HG10014438 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014438
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	photosynthetic NDH subunit of lumenal location 3, chloroplastic
Location	Chr02: 11378200 .. 11379080 (-)
RNA-Seq Expression	HG10014438
Synteny	HG10014438

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGTCTTGCAAATTTAAACGAGAAATTCTCTGCCATTCCCAACCTCCCAAAGCTTCAAAACACTCGTAAGAGACTCAAAATTACTGGGTTTCTCAAGAAACAAACAGATGTCTCTTCTCATCAAATCTCATTGCCAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATCGCTTCTGCTAACGAGTACTGGCTCGACGGTCCTTTGCCCGTTCCTTCTGTTTACAACAGTAAGCTTTCTGATTGAACAAGTTTGCTACTTTCTGTTCCTGTTTTTGTTTTTCTTATCTGTGTGCAAGTTGAAATTGAAAATTTCGAGTTGGTTTGGTTAGTTTGATAGTAGATAGTAAAGAATTTGAGATGAATTCTTTGTTACAGATATTGCGAATGAGAAAACAGGGACTCGATCGTTTCTGAAGACGGGGATATACATAGCTAACATAGGAACAGAAGGAAGGAAATACAGATTGAAAAAATATGCATTTGATCTTCTAGCTATGGCGGATTTGATTGGGAAAGATACTTTGAATTACGTCAGGAAGTATCTTCGACTCAAATCAACCTTCATGTACTACGATTTCGACAATGTTATCTCCGCAGCGGCAGATGATGAGAAGCAGCCTCTCGTTGATTTAGCGAACAGATTATTTGACAACTTCGAAAAGGTAAAATGTAGAGAAAAGTTTTACGAGTTTCTGCAGATGTATGCAAATTTTCAAGCTGAAGTACCTTCTCTTTTGTGTTTTGCAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAGACAACGCCAATACTTCAAGAAGTCATGGATAGGATGGCATAA

mRNA sequence

ATGGCTCGTCTTGCAAATTTAAACGAGAAATTCTCTGCCATTCCCAACCTCCCAAAGCTTCAAAACACTCGTAAGAGACTCAAAATTACTGGGTTTCTCAAGAAACAAACAGATGTCTCTTCTCATCAAATCTCATTGCCAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATCGCTTCTGCTAACGAGTACTGGCTCGACGGTCCTTTGCCCGTTCCTTCTGTTTACAACAATATTGCGAATGAGAAAACAGGGACTCGATCGTTTCTGAAGACGGGGATATACATAGCTAACATAGGAACAGAAGGAAGGAAATACAGATTGAAAAAATATGCATTTGATCTTCTAGCTATGGCGGATTTGATTGGGAAAGATACTTTGAATTACGTCAGGAAGTATCTTCGACTCAAATCAACCTTCATGTACTACGATTTCGACAATGTTATCTCCGCAGCGGCAGATGATGAGAAGCAGCCTCTCGTTGATTTAGCGAACAGATTATTTGACAACTTCGAAAAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAGACAACGCCAATACTTCAAGAAGTCATGGATAGGATGGCATAA

Coding sequence (CDS)

ATGGCTCGTCTTGCAAATTTAAACGAGAAATTCTCTGCCATTCCCAACCTCCCAAAGCTTCAAAACACTCGTAAGAGACTCAAAATTACTGGGTTTCTCAAGAAACAAACAGATGTCTCTTCTCATCAAATCTCATTGCCAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATCGCTTCTGCTAACGAGTACTGGCTCGACGGTCCTTTGCCCGTTCCTTCTGTTTACAACAATATTGCGAATGAGAAAACAGGGACTCGATCGTTTCTGAAGACGGGGATATACATAGCTAACATAGGAACAGAAGGAAGGAAATACAGATTGAAAAAATATGCATTTGATCTTCTAGCTATGGCGGATTTGATTGGGAAAGATACTTTGAATTACGTCAGGAAGTATCTTCGACTCAAATCAACCTTCATGTACTACGATTTCGACAATGTTATCTCCGCAGCGGCAGATGATGAGAAGCAGCCTCTCGTTGATTTAGCGAACAGATTATTTGACAACTTCGAAAAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAGACAACGCCAATACTTCAAGAAGTCATGGATAGGATGGCATAA

Protein sequence

MARLANLNEKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVSVALFGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA

Homology

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BLAST of HG10014438 vs. NCBI nr
Match: XP_004151964.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis sativus] >KGN57960.1 hypothetical protein Csa_009832 [Cucumis sativus])

HSP 1 Score: 401.0 bits (1029), Expect = 6.6e-108
Identity = 206/215 (95.81%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVSVAL 60
           MARLANLN KFSAIPNLPKLQN  KRLKITGFLKKQTDVSSHQISL RRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSV NNI NE+TGTRSFLKTGIYIANIGT+GRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

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BLAST of HG10014438 vs. NCBI nr
Match: XP_038899633.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 400.2 bits (1027), Expect = 1.1e-107
Identity = 203/215 (94.42%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVSVAL 60
           MARLANLN+KF+AIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISL RRLALTSLVSVAL
Sbjct: 1   MARLANLNQKFTAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKK 120
           FGNAS EIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKK
Sbjct: 61  FGNASLEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISA  +  KQPL+DLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISATEEGAKQPLIDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLEDAAKQKNLSETE+YYQQTTP+LQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETEAYYQQTTPLLQEVMDRMA 215

[Close]

BLAST of HG10014438 vs. NCBI nr
Match: XP_008454569.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis melo] >KAA0046447.1 photosynthetic NDH subunit of lumenal location 3 [Cucumis melo var. makuwa] >TYJ97766.1 photosynthetic NDH subunit of lumenal location 3 [Cucumis melo var. makuwa])

HSP 1 Score: 399.4 bits (1025), Expect = 1.9e-107
Identity = 205/215 (95.35%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVSVAL 60
           MARLANLN KFSAIPNLPKLQN  K+LKITGFLKKQTDVSSHQISL RRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSV NNIANE+TGTRSFLKTGIYIANIGT+GRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of HG10014438 vs. NCBI nr
Match: XP_022139520.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica charantia])

HSP 1 Score: 384.0 bits (985), Expect = 8.3e-103
Identity = 199/218 (91.28%), Postives = 204/218 (93.58%), Query Frame = 0


Query: 1   MARLANLN---EKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVS 60
           MARLANLN   +KFSAIP LPKLQN RKRLKI GFL KQT+VSSH  S  RRLALTS+VS
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAS EIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAD EKQPL +LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]

BLAST of HG10014438 vs. NCBI nr
Match: KAG7015220.1 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 379.0 bits (972), Expect = 2.7e-101
Identity = 196/218 (89.91%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MARLANLN---EKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVS 60
           MARLANLN   EKFSAIP L KLQ TRKR KITG L+KQ +VSSH+ISL RRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA  EIASANEYWLDGPLP+PSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA D EKQPL DLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of HG10014438 vs. ExPASy Swiss-Prot
Match: Q9SGH4 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL3 PE=1 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.0e-68
Identity = 131/220 (59.55%), Postives = 166/220 (75.45%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTRKRLKITGFLKKQTD--VSSHQISLPRRLALTSLVSV 60
           MA   +LN   + +P+LPKL  +RK  K +GF  ++T+       + + RR+ L   VS+
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSI 60

Query: 61  AL---FGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRK 120
            L    G  +  +A  N +W+DGPLP+P +YNNI NEKTGTR+F+K G+Y+A+IGT+GR 
Sbjct: 61  GLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRM 120

Query: 121 YRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLAN 180
           YR+KK AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAAA ++KQPL DLAN
Sbjct: 121 YRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLAN 180

Query: 181 RLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           RLFDNFEKLEDAAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 RLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of HG10014438 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 79.7 bits (195), Expect = 4.4e-14
Identity = 55/181 (30.39%), Postives = 91/181 (50.28%), Query Frame = 0


Query: 39  VSSHQISLPRRLALTSLVSVALFGNASPEIASANEYWLD-GPLPVPSVYNNIANEKTG-T 98
           V + Q     R ++  LV+  L G +  +   A+   +  GP P PS       + +   
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQA 102

Query: 99  RSF---LKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYY 158
           R F   LK   Y+  +       R K+ A D++ +  LI +    YV+  LR K++++ Y
Sbjct: 103 RDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRY 162

Query: 159 DFDNVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDR 215
           D + +IS+   DEK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ +
Sbjct: 163 DLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAK 222

[Close]

BLAST of HG10014438 vs. ExPASy Swiss-Prot
Match: Q41932 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-12
Identity = 54/182 (29.67%), Postives = 87/182 (47.80%), Query Frame = 0


Query: 40  SSHQISLPR--RLALTSLVSVALFGNA--SPEIASANEYWLDGPLPVPSVYNNIANEKTG 99
           +   +S+P   R ++  LV+  L G +      A A    + GP P+PS      +    
Sbjct: 49  AQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGTDNSDQ 108

Query: 100 TRSF---LKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMY 159
            R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL+++++ 
Sbjct: 109 ARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLR 168

Query: 160 YDFDNVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMD 215
           YD + VISA   +EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L  V+ 
Sbjct: 169 YDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLA 228

[Close]

BLAST of HG10014438 vs. ExPASy Swiss-Prot
Match: P83646 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 62/221 (28.05%), Postives = 105/221 (47.51%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVSVAL 60
           MA +  L++    +P  P+    R RL +      + D ++  +   RR A+  LV+  +
Sbjct: 5   MASMTGLSQGVQ-LPAGPRRAGGRSRLAVV-----RADAAAADVQTGRR-AVLGLVATGI 64

Query: 61  FGNASPEIA---SANEYWLDGPLP----VPSVYNNIANEKTGTRSFLKTGIYIANIGTEG 120
            G A  + A   +A    L  P P    +P   N  +++   T   L+   Y+  +    
Sbjct: 65  AGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLN--SDQARDTDLPLRERFYLQPLPPAE 124

Query: 121 RKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDL 180
              R K+ A D++ +  LI K    +VR  LRL+++++ YD   VI++   DEK+ L DL
Sbjct: 125 AAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDL 184

Query: 181 ANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
             +LF   + L+ AAK K+  E E YY  T   L +V+ ++
Sbjct: 185 TGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of HG10014438 vs. ExPASy Swiss-Prot
Match: Q0D5P8 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 62/221 (28.05%), Postives = 105/221 (47.51%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVSVAL 60
           MA +  L++    +P  P+    R RL +      + D ++  +   RR A+  LV+  +
Sbjct: 5   MASMTGLSQGVQ-LPAGPRRAGGRSRLAVV-----RADAAAADVQTGRR-AVLGLVATGI 64

Query: 61  FGNASPEIA---SANEYWLDGPLP----VPSVYNNIANEKTGTRSFLKTGIYIANIGTEG 120
            G A  + A   +A    L  P P    +P   N  +++   T   L+   Y+  +    
Sbjct: 65  AGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLN--SDQARDTDLPLRERFYLQPLPPAE 124

Query: 121 RKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDL 180
              R K+ A D++ +  LI K    +VR  LRL+++++ YD   VI++   DEK+ L DL
Sbjct: 125 AAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDL 184

Query: 181 ANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
             +LF   + L+ AAK K+  E E YY  T   L +V+ ++
Sbjct: 185 TGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of HG10014438 vs. ExPASy TrEMBL
Match: A0A0A0L7N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.2e-108
Identity = 206/215 (95.81%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVSVAL 60
           MARLANLN KFSAIPNLPKLQN  KRLKITGFLKKQTDVSSHQISL RRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSV NNI NE+TGTRSFLKTGIYIANIGT+GRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of HG10014438 vs. ExPASy TrEMBL
Match: A0A5A7TX10 (Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00750 PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 9.3e-108
Identity = 205/215 (95.35%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVSVAL 60
           MARLANLN KFSAIPNLPKLQN  K+LKITGFLKKQTDVSSHQISL RRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSV NNIANE+TGTRSFLKTGIYIANIGT+GRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of HG10014438 vs. ExPASy TrEMBL
Match: A0A1S3BZP3 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494958 PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 9.3e-108
Identity = 205/215 (95.35%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVSVAL 60
           MARLANLN KFSAIPNLPKLQN  K+LKITGFLKKQTDVSSHQISL RRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSV NNIANE+TGTRSFLKTGIYIANIGT+GRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of HG10014438 vs. ExPASy TrEMBL
Match: A0A6J1CCI9 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010414 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.0e-103
Identity = 199/218 (91.28%), Postives = 204/218 (93.58%), Query Frame = 0


Query: 1   MARLANLN---EKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVS 60
           MARLANLN   +KFSAIP LPKLQN RKRLKI GFL KQT+VSSH  S  RRLALTS+VS
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAS EIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAD EKQPL +LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]

BLAST of HG10014438 vs. ExPASy TrEMBL
Match: A0A6J1FHS2 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445892 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.2e-101
Identity = 195/218 (89.45%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MARLANLN---EKFSAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLPRRLALTSLVS 60
           MARLANLN   EKFSAIP L KLQ TRKR KI G L+KQ +VSSH++SL RRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAS EIASANEYWLDGPLP+PSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA D EKQPL DLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of HG10014438 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 259.2 bits (661), Expect = 2.9e-69
Identity = 131/220 (59.55%), Postives = 166/220 (75.45%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTRKRLKITGFLKKQTD--VSSHQISLPRRLALTSLVSV 60
           MA   +LN   + +P+LPKL  +RK  K +GF  ++T+       + + RR+ L   VS+
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSI 60

Query: 61  AL---FGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRK 120
            L    G  +  +A  N +W+DGPLP+P +YNNI NEKTGTR+F+K G+Y+A+IGT+GR 
Sbjct: 61  GLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRM 120

Query: 121 YRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEKQPLVDLAN 180
           YR+KK AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAAA ++KQPL DLAN
Sbjct: 121 YRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLAN 180

Query: 181 RLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           RLFDNFEKLEDAAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 RLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of HG10014438 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 81.6 bits (200), Expect = 8.2e-16
Identity = 55/180 (30.56%), Postives = 90/180 (50.00%), Query Frame = 0


Query: 39  VSSHQISLPRRLALTSLVSVALFGNASPEIASANEYWLD-GPLPVPSVYNNIANEKTGTR 98
           V + Q     R ++  LV+  L G +  +   A+   +  GP P PS      +     R
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPGTDNSDQAR 102

Query: 99  SF---LKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYD 158
            F   LK   Y+  +       R K+ A D++ +  LI +    YV+  LR K++++ YD
Sbjct: 103 DFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYD 162

Query: 159 FDNVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
            + +IS+   DEK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 163 LNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of HG10014438 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-15
Identity = 55/181 (30.39%), Postives = 91/181 (50.28%), Query Frame = 0


Query: 39  VSSHQISLPRRLALTSLVSVALFGNASPEIASANEYWLD-GPLPVPSVYNNIANEKTG-T 98
           V + Q     R ++  LV+  L G +  +   A+   +  GP P PS       + +   
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQA 102

Query: 99  RSF---LKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYY 158
           R F   LK   Y+  +       R K+ A D++ +  LI +    YV+  LR K++++ Y
Sbjct: 103 RDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRY 162

Query: 159 DFDNVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDR 215
           D + +IS+   DEK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ +
Sbjct: 163 DLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAK 222

[Close]

BLAST of HG10014438 vs. TAIR 10
Match: AT4G05180.1 (photosystem II subunit Q-2 )

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-13
Identity = 54/182 (29.67%), Postives = 87/182 (47.80%), Query Frame = 0


Query: 40  SSHQISLPR--RLALTSLVSVALFGNA--SPEIASANEYWLDGPLPVPSVYNNIANEKTG 99
           +   +S+P   R ++  LV+  L G +      A A    + GP P+PS      +    
Sbjct: 49  AQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGTDNSDQ 108

Query: 100 TRSF---LKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMY 159
            R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL+++++ 
Sbjct: 109 ARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLR 168

Query: 160 YDFDNVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMD 215
           YD + VISA   +EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L  V+ 
Sbjct: 169 YDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLA 228

[Close]

BLAST of HG10014438 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11
Identity = 43/168 (25.60%), Postives = 78/168 (46.43%), Query Frame = 0


Query: 48  RRLALTSLVSVALFGNASPEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIA 107
           RR  LTSL++  + G A+                     + +A EK GTRSF+K   ++ 
Sbjct: 43  RRRTLTSLITFTVIGGATS--------------------SALAQEKWGTRSFIKEKYFMP 102

Query: 108 NIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADDEK 167
            +  E    R+K+ A  L  M +++   +  YV  Y+RLK  ++  D  N ++   +  +
Sbjct: 103 GLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRR 162

Query: 168 QPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
              V  AN L +N  +L+   +   + E+  YY++T   +  V++ +A
Sbjct: 163 NDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

The following BLAST results are available for this feature:

BLAST of HG10014438 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151964.1	6.6e-108	95.81	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis sativus...	[more]
XP_038899633.1	1.1e-107	94.42	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Benincasa hispi...	[more]
XP_008454569.1	1.9e-107	95.35	PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucu...	[more]
XP_022139520.1	8.3e-103	91.28	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica chara...	[more]
KAG7015220.1	2.7e-101	89.91	Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyr...	[more]

BLAST of HG10014438 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGH4	4.0e-68	59.55	Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis t...	[more]
Q9XFT3	4.4e-14	30.39	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q41932	5.4e-12	29.67	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P83646	1.2e-11	28.05	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ...	[more]
Q0D5P8	1.2e-11	28.05	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonic...	[more]

BLAST of HG10014438 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7N1	3.2e-108	95.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1	[more]
A0A5A7TX10	9.3e-108	95.35	Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BZP3	9.3e-108	95.35	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucumis melo ...	[more]
A0A6J1CCI9	4.0e-103	91.28	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica cha...	[more]
A0A6J1FHS2	2.2e-101	89.45	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita mos...	[more]

BLAST of HG10014438 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01440.1	2.9e-69	59.55	PsbQ-like 1	[more]
AT4G21280.1	8.2e-16	30.56	photosystem II subunit QA	[more]
AT4G21280.2	3.1e-15	30.39	photosystem II subunit QA	[more]
AT4G05180.1	3.8e-13	29.67	photosystem II subunit Q-2	[more]
AT1G14150.1	1.2e-11	25.60	PsbQ-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 77..215 e-value: 7.7E-46 score: 157.8
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 105..215
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 22..215 e-value: 6.1E-56 score: 189.3
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 1..215
None	No IPR available	PANTHER	PTHR33399:SF2	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC	coord: 1..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014438.1	HG10014438.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity