HG10014427 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014427
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	glycine-rich RNA-binding protein 4, mitochondrial
Location	Chr02: 11270284 .. 11272750 (+)
RNA-Seq Expression	HG10014427
Synteny	HG10014427

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCAGATCGGCGGCGGTGGTGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACCGGAGCCCAGCATGAACGCTTTCCTTTCTGGTCGCCTGTTCTCGAGCGCTTCTACTTCAAGTTTCATTCCTCCGCCGCTCCCTCCGTCGGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGTAACTCGTTCTTTCTTAATCTAGATGCCTTACGTTTATTTCCTCCAACAATCATGTATTTGCGTTTTGTATATCGCTCCTTTTTTGTTGTGAAACTGCTAACGTTATTGTGCTTTATGGTTTCACTCCCGCCAAATTATTTCTATGTGGCATTGGTGTTGATATCTATTGGAGTCATAGGAATTTCATTTTTCCTGTTCTTTTGGTTCTATTTTAGCGATCTAGTAATGGAGAAACGCTTAGTTACGTTTCTTCTACTTTTTTTAACTTTCAATGCTCAATTTGTTTGGTATCTTTTCAGTTAGTGTTGAGACATCTTTTTGAAATTTTATGCCCCTCCCCGTTCTTAAATTTGCTTTTCCCCTTCAGTTTTGGATTATCGAGATGCATCCGTATATTAATCGAGTTTCTTCATGGGAAGGTTGATCTTTTTTAACGATTGATTCTTGGAAGCTGGAATTAAAATTTGGCTATGAATGTGTTGAGCTGTCTTTCTGTTTATTTTCCACTAGAGGAATTATTTTGATTTTTAATATAGAATTTTGAATTATTGTTGTTTTTCTAAAAAAAAGTGAACCATGTTTGTGATGGAATGTCGATGTTTATCTTCTTTCAGGCCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCAAAGTTTGGAGAAGTTGTTCATGGTCTGTTCATTCGCTTTACTTATGTTTGATTTGTGCCCAGGCTTGAAAATTTTCCTTCTTTGACCTGTTGTTTTCCCTTCTGTTTACAGCAAGAGTCGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTCCTTGTTTTCTCATTTGAGATGTTGAAGTTTATTTGCTGTGTAGTGTTATCCACATTTATACGATATCCCTGGATCTTGAACTCACGTTTTGCGCATGTGTTAGCTGAGAGGCTAAGGTTGTTTACTACCCTCCAAATAGATACACTAAGTAACGAGAAAGAAAATGAATTAGAATATGTCTTACTGTGTTAATTGGCATATCACGAAATAAGTATAAGATTCCTGAATATGGTGTGTAGTGTTATCCACATATGTGTACATGATAGCAGTGTAGGGTATTTGATTGGCAACATATAGAACATATTACAACTTACAACACTCAACTGCTGACCATCATACATGCTTTGCATTCTTGAAAGTTGAATCTTATGGTACCTGGCTTAGCTGATAAATCTGCTGATTACTTGGGGGTGCAATTTCTCCTTTATTCTCATGTGCAATGGTGCTTGCTTTATGTAGTTCTTTCAAACATAGTAATATTTGTGGAAATTCATAAATTTATTTGTAGGGTTTTCTGCTATAATTTGAACCTTTTGCCATTTGAGCAACATGGTGGTGAGAGTAGTTTCATTTTTTTTTTTTTGGGGGGGGGGGGATCTTTTTAAAATTTCTACATTGAATAGATGTTTAAGTTTAGCTGGTCCGAACACTCACAAATACAACCTACACACAGTGATTACATTTTAATTGAATCTTGTAAAGAGTATCACTTTTGTGAAAATATTATTTGTCCTATAAGTTGTACAATTCTGTCCCTGAATTGTAAAATTATTATTACTAATTTACTATTATCATCAATTTTTAGAACTATTGCCAATGTGTGGCTCAATGGTTAGTGAATCTCTTATAGTCAAACGCTCTAGAAAGAACAGACTTGACAATGCAAATTGGTTGTTATTGACCTATTAATGGATCCATGTTTCTTTTAATTCCATTTTGTCAAACTATGTAGACTATATATATTAACTTCCCTTGGTTTGGTTCATTGTAAAATTTGACATTTCAATAGAATACTCCTGTAATTAGCCGTTCAAATTAATTTGATTCCATGTATTTTACCTCCCTGATCTCCAATTAAAACATCTACTCTGATAAACTATACAAATTAGAATGCTTGGAAATAAGATCTACGAAACTGGGTTGATGCTTGCCTTTGAACACGTGCAATTTGTTTATTAATAATGATGATGAATCTCTTTTTGTTTTCCCTCTTAATGTTATCCAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGAACAATGGTCTCCCTCCATATGGCCGTCAATGA

mRNA sequence

ATGGCTCTCAGATCGGCGGCGGTGGTGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACCGGAGCCCAGCATGAACGCTTTCCTTTCTGGTCGCCTGTTCTCGAGCGCTTCTACTTCAAGTTTCATTCCTCCGCCGCTCCCTCCGTCGGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCAAAGTTTGGAGAAGTTGTTCATGCAAGAGTCGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGAACAATGGTCTCCCTCCATATGGCCGTCAATGA

Coding sequence (CDS)

ATGGCTCTCAGATCGGCGGCGGTGGTGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACCGGAGCCCAGCATGAACGCTTTCCTTTCTGGTCGCCTGTTCTCGAGCGCTTCTACTTCAAGTTTCATTCCTCCGCCGCTCCCTCCGTCGGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCAAAGTTTGGAGAAGTTGTTCATGCAAGAGTCGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGAACAATGGTCTCCCTCCATATGGCCGTCAATGA

Protein sequence

MALRSAAVVAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSMNAFLSGRLFSSASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNGLPPYGRQ

Homology

[Close]

BLAST of HG10014427 vs. NCBI nr
Match: XP_038896843.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 322.0 bits (824), Expect = 3.1e-84
Identity = 161/172 (93.60%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MALRSAAVVAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSMNAFLSGRLFSSASTSSF 60
           MALRSAA  APRSLRRLITGTSTRTLPIIS  IHDWEK EPS NAFLSGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISQTIHDWEKLEPSTNAFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE+PEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNGLPPYGRQ 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNG  P+G Q
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNGFRPHGHQ 172

[Close]

BLAST of HG10014427 vs. NCBI nr
Match: XP_008454580.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 5.5e-81
Identity = 157/173 (90.75%), Postives = 161/173 (93.06%), Query Frame = 0


Query: 1   MALRSAAVVAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSMNAFLSGRLFSSASTSSF 60
           MALRSAA  APRSLR+LITGTSTRTLPIIS AIHDWEKP PS N+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE-NNGLPPYGRQ 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE NNG  PYGRQ
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRQ 173

[Close]

BLAST of HG10014427 vs. NCBI nr
Match: XP_022976594.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 310.8 bits (795), Expect = 7.2e-81
Identity = 154/172 (89.53%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MALRSAAVVAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSMNAFLSGRLFSSASTSSF 60
           MALRSAA  APRSLRRLITGTS RTLP+   AIHD EKP P+ NAF+SGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSA QRE+PEPSTNLFVSGLSKRTTTEKLHE FAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNGLPPYGRQ 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE+N +PPYGRQ
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGRQ 172

[Close]

BLAST of HG10014427 vs. NCBI nr
Match: XP_004151968.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN57946.1 hypothetical protein Csa_009766 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 1.6e-80
Identity = 158/173 (91.33%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MALRSAAVVAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSMNAFLSGRLFSSASTSSF 60
           MALRSAA  APRSLR+LIT TSTRTLPIIS AIHDWEKPEPS   FLSGRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHEAFAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE-NNGLPPYGRQ 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE NNG  PYGR+
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRR 173

[Close]

BLAST of HG10014427 vs. NCBI nr
Match: KAA0063485.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK25992.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 309.3 bits (791), Expect = 2.1e-80
Identity = 156/172 (90.70%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MALRSAAVVAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSMNAFLSGRLFSSASTSSF 60
           MALRSAA  APRSLR+LITGTSTRTLPIIS AIHDWEKP PS N+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE-NNGLPPYGR 172
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE NNG  PYGR
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR 172

[Close]

BLAST of HG10014427 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.1e-39
Identity = 91/151 (60.26%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 26  LPIISHAIHDWEKPEPSMNAFLSGRLF-SSASTSSFIPPPLPPSAQQREKPEPSTNLFVS 85
           LP IS A+ +       +      RLF S+AS  SF+ P        R + EPSTNLFVS
Sbjct: 7   LPAISRAVTEVASAPVGLR-----RLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS 66

Query: 86  GLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKF 145
           GLSKRTT+E L  AFA+FGEV  A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKF
Sbjct: 67  GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKF 126

Query: 146 LDGWVIFAEYARPR------PPPENNGLPPY 170
           LDGWVIFAEYARPR       P  N   PPY
Sbjct: 127 LDGWVIFAEYARPREQSQSYQPQNNMSRPPY 152

[Close]

BLAST of HG10014427 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.4e-18
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 47  LSGRLFSSA-STSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV 106
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           +H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of HG10014427 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.8e-14
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 75  PEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAA 134
           P  +  LF++GLS  T+ + L  AF  FGE+V  +++ D+++  SKG+ F++Y T E A 
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337

Query: 135 KGIEGMDGKFLDGWVIFAEYARPRPPPENNGLPPYG 171
             ++ M+GK ++GW+I  + A+ +P  +N   P +G
Sbjct: 338 TALKEMNGKIINGWMIVVDVAKTKPFRQNRSQPSFG 373

[Close]

BLAST of HG10014427 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-13
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 137
           ++ LF+ GLS  TT + L EAF+K G+VV A++V DRV+  SKGFGFV +A+ ++A K +
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 138 EGMDGKFLDGWVIFAEYARPRPPPENNGLPPYGR 172
              +G+ L+G  IF +YA+ +      G  P  R
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIAR 126

[Close]

BLAST of HG10014427 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 67  PSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVK 126
           PS  Q  +   S+ LF+ G++     + L EAF K+GEVV  RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNGLPPYG 171
           + + E A+  I+ +DG+ L G V+   YA  R      G   YG
Sbjct: 88  FTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGGGFGGGGYG 131

[Close]

BLAST of HG10014427 vs. ExPASy TrEMBL
Match: A0A1S3C066 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494967 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.7e-81
Identity = 157/173 (90.75%), Postives = 161/173 (93.06%), Query Frame = 0


Query: 1   MALRSAAVVAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSMNAFLSGRLFSSASTSSF 60
           MALRSAA  APRSLR+LITGTSTRTLPIIS AIHDWEKP PS N+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE-NNGLPPYGRQ 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE NNG  PYGRQ
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRQ 173

[Close]

BLAST of HG10014427 vs. ExPASy TrEMBL
Match: A0A6J1INZ4 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476943 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.5e-81
Identity = 154/172 (89.53%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MALRSAAVVAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSMNAFLSGRLFSSASTSSF 60
           MALRSAA  APRSLRRLITGTS RTLP+   AIHD EKP P+ NAF+SGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSA QRE+PEPSTNLFVSGLSKRTTTEKLHE FAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNGLPPYGRQ 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE+N +PPYGRQ
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGRQ 172

[Close]

BLAST of HG10014427 vs. ExPASy TrEMBL
Match: A0A0A0LD10 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.7e-81
Identity = 158/173 (91.33%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MALRSAAVVAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSMNAFLSGRLFSSASTSSF 60
           MALRSAA  APRSLR+LIT TSTRTLPIIS AIHDWEKPEPS   FLSGRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHEAFAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE-NNGLPPYGRQ 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE NNG  PYGR+
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRR 173

[Close]

BLAST of HG10014427 vs. ExPASy TrEMBL
Match: A0A5D3DR24 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold668G00050 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.0e-80
Identity = 156/172 (90.70%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MALRSAAVVAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSMNAFLSGRLFSSASTSSF 60
           MALRSAA  APRSLR+LITGTSTRTLPIIS AIHDWEKP PS N+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE-NNGLPPYGR 172
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE NNG  PYGR
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR 172

[Close]

BLAST of HG10014427 vs. ExPASy TrEMBL
Match: A0A6J1FB41 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111443707 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.5e-80
Identity = 155/172 (90.12%), Postives = 161/172 (93.60%), Query Frame = 0


Query: 1   MALRSAAVVAPRSLRRLITGTSTRTLPIISHAIHDWEKP-EPSMNAFLSGRLFSSASTSS 60
           MALRSAA  APRSLRRLITGTS RTLPI   AIHD EKP  P+ NAF+SGRLFSSASTSS
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSAQQRE+PEPSTNLFVSGLSKRTTTEKL+EAFAKFGEVVHARVVTDRVTGYS
Sbjct: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNGLPPYGR 172
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE+N +PPYGR
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVPPYGR 172

[Close]

BLAST of HG10014427 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 162.5 bits (410), Expect = 2.9e-40
Identity = 91/151 (60.26%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 26  LPIISHAIHDWEKPEPSMNAFLSGRLF-SSASTSSFIPPPLPPSAQQREKPEPSTNLFVS 85
           LP IS A+ +       +      RLF S+AS  SF+ P        R + EPSTNLFVS
Sbjct: 7   LPAISRAVTEVASAPVGLR-----RLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS 66

Query: 86  GLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKF 145
           GLSKRTT+E L  AFA+FGEV  A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKF
Sbjct: 67  GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKF 126

Query: 146 LDGWVIFAEYARPR------PPPENNGLPPY 170
           LDGWVIFAEYARPR       P  N   PPY
Sbjct: 127 LDGWVIFAEYARPREQSQSYQPQNNMSRPPY 152

[Close]

BLAST of HG10014427 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-25
Identity = 63/116 (54.31%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 45  AFLSGRLFSSASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGE 104
           AF+S      A +SS +    P    +R     S  LFVSGLS+ TT EKL +AFA FG+
Sbjct: 2   AFVSSFRRLVAGSSSLLSS--PSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQ 61

Query: 105 VVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPP 161
           +V ARV+TDR +G SKGFGFV YAT+EDA K    M+ KFLDGWVIF + ARPR P
Sbjct: 62  LVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREP 115

[Close]

BLAST of HG10014427 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-19
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 47  LSGRLFSSA-STSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV 106
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           +H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of HG10014427 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-15
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 75  PEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAA 134
           P  +  LF++GLS  T+ + L  AF  FGE+V  +++ D+++  SKG+ F++Y T E A 
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337

Query: 135 KGIEGMDGKFLDGWVIFAEYARPRPPPENNGLPPYG 171
             ++ M+GK ++GW+I  + A+ +P  +N   P +G
Sbjct: 338 TALKEMNGKIINGWMIVVDVAKTKPFRQNRSQPSFG 373

[Close]

BLAST of HG10014427 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 78.2 bits (191), Expect = 7.3e-15
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 137
           ++ LF+ GLS  TT + L EAF+K G+VV A++V DRV+  SKGFGFV +A+ ++A K +
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 138 EGMDGKFLDGWVIFAEYARPRPPPENNGLPPYGR 172
              +G+ L+G  IF +YA+ +      G  P  R
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIAR 126

The following BLAST results are available for this feature:

BLAST of HG10014427 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896843.1	3.1e-84	93.60	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]
XP_008454580.1	5.5e-81	90.75	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
XP_022976594.1	7.2e-81	89.53	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima]	[more]
XP_004151968.1	1.6e-80	91.33	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN5...	[more]
KAA0063485.1	2.1e-80	90.70	glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK25992.1 glycin...	[more]

BLAST of HG10014427 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	4.1e-39	60.26	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	2.4e-18	46.90	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q8L440	7.8e-14	35.42	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FFZ6	1.0e-13	42.55	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FNR1	1.7e-13	40.38	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of HG10014427 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C066	2.7e-81	90.75	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1INZ4	3.5e-81	89.53	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxim...	[more]
A0A0A0LD10	7.7e-81	91.33	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV...	[more]
A0A5D3DR24	1.0e-80	90.70	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1FB41	8.5e-80	90.12	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita mosch...	[more]

BLAST of HG10014427 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54580.1	2.9e-40	60.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	7.7e-25	54.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	1.7e-19	46.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	5.6e-15	35.42	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	7.3e-15	42.55	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 80..153 e-value: 2.6E-24 score: 96.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 81..147 e-value: 6.9E-20 score: 70.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 79..157 score: 18.444448
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 66..172 e-value: 2.7E-29 score: 104.0
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 50..165
None	No IPR available	PANTHER	PTHR15241:SF280	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE	coord: 50..165
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 60..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014427.1	HG10014427.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080156	mitochondrial mRNA modification
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding