HG10014519 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014519
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X2
Location	Chr02: 13456690 .. 13456905 (+)
RNA-Seq Expression	HG10014519
Synteny	HG10014519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTAATCAAACTTATGTATATAAATGTCAATTACATTGATAGTGGTGTTCTTATACAATTTTATTACCTGTGTTTTTCTTATAACTTTATAAACAGAGGTGCACGGCCATCAATCAAAGATTGTGGAGGATTAAGTGCGTTAGAAAGAGCAATGGAAATGGGAGCAATAACCGATGAGGAGCTATTTCTATTGCTTACAGGATCTGAATGA

mRNA sequence

ATGGCTTTAATCAAACTTATGTATATAAATGTCAATTACATTGATAGTGGTGTTCTTATACAATTTTATTACCTGTGTTTTTCTTATAACTTTATAAACAGAGGTGCACGGCCATCAATCAAAGATTGTGGAGGATTAAGTGCGTTAGAAAGAGCAATGGAAATGGGAGCAATAACCGATGAGGAGCTATTTCTATTGCTTACAGGATCTGAATGA

Coding sequence (CDS)

ATGGCTTTAATCAAACTTATGTATATAAATGTCAATTACATTGATAGTGGTGTTCTTATACAATTTTATTACCTGTGTTTTTCTTATAACTTTATAAACAGAGGTGCACGGCCATCAATCAAAGATTGTGGAGGATTAAGTGCGTTAGAAAGAGCAATGGAAATGGGAGCAATAACCGATGAGGAGCTATTTCTATTGCTTACAGGATCTGAATGA

Protein sequence

MALIKLMYINVNYIDSGVLIQFYYLCFSYNFINRGARPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE

Homology

[Close]

BLAST of HG10014519 vs. NCBI nr
Match: XP_031741047.1 (ADP-ribosylation factor GTPase-activating protein AGD4 isoform X4 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 32  INRGARPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 72
           + RGA+PSIKDCGGLSALERAMEMGAITDEELFLLLTGSE
Sbjct: 633 LRRGAKPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 672

[Close]

BLAST of HG10014519 vs. NCBI nr
Match: XP_031741046.1 (ADP-ribosylation factor GTPase-activating protein AGD4 isoform X2 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 32  INRGARPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 72
           + RGA+PSIKDCGGLSALERAMEMGAITDEELFLLLTGSE
Sbjct: 740 LRRGAKPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 779

[Close]

BLAST of HG10014519 vs. NCBI nr
Match: XP_008454718.1 (PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X2 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 32  INRGARPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 72
           + RGA+PSIKDCGGLSALERAMEMGAITDEELFLLLTGSE
Sbjct: 736 LRRGAKPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 775

[Close]

BLAST of HG10014519 vs. NCBI nr
Match: XP_008454719.1 (PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X4 [Cucumis melo] >XP_008454720.1 PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X4 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 32  INRGARPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 72
           + RGA+PSIKDCGGLSALERAMEMGAITDEELFLLLTGSE
Sbjct: 633 LRRGAKPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 672

[Close]

BLAST of HG10014519 vs. NCBI nr
Match: XP_011654489.1 (ADP-ribosylation factor GTPase-activating protein AGD4 isoform X1 [Cucumis sativus] >KAE8648217.1 hypothetical protein Csa_018403 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 32  INRGARPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 72
           + RGA+PSIKDCGGLSALERAMEMGAITDEELFLLLTGSE
Sbjct: 741 LRRGAKPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 780

[Close]

BLAST of HG10014519 vs. ExPASy Swiss-Prot
Match: Q9C6C3 (ADP-ribosylation factor GTPase-activating protein AGD2 OS=Arabidopsis thaliana OX=3702 GN=AGD2 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-10
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 27  FSYNFINRGARPSIKDCGGLSALERAMEMGAITDEELFLLL 68
           F+   + RGARPSI+D GGLS LERAMEMGAITDEELFLLL
Sbjct: 732 FAKVLLRRGARPSIEDGGGLSVLERAMEMGAITDEELFLLL 772

[Close]

BLAST of HG10014519 vs. ExPASy Swiss-Prot
Match: Q9SMX5 (ADP-ribosylation factor GTPase-activating protein AGD4 OS=Arabidopsis thaliana OX=3702 GN=AGD4 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-10
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 27  FSYNFINRGARPSIKDCGGLSALERAMEMGAITDEELFLLL 68
           F+   + RGARPSI+D GGLS LERAMEMGAITDEELFLLL
Sbjct: 731 FAKILLRRGARPSIEDDGGLSVLERAMEMGAITDEELFLLL 771

[Close]

BLAST of HG10014519 vs. ExPASy TrEMBL
Match: A0A1S3BYT7 (ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103495062 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 32  INRGARPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 72
           + RGA+PSIKDCGGLSALERAMEMGAITDEELFLLLTGSE
Sbjct: 633 LRRGAKPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 672

[Close]

BLAST of HG10014519 vs. ExPASy TrEMBL
Match: A0A0A0KJC8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G053060 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 32  INRGARPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 72
           + RGA+PSIKDCGGLSALERAMEMGAITDEELFLLLTGSE
Sbjct: 699 LRRGAKPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 738

[Close]

BLAST of HG10014519 vs. ExPASy TrEMBL
Match: A0A1S4E0Y6 (ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103495062 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 32  INRGARPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 72
           + RGA+PSIKDCGGLSALERAMEMGAITDEELFLLLTGSE
Sbjct: 691 LRRGAKPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 730

[Close]

BLAST of HG10014519 vs. ExPASy TrEMBL
Match: A0A1S3C009 (ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495062 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 32  INRGARPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 72
           + RGA+PSIKDCGGLSALERAMEMGAITDEELFLLLTGSE
Sbjct: 741 LRRGAKPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 780

[Close]

BLAST of HG10014519 vs. ExPASy TrEMBL
Match: A0A1S3C0G9 (ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495062 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 32  INRGARPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 72
           + RGA+PSIKDCGGLSALERAMEMGAITDEELFLLLTGSE
Sbjct: 736 LRRGAKPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE 775

[Close]

BLAST of HG10014519 vs. TAIR 10
Match: AT1G10870.1 (ARF-GAP domain 4 )

HSP 1 Score: 63.9 bits (154), Expect = 5.9e-11
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 27  FSYNFINRGARPSIKDCGGLSALERAMEMGAITDEELFLLL 68
           F+   + RGARPSI+D GGLS LERAMEMGAITDEELFLLL
Sbjct: 731 FAKILLRRGARPSIEDDGGLSVLERAMEMGAITDEELFLLL 771

[Close]

BLAST of HG10014519 vs. TAIR 10
Match: AT1G60860.1 (ARF-GAP domain 2 )

HSP 1 Score: 63.9 bits (154), Expect = 5.9e-11
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 27  FSYNFINRGARPSIKDCGGLSALERAMEMGAITDEELFLLL 68
           F+   + RGARPSI+D GGLS LERAMEMGAITDEELFLLL
Sbjct: 732 FAKVLLRRGARPSIEDGGGLSVLERAMEMGAITDEELFLLL 772

The following BLAST results are available for this feature:

BLAST of HG10014519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741047.1	3.2e-11	92.50	ADP-ribosylation factor GTPase-activating protein AGD4 isoform X4 [Cucumis sativ...	[more]
XP_031741046.1	3.2e-11	92.50	ADP-ribosylation factor GTPase-activating protein AGD4 isoform X2 [Cucumis sativ...	[more]
XP_008454718.1	3.2e-11	92.50	PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X...	[more]
XP_008454719.1	3.2e-11	92.50	PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X...	[more]
XP_011654489.1	3.2e-11	92.50	ADP-ribosylation factor GTPase-activating protein AGD4 isoform X1 [Cucumis sativ...	[more]

BLAST of HG10014519 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C6C3	8.2e-10	78.05	ADP-ribosylation factor GTPase-activating protein AGD2 OS=Arabidopsis thaliana O...	[more]
Q9SMX5	8.2e-10	78.05	ADP-ribosylation factor GTPase-activating protein AGD4 OS=Arabidopsis thaliana O...	[more]

BLAST of HG10014519 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BYT7	1.6e-11	92.50	ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X4 OS=Cucumi...	[more]
A0A0A0KJC8	1.6e-11	92.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G053060 PE=4 SV=1	[more]
A0A1S4E0Y6	1.6e-11	92.50	ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X3 OS=Cucumi...	[more]
A0A1S3C009	1.6e-11	92.50	ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X1 OS=Cucumi...	[more]
A0A1S3C0G9	1.6e-11	92.50	ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X2 OS=Cucumi...	[more]

BLAST of HG10014519 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10870.1	5.9e-11	78.05	ARF-GAP domain 4	[more]
AT1G60860.1	5.9e-11	78.05	ARF-GAP domain 2	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014519.1	HG10014519.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0046872	metal ion binding