAATCTTTGCTCTCCAATTCTGGCCGACTTGGACAAGACGACATCATACTTCTTAGTCATATTGGGGTACAGAAGCCCCTATTTTCGCACAGGTCGAGCTTCCTCTTCTTCTTCCCCATCAAACAGCTGATATATGTAAGTTTCCTCAACCGCGTTCCGAAACCCAATTTCAGGTGTGGAACCAGCCCCTTGAGGTACATTTCGGTTCCAAAGCTTGGCCACCCAGTCTCCGTCACGATCATTGGAACATTCTCGTGTCCGGCCACCGCCATTGCACTAATCACTGCATCTATCATGGAGTCAAAAAGATTCCGGTATCATCCTGAAATTGAAAGGGTGATTCATTGGGATTTCGGAGTTCAATCGATACAAATTGTAAGGGTAAATAAGATGGCATCAACAACTTCGCTGCTGACTACAATCCACATCAACTAA

Protein sequence

MTCVRCYHNFVRTKTPKYNRQKSLLSNSGRLGQDDIILLSHIGVQKPLFSHRSSFLFFFPIKQLIYVSFLNRVPKPNFRCGTSPLRYISVPKLGHPVSVTIIGTFSCPATAIALITASIMESKRFRYHPEIERVIHWDFGVQSIQIVRVNKMASTTSLLTTIHIN
Homology
[Close]
BLAST of HG10014821 vs. NCBI nr
Match: KAF4386142.1 (hypothetical protein F8388_016394 [Cannabis sativa])

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-09
Identity = 48/114 (42.11%), Postives = 61/114 (53.51%), Query Frame = 0 

Query: 35  DIILLSHIGVQK---PLFSHRSSFLFFFPIKQLIYVSFLN------------RVPKPNFR 94
           ++ILL HIG++    P+    S FLF   I+ L+YVS  N            +VP     
Sbjct: 12  NVILLGHIGIKNPPCPILLRSSKFLFL--IEHLVYVSLCNPFFPQGSSKSRSQVPYQTLH 71

Query: 95  CGTSPLRYISVPKLGHPVSVTIIGTFSCPATAIALITASIMESKRFRYHPEIER 134
            G +     S  +LGHPVSVT  G FSCP TA+A ITAS + SKRFRY   + R
Sbjct: 72  IGLASNSPASPLELGHPVSVTTNGMFSCPDTAMAQITASTITSKRFRYLTPVVR 123

[Close]
BLAST of HG10014821 vs. ExPASy TrEMBL
Match: A0A7J6GT78 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_016394 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.9e-10
Identity = 48/114 (42.11%), Postives = 61/114 (53.51%), Query Frame = 0 

Query: 35  DIILLSHIGVQK---PLFSHRSSFLFFFPIKQLIYVSFLN------------RVPKPNFR 94
           ++ILL HIG++    P+    S FLF   I+ L+YVS  N            +VP     
Sbjct: 12  NVILLGHIGIKNPPCPILLRSSKFLFL--IEHLVYVSLCNPFFPQGSSKSRSQVPYQTLH 71

Query: 95  CGTSPLRYISVPKLGHPVSVTIIGTFSCPATAIALITASIMESKRFRYHPEIER 134
            G +     S  +LGHPVSVT  G FSCP TA+A ITAS + SKRFRY   + R
Sbjct: 72  IGLASNSPASPLELGHPVSVTTNGMFSCPDTAMAQITASTITSKRFRYLTPVVR 123

The following BLAST results are available for this feature:
BLAST of HG10014821 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4386142.11.8e-0942.11hypothetical protein F8388_016394 [Cannabis sativa][more]
BLAST of HG10014821 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10014821 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6GT788.9e-1042.11Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_016394 PE=4 SV=1[more]
BLAST of HG10014821 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10014821.1HG10014821.1mRNA