HG10014772 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10014772
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr02: 19617976 .. 19619371 (+)
RNA-Seq ExpressionHG10014772
SyntenyHG10014772
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAAGCCTCTTATGCCATTAATTGGCTTCCATGTTCCTTGCTATGTGACAAATATTAAAAGTAACATTAGGAGTCTAGAGATAATATGCTATTATTTTAAATAAAAGTTTGGCTCAATTTTTCTTTTCAGGCCCCTCATCATTGAGTTCTTTTAGAAAAAAGTATATATATAATAATATTTAATACCAAAAGAAGCATGTGAGAGAAGTTTCTTATTGGCATGAACTTTCAAAAATGGTTTTTTCAAAACCTATACAAGTAAAGAAAGTTTCTCTAAAAATTTAAAAATTATTGCCCTCGTAATGAAAACAATAATTGACAAGAAACTTTGAAGGATAAAACAAGATATATTTCTTATATACATCACTGTATATTTGAATTTTCTAAAAATAAACTAGGTTGTAACAACATTAGTTGTGAGAAAGTTAGATGGTAGTAGGTCATGGTTATATTTTGAATTCTTTAATTGCTTGAATAAAACGCTTTTTGCATGGATTGGAAAATTTGTTTGAAACAAAGTCTTGCATGGTATGATTTGAGCCAAAAATGGCTAGAAGAAAAAAAGAGATATAGGTTGTTTTTATATCTAAATTGATGTGACACACCAACTAAACAAGATTATTAGGAAAGACCCACCTTTTAAGTTATCTTTTTTTTTTTTTTAATTTTTTTTCTCTTTTTTCTTTTTTGTATGAACTACTAAAAAAAAAGTATTTGAGTATCTGAAAATTTTAGGGTAAGTTGTATTTTAATTTAATACTTGAGTATCTAAAAAAGTACTATTGAATTGTTGAATGTAATGACATAACATATTTATTAGACAAATGTTAGATTAATTTTATTAGACGTGGAAAAAAAATATTAAGGAGGTAGATACTTTTTTTTTTTTGGGTACATAAAAGGGTTAGAAACTAACACAAGATAAAGTGGCATGTGCATTACCTTATTAAATGTTTTAATACATTGCATCATCGTATAGTTAAAAAAATGTATAAGCACAATAAAGTTTGGAGGCACTATCAAAGTCTAAAAAAACATTAAATAACATACCACCATCAAACTTCAAATTTTAAGTTTGTTATTTGATTTTGCACGACCTTCGAGATCTTGATTGCTTCAGCAATCTGGCATAGGCACAATCTGATTGTGTTCTATGGCCACATTTCTCCTCTGTTTGATCCTATTCGATGGACCGTGAACGAGCTTGAAGATTTTGACCGGCTTTCTGGATTGGATTCTGCGCAGTTGGATCATGCTCCATTGGTACGTATGGAAGATTCCCATTGTTTAGCTCCTCCGCCCGACCTTTTCAAGATGAATTATGGTGCCATTGTTCGAATGGTGAAGTCATGCTTGGGATGGAAAGGTACTACTTCCTATCGGGTTTTGTAG

mRNA sequence

ATGACCAAGCCTCTTATGCCATTAATTGGCTTCCATGTTCCTTGCTATGTGACAAATATTAAAACAATCTGGCATAGGCACAATCTGATTGTGTTCTATGGCCACATTTCTCCTCTGTTTGATCCTATTCGATGGACCGTGAACGAGCTTGAAGATTTTGACCGGCTTTCTGGATTGGATTCTGCGCAGTTGGATCATGCTCCATTGGTACGTATGGAAGATTCCCATTGTTTAGCTCCTCCGCCCGACCTTTTCAAGATGAATTATGGTGCCATTGTTCGAATGGTGAAGTCATGCTTGGGATGGAAAGGTACTACTTCCTATCGGGTTTTGTAG

Coding sequence (CDS)

ATGACCAAGCCTCTTATGCCATTAATTGGCTTCCATGTTCCTTGCTATGTGACAAATATTAAAACAATCTGGCATAGGCACAATCTGATTGTGTTCTATGGCCACATTTCTCCTCTGTTTGATCCTATTCGATGGACCGTGAACGAGCTTGAAGATTTTGACCGGCTTTCTGGATTGGATTCTGCGCAGTTGGATCATGCTCCATTGGTACGTATGGAAGATTCCCATTGTTTAGCTCCTCCGCCCGACCTTTTCAAGATGAATTATGGTGCCATTGTTCGAATGGTGAAGTCATGCTTGGGATGGAAAGGTACTACTTCCTATCGGGTTTTGTAG

Protein sequence

MTKPLMPLIGFHVPCYVTNIKTIWHRHNLIVFYGHISPLFDPIRWTVNELEDFDRLSGLDSAQLDHAPLVRMEDSHCLAPPPDLFKMNYGAIVRMVKSCLGWKGTTSYRVL
Homology
[Close]
BLAST of HG10014772 vs. NCBI nr
Match: XP_038897425.1 (uncharacterized protein LOC120085494 [Benincasa hispida])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 28/66 (42.42%), Postives = 34/66 (51.52%), Query Frame = 0 

Query: 23 IWHRHNLIVFYGHISPLFDPIRWTVNELEDFDRLSGLDSAQLDHAPLVRMEDSHCLAPPP 82
          IWH HN +VFYG I P F  I W VN +E  +    L       +P + M   H   PPP
Sbjct: 21 IWHEHNQLVFYGQIFPFFHSIWWAVNLVESINYQPELVPDPSSRSPSLIMLAPHWSTPPP 80

Query: 83 DLFKMN 89
          D FK+N
Sbjct: 81 DSFKVN 86

The following BLAST results are available for this feature:
BLAST of HG10014772 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897425.11.9e-0542.42uncharacterized protein LOC120085494 [Benincasa hispida][more]
BLAST of HG10014772 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10014772 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10014772 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10014772.1HG10014772.1mRNA