HG10014503 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10014503
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr02: 12908760 .. 12909221 (-)
RNA-Seq ExpressionHG10014503
SyntenyHG10014503
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTATGGAATGCTTATAGGAGACATTCTCACCCTTTTCGTTTTAATGAGCAGTGGATTCTTCATAATGAATGTCGAGATATTGCCTCTCAATGTGTTTCGGTCAAGCCTGGAGGAGCTGAAAGTTCTCTTTAAAAATGTCTTACAAGCTATACTCAGAGGCTCTCTAAATGGGGTGGGTTGGCTAATAATCAACTAAGGTAAAAAACTACAGAATATTCAAAGAACCTATGAGGGCCCTTCTCCAATAAACTACATAATCATATATGAATCGAAAGATCAACTGCATCGTTTGATTTTGGAAGAAGAAATTTATTAGTGACAGGGATCTAAAGCTGATTGGTTAAAATGGGGAGACAAGAACACCGCTTGGTTTCACCACAAGGTTTCTCAAAGAAGGAAGAGGAACGAAGTCAAAGGTATTCTAGATACAGATGAGTCTGGTAGGATCAAGCGTTAG

mRNA sequence

ATGGGCTATGGAATGCTTATAGGAGACATTCTCACCCTTTTCGTTTTAATGAGCAGTGGATTCTTCATAATGAATGTCGAGATATTGCCTCTCAATGTGTTTCGGTCAAGCCTGGAGGAGCTGAAAGTTCTCTTTAAAAATGTCTTACAAGCTATACTCAGAGGCTCTCTAAATGGGGGATCTAAAGCTGATTGGTTAAAATGGGGAGACAAGAACACCGCTTGGTTTCACCACAAGGTTTCTCAAAGAAGGAAGAGGAACGAAGTCAAAGGTATTCTAGATACAGATGAGTCTGGTAGGATCAAGCGTTAG

Coding sequence (CDS)

ATGGGCTATGGAATGCTTATAGGAGACATTCTCACCCTTTTCGTTTTAATGAGCAGTGGATTCTTCATAATGAATGTCGAGATATTGCCTCTCAATGTGTTTCGGTCAAGCCTGGAGGAGCTGAAAGTTCTCTTTAAAAATGTCTTACAAGCTATACTCAGAGGCTCTCTAAATGGGGGATCTAAAGCTGATTGGTTAAAATGGGGAGACAAGAACACCGCTTGGTTTCACCACAAGGTTTCTCAAAGAAGGAAGAGGAACGAAGTCAAAGGTATTCTAGATACAGATGAGTCTGGTAGGATCAAGCGTTAG

Protein sequence

MGYGMLIGDILTLFVLMSSGFFIMNVEILPLNVFRSSLEELKVLFKNVLQAILRGSLNGGSKADWLKWGDKNTAWFHHKVSQRRKRNEVKGILDTDESGRIKR
Homology
BLAST of HG10014503 vs. NCBI nr
Match: XP_030942013.1 (uncharacterized protein LOC115967068 [Quercus lobata])

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 27  EILPLNVFRSSLEELKVLFKNVLQAILRGSL--NGGSKADWLKWGDKNTAWFHHKVSQRR 86
           E+  LN+    +EE+KVL K + +  LR  +  N  S+A W+K GD+NT +FH   S RR
Sbjct: 249 ELEMLNLLHEPVEEIKVLKKEINEVTLREEMMWNQRSRAVWVKCGDRNTKFFHETASNRR 308

Query: 87  KRNEVKGILDTD 97
           ++N +KG+ D +
Sbjct: 309 RKNRIKGLCDNE 320

BLAST of HG10014503 vs. NCBI nr
Match: XP_030487384.1 (uncharacterized protein LOC115704310 [Cannabis sativa])

HSP 1 Score: 58.2 bits (139), Expect = 5.0e-05
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 61 SKADWLKWGDKNTAWFHHKVSQRRKRNEVKGILDT 96
          S+A WL+WGD+NT +FHHK S RRK+NE+KG+ D+
Sbjct: 33 SRALWLQWGDRNTKYFHHKASSRRKKNEIKGLQDS 67

BLAST of HG10014503 vs. NCBI nr
Match: XP_017217082.1 (PREDICTED: uncharacterized protein LOC108194640 [Daucus carota subsp. sativus])

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-04
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 61  SKADWLKWGDKNTAWFHHKVSQRRKRNEVKGILDTDESGRIKR 104
           S+A WLK GDKNT +FHHK S R+K+NE+KG+ D D   ++++
Sbjct: 261 SRALWLKCGDKNTRFFHHKASSRKKKNEIKGLKDQDGCWQVEK 303

BLAST of HG10014503 vs. ExPASy TrEMBL
Match: A0A803P3X4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0

Query: 61  SKADWLKWGDKNTAWFHHKVSQRRKRNEVKGILD 95
           S+A WLKWGD+NT +FHHK S RRK+NE+KG+ D
Sbjct: 848 SRALWLKWGDRNTKYFHHKASSRRKKNEIKGLQD 881

BLAST of HG10014503 vs. ExPASy TrEMBL
Match: A0A7N2R0C3 (Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 27/68 (39.71%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 31  LNVFRSSLEELKVLFKNVLQAILRGSL--NGGSKADWLKWGDKNTAWFHHKVSQRRKRNE 90
           LN+   S EE++ L K + + +LR  +  N  S+A W+K+GD+NT +FH   + RR++N+
Sbjct: 786 LNLLHESAEEVQKLKKEINEVMLREEIMWNQRSRALWIKYGDRNTRFFHATANNRRRKNK 845

Query: 91  VKGILDTD 97
           ++GILD++
Sbjct: 846 IEGILDSE 853

BLAST of HG10014503 vs. ExPASy TrEMBL
Match: A0A803PWX1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.1e-05
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0

Query: 61  SKADWLKWGDKNTAWFHHKVSQRRKRNEVKGILD 95
           S+A WL+WGD+NT +FHHK S RRK+NE+KG+ D
Sbjct: 886 SRALWLQWGDRNTKYFHHKASSRRKKNEIKGLQD 919

BLAST of HG10014503 vs. ExPASy TrEMBL
Match: A0A803PV25 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.4e-05
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0

Query: 61  SKADWLKWGDKNTAWFHHKVSQRRKRNEVKGILD 95
           S+A WL+WGD+NT +FHHK S RRK+NE+KG+ D
Sbjct: 893 SRALWLQWGDRNTKYFHHKASARRKKNEIKGLQD 926

BLAST of HG10014503 vs. ExPASy TrEMBL
Match: A0A803Q3G0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.0e-05
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0

Query: 61 SKADWLKWGDKNTAWFHHKVSQRRKRNEVKGILD 95
          S+A WL+WGD+NT +FHHK S RRK+NE+KG+ D
Sbjct: 33 SRALWLQWGDRNTKYFHHKASARRKKNEIKGLHD 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030942013.11.3e-0540.28uncharacterized protein LOC115967068 [Quercus lobata][more]
XP_030487384.15.0e-0562.86uncharacterized protein LOC115704310 [Cannabis sativa][more]
XP_017217082.13.2e-0453.49PREDICTED: uncharacterized protein LOC108194640 [Daucus carota subsp. sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803P3X41.4e-0567.65Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7N2R0C31.4e-0539.71Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 ... [more]
A0A803PWX14.1e-0564.71Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PV255.4e-0564.71Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q3G07.0e-0564.71Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10014503.1HG10014503.1mRNA