HG10014588 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014588
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	wiskott-Aldrich syndrome protein family member 2-like
Location	Chr02: 15421356 .. 15421610 (+)
RNA-Seq Expression	HG10014588
Synteny	HG10014588

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCCGAGCGTCAAGTGTACACCATGCACCCGTTATCCACTACCACCACCACCTCCACCGAAGAAACCCCCACCGGCTTATTGCCCTCCGCCACCTCCTCCTCCGTCGTCTTTCATATACATGCTCGGCCCGCCGGGAAACTTGTATCCCATCGACCAGGACTTCGCAGGGGCTGATCGGAGGAGGATGGCCGTGGAGTTGCCGATTGTTGCTCTCTTTGGACTGATTGTGTTTATTGCTTTGTGGGGATTTTGA

mRNA sequence

GATCCGAGCGTCAAGTGTACACCATGCACCCGTTATCCACTACCACCACCACCTCCACCGAAGAAACCCCCACCGGCTTATTGCCCTCCGCCACCTCCTCCTCCGTCGTCTTTCATATACATGCTCGGCCCGCCGGGAAACTTGTATCCCATCGACCAGGACTTCGCAGGGGCTGATCGGAGGAGGATGGCCGTGGAGTTGCCGATTGTTGCTCTCTTTGGACTGATTGTGTTTATTGCTTTGTGGGGATTTTGA

Coding sequence (CDS)

GATCCGAGCGTCAAGTGTACACCATGCACCCGTTATCCACTACCACCACCACCTCCACCGAAGAAACCCCCACCGGCTTATTGCCCTCCGCCACCTCCTCCTCCGTCGTCTTTCATATACATGCTCGGCCCGCCGGGAAACTTGTATCCCATCGACCAGGACTTCGCAGGGGCTGATCGGAGGAGGATGGCCGTGGAGTTGCCGATTGTTGCTCTCTTTGGACTGATTGTGTTTATTGCTTTGTGGGGATTTTGA

Protein sequence

DPSVKCTPCTRYPLPPPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGLIVFIALWGF

Homology

[Close]

BLAST of HG10014588 vs. NCBI nr
Match: XP_023546806.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 5.0e-27
Identity = 68/81 (83.95%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1   DPSVKCTPCTRYPLPPPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADR 60
           DPSVKCTPCT  P PPPPPPKKP PAYCPPPPPPPSSFIY+LGPPGNLYPID+DFAGADR
Sbjct: 45  DPSVKCTPCTHNPPPPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADR 104

Query: 61  RRMAVELPIVALFGLIVFIAL 82
           RR+AVEL  VALFGLI F+ +
Sbjct: 105 RRVAVELSAVALFGLIGFLGV 125

[Close]

BLAST of HG10014588 vs. NCBI nr
Match: XP_022942055.1 (probable glycosyltransferase 4 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 5.0e-27
Identity = 68/81 (83.95%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1   DPSVKCTPCTRYPLPPPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADR 60
           DPSVKCTPCT  P PPPPPPKKP PAYCPPPPPPPSSFIY+LGPPGNLYPID+DFAGADR
Sbjct: 45  DPSVKCTPCTHNPPPPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADR 104

Query: 61  RRMAVELPIVALFGLIVFIAL 82
           RR+AVEL  VALFGLI F+ +
Sbjct: 105 RRVAVELSAVALFGLIGFLGV 125

[Close]

BLAST of HG10014588 vs. NCBI nr
Match: KAG7031461.1 (hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.5 bits (319), Expect = 5.5e-26
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1   DPSVKCTPCTRYPLPPPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADR 60
           DP VKCTPCT  P PPPPPPKKP PAYCPPPPPPPSSFIY+LGPPGNLYPID+DFAGADR
Sbjct: 44  DPRVKCTPCTHNPPPPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADR 103

Query: 61  RRMAVELPIVALFGLIVFIAL 82
           RR+ VEL  VALFGLI F+ +
Sbjct: 104 RRVVVELSAVALFGLIGFLGV 124

[Close]

BLAST of HG10014588 vs. NCBI nr
Match: KAG6600825.1 (hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.5 bits (319), Expect = 5.5e-26
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1   DPSVKCTPCTRYPLPPPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADR 60
           DP VKCTPCT  P PPPPPPKKP PAYCPPPPPPPSSFIY+LGPPGNLYPID+DFAGADR
Sbjct: 44  DPRVKCTPCTHNPPPPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADR 103

Query: 61  RRMAVELPIVALFGLIVFIAL 82
           RR+ VEL  VALFGLI F+ +
Sbjct: 104 RRVVVELSAVALFGLIGFLGV 124

[Close]

BLAST of HG10014588 vs. NCBI nr
Match: XP_022155381.1 (acrosin-like [Momordica charantia])

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1   DPSVKCTPCTRY--PLPPPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGA 60
           D +VKCTPCTRY  P PPPPPPKKPP +YCPPPPPPPSSFIYMLGPPGNLYPI QDFAG 
Sbjct: 37  DSTVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPSSFIYMLGPPGNLYPIGQDFAGG 96

Query: 61  DRRRMAVELPIVALFGLIVFIALW 83
            RRR+AVELP+VAL GL+ FIA+W
Sbjct: 97  -RRRVAVELPVVALLGLMGFIAVW 119

[Close]

BLAST of HG10014588 vs. ExPASy TrEMBL
Match: A0A6J1FVH5 (probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.4e-27
Identity = 68/81 (83.95%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1   DPSVKCTPCTRYPLPPPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADR 60
           DPSVKCTPCT  P PPPPPPKKP PAYCPPPPPPPSSFIY+LGPPGNLYPID+DFAGADR
Sbjct: 45  DPSVKCTPCTHNPPPPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADR 104

Query: 61  RRMAVELPIVALFGLIVFIAL 82
           RR+AVEL  VALFGLI F+ +
Sbjct: 105 RRVAVELSAVALFGLIGFLGV 125

[Close]

BLAST of HG10014588 vs. ExPASy TrEMBL
Match: A0A6J1DRJ1 (acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1   DPSVKCTPCTRY--PLPPPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGA 60
           D +VKCTPCTRY  P PPPPPPKKPP +YCPPPPPPPSSFIYMLGPPGNLYPI QDFAG 
Sbjct: 37  DSTVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPSSFIYMLGPPGNLYPIGQDFAGG 96

Query: 61  DRRRMAVELPIVALFGLIVFIALW 83
            RRR+AVELP+VAL GL+ FIA+W
Sbjct: 97  -RRRVAVELPVVALLGLMGFIAVW 119

[Close]

BLAST of HG10014588 vs. ExPASy TrEMBL
Match: A0A0A0KSV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1   DPSVKCTPCTRYPLPPPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADR 60
           D SVKCTPCTRY  PPPPPPKKPPP YCPPPP PPSSFIYMLGPP NLYPI+ DFA ADR
Sbjct: 44  DSSVKCTPCTRYSPPPPPPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADR 103

Query: 61  RRMAVELPIVALFGLIVFIAL 82
           R +A+ELP+VA FGLI  IAL
Sbjct: 104 RSVAMELPVVAFFGLIGLIAL 124

[Close]

BLAST of HG10014588 vs. ExPASy TrEMBL
Match: A5B8N9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04830 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 51/93 (54.84%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 1   DPSVKC-------TPCTRYPLP-----PPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNL 60
           D  VKC        PC + P P     PPPPPKKP   YCPPPPPPP+SF+Y+ GPPG L
Sbjct: 45  DAGVKCGGCSSCQNPCNQSPPPPPPPSPPPPPKKPRAPYCPPPPPPPASFLYVTGPPGTL 104

Query: 61  YPIDQDFAGADRRRMAVELPIVALFGLIVFIAL 82
           YPIDQD+ GA R  M V LPI+A  GL+  + L
Sbjct: 105 YPIDQDYGGAGRNFM-VGLPILAGCGLLNLLLL 136

[Close]

BLAST of HG10014588 vs. ExPASy TrEMBL
Match: A0A438C166 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_011633 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 51/93 (54.84%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 1   DPSVKC-------TPCTRYPLP-----PPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNL 60
           D  VKC        PC + P P     PPPPPKKP   YCPPPPPPP+SF+Y+ GPPG L
Sbjct: 45  DAGVKCGGCSSCQNPCNQSPPPPPPPSPPPPPKKPRAPYCPPPPPPPASFLYVTGPPGTL 104

Query: 61  YPIDQDFAGADRRRMAVELPIVALFGLIVFIAL 82
           YPIDQD+ GA R  M V LPI+A  GL+  + L
Sbjct: 105 YPIDQDYGGAGRNFM-VGLPILAGCGLLNLLLL 136

[Close]

BLAST of HG10014588 vs. TAIR 10
Match: AT1G23040.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.1e-11
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 1   DPSVKCTP-CTRYPLPPPPPPKKPPPAYCPP----------------PPPPPSSFIYMLG 60
           DP +KC+P C + P PP PPP  PPP  CPP                PPPPP++F+Y+ G
Sbjct: 47  DP-IKCSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKKVSSYCPPPPPANFLYITG 106

Query: 61  PPGNLYPIDQDF-AGADRRRMAVELPIVALFGLIVFIAL 82
           PPGNLYP+D+ F A A +  M V+L  +  FG++ F+ L
Sbjct: 107 PPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIMAFLIL 144

[Close]

BLAST of HG10014588 vs. TAIR 10
Match: AT1G70990.1 (proline-rich family protein )

HSP 1 Score: 60.8 bits (146), Expect = 5.9e-10
Identity = 45/92 (48.91%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 1   DPSVKCTPCTR-YPLPPPPPPKKPPPAY-CPPP------------PPPPSSFIYMLGPPG 60
           DP +KCTPC +  P P PPPP  PPP+  CPPP            PPPPS++IYM GPPG
Sbjct: 80  DP-IKCTPCLQNIPPPSPPPPSPPPPSQACPPPPLPPSPPKKSYCPPPPSTYIYMTGPPG 139

Query: 61  NLYPIDQDFAGADRRRMAVELPIVALFGLIVF 79
            LYPIDQ F  A    +     +V + GLI F
Sbjct: 140 ELYPIDQQFGAA----VTKSFTVVKISGLIAF 166

The following BLAST results are available for this feature:

BLAST of HG10014588 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546806.1	5.0e-27	83.95	formin-like protein 20 [Cucurbita pepo subsp. pepo]	[more]
XP_022942055.1	5.0e-27	83.95	probable glycosyltransferase 4 [Cucurbita moschata]	[more]
KAG7031461.1	5.5e-26	81.48	hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600825.1	5.5e-26	81.48	hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022155381.1	2.1e-25	80.95	acrosin-like [Momordica charantia]	[more]

BLAST of HG10014588 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10014588 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVH5	2.4e-27	83.95	probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=...	[more]
A0A6J1DRJ1	1.0e-25	80.95	acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1	[more]
A0A0A0KSV7	1.1e-24	80.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1	[more]
A5B8N9	3.1e-11	54.84	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04830 PE=4 SV=...	[more]
A0A438C166	3.1e-11	54.84	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_011633 PE=4 SV=1	[more]

BLAST of HG10014588 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23040.1	3.1e-11	44.44	hydroxyproline-rich glycoprotein family protein	[more]
AT1G70990.1	5.9e-10	48.91	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35094	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 6..82
None	No IPR available	PANTHER	PTHR35094:SF1	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 6..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014588.1	HG10014588.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity