HG10014696 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10014696
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr02: 18104154 .. 18104387 (+)
RNA-Seq ExpressionHG10014696
SyntenyHG10014696
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCAAGGAAGAGATCCTCTGGAACCCTAAACGCACCGTGAATGCACACAATGGCCAATCCAATCATCGACGTCGAAATCAGGAGCGATCCAACACTAGTGAGAAACACTACAATGACAGTCAAAACCCCCAACCCGACCAACGTTTCAAAATCGGAAAAAGTACGGCCACGAATAACCAGCGGCTGATCGGAAGGACGGAAAATGTAGAGAAAGCTCCAAGCCGCGAGAAGTGA

mRNA sequence

GTCAAGGAAGAGATCCTCTGGAACCCTAAACGCACCGTGAATGCACACAATGGCCAATCCAATCATCGACGTCGAAATCAGGAGCGATCCAACACTAGTGAGAAACACTACAATGACAGTCAAAACCCCCAACCCGACCAACGTTTCAAAATCGGAAAAAGTACGGCCACGAATAACCAGCGGCTGATCGGAAGGACGGAAAATGTAGAGAAAGCTCCAAGCCGCGAGAAGTGA

Coding sequence (CDS)

GTCAAGGAAGAGATCCTCTGGAACCCTAAACGCACCGTGAATGCACACAATGGCCAATCCAATCATCGACGTCGAAATCAGGAGCGATCCAACACTAGTGAGAAACACTACAATGACAGTCAAAACCCCCAACCCGACCAACGTTTCAAAATCGGAAAAAGTACGGCCACGAATAACCAGCGGCTGATCGGAAGGACGGAAAATGTAGAGAAAGCTCCAAGCCGCGAGAAGTGA

Protein sequence

VKEEILWNPKRTVNAHNGQSNHRRRNQERSNTSEKHYNDSQNPQPDQRFKIGKSTATNNQRLIGRTENVEKAPSREK
Homology
BLAST of HG10014696 vs. NCBI nr
Match: KAF5453720.1 (hypothetical protein F2P56_028603 [Juglans regia])

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-07
Identity = 33/77 (42.86%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1   VKEEILWNPKRTVNAHNGQSNHRRRNQERSNTSEKHYNDSQNPQPDQRFKIGKSTATNNQ 60
           ++EEI+ NPKRTV A++G+++H+ R+++RS+  E+ ++D Q  Q ++ F +G+  A N+Q
Sbjct: 61  IEEEIIGNPKRTVCANDGEADHQSRDEKRSDAGEEDHDDCQKGQAEKGFPVGEGPAENDQ 120

Query: 61  RLIGRTENVEKAPSREK 78
           RLIG +E+VE++P  E+
Sbjct: 121 RLIGLSEDVEESPGPEE 137

BLAST of HG10014696 vs. NCBI nr
Match: KAF7825488.1 (hypothetical protein G2W53_016652 [Senna tora])

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-04
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 1   VKEEILWNPKRTVNAHNGQSNHRRRNQERSNTSEKHYNDSQNPQPDQRFKIGKSTATNNQ 60
           ++E+I  NP+ T++ + G ++H  RN+ RS+T +KH+   +  Q  Q FKI +S   N+Q
Sbjct: 57  IQEQIFGNPEGTMSTNKGHAHHESRNKNRSDTGKKHHEHGEATQEGQSFKIRESATKNDQ 116

Query: 61  RLIGRTENVEKAPSREK 78
           RLI  TE VE+ P  E+
Sbjct: 117 RLIRGTEEVEEHPRCEQ 133

BLAST of HG10014696 vs. NCBI nr
Match: KAF3558694.1 (hypothetical protein F2Q69_00017740 [Brassica cretica])

HSP 1 Score: 54.3 bits (129), Expect = 5.4e-04
Identity = 31/77 (40.26%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 1   VKEEILWNPKRTVNAHNGQSNHRRRNQERSNTSEKHYNDSQNPQPDQRFKIGKSTATNNQ 60
           ++E+I+ NPKRTV A++  +N +RR+Q+R NT  KH ++ ++ +  QR  I ++T+ +NQ
Sbjct: 83  IQEQIIRNPKRTVQANDRHTNSQRRSQQRPNTRHKHDHNRRHDKTKQRLAIREATSEHNQ 142

Query: 61  RLIGRTENVEKAPSREK 78
           R + R E VE+ P  E+
Sbjct: 143 RPVRRPEEVEEYPRGEE 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF5453720.15.2e-0742.86hypothetical protein F2P56_028603 [Juglans regia][more]
KAF7825488.14.1e-0440.26hypothetical protein G2W53_016652 [Senna tora][more]
KAF3558694.15.4e-0440.26hypothetical protein F2Q69_00017740 [Brassica cretica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10014696.1HG10014696.1mRNA