Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCATCTTTTGGCTCTATTATTGCTTCTCTTTTCGGTTGTAGAGAGGTAGAGCTTAGTCCTGTTTGTGCTGAAGCTTTTGCTGTCTTTGAAAGTCTTCGTTTAGTGGATCGGATGGACCTCCAACGTCTGCTTGTCCTGTCTGATTCATTTGCAGTCATTCGTATGATCAATGGGTTCTCGGGCATTGAAGCGGATGTAGCAAACTTGATTGTTGACATAAAGAAGTTGGCTACTTCTTTTTCATCGGTGATTTTGCAGCATGTGTCTCATTCTCACAATTCTATAGCTCATTCTCTAGTTAGGATGAGGTTTATGGGATTGTATGGTTTGATTCTTAAGGGTGCTCTTACAAAGGTATCTTAG mRNA sequence
ATGGAATCATCTTTTGGCTCTATTATTGCTTCTCTTTTCGGTTGTAGAGAGGTAGAGCTTAGTCCTGTTTGTGCTGAAGCTTTTGCTGTCTTTGAAAGTCTTCGTTTAGTGGATCGGATGGACCTCCAACGTCTGCTTGTCCTGTCTGATTCATTTGCAGTCATTCGTATGATCAATGGGTTCTCGGGCATTGAAGCGGATGTAGCAAACTTGATTGTTGACATAAAGAAGTTGGCTACTTCTTTTTCATCGGTGATTTTGCAGCATGTGTCTCATTCTCACAATTCTATAGCTCATTCTCTAGTTAGGATGAGGTTTATGGGATTGTATGGTTTGATTCTTAAGGGTGCTCTTACAAAGGTATCTTAG Coding sequence (CDS)
ATGGAATCATCTTTTGGCTCTATTATTGCTTCTCTTTTCGGTTGTAGAGAGGTAGAGCTTAGTCCTGTTTGTGCTGAAGCTTTTGCTGTCTTTGAAAGTCTTCGTTTAGTGGATCGGATGGACCTCCAACGTCTGCTTGTCCTGTCTGATTCATTTGCAGTCATTCGTATGATCAATGGGTTCTCGGGCATTGAAGCGGATGTAGCAAACTTGATTGTTGACATAAAGAAGTTGGCTACTTCTTTTTCATCGGTGATTTTGCAGCATGTGTCTCATTCTCACAATTCTATAGCTCATTCTCTAGTTAGGATGAGGTTTATGGGATTGTATGGTTTGATTCTTAAGGGTGCTCTTACAAAGGTATCTTAG Protein sequence
MESSFGSIIASLFGCREVELSPVCAEAFAVFESLRLVDRMDLQRLLVLSDSFAVIRMINGFSGIEADVANLIVDIKKLATSFSSVILQHVSHSHNSIAHSLVRMRFMGLYGLILKGALTKVS
Homology
BLAST of HG10014410 vs. ExPASy TrEMBL
Match:
A0A328DDQ2 (CCHC-type domain-containing protein OS=Cuscuta australis OX=267555 GN=DM860_012102 PE=4 SV=1)
HSP 1 Score: 53.1 bits (126), Expect = 9.2e-04
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0
Query: 22 PVCAEAFAVFESLRLVDRMDLQRLLVLSDSFAVIRMIN--GFSGIEADVANLIVDIKKLA 81 P+ AEA A E+L + + +Q ++ SD F V+ IN G S + +LI D K L Sbjct: 578 PLLAEAMACRETLSWLKSLGVQVAVIFSDCFRVVEAINDSGVSDCASYFGSLIDDCKALM 637 Query: 82 TSFSSVILQHVSHSHNSIAHSLVR 104 SF SV++ HV S N +AH+L R Sbjct: 638 ASFESVLVSHVRRSLNVVAHTLAR 661
BLAST of HG10014410 vs. ExPASy TrEMBL
Match:
A0A328DZR7 (F-box domain-containing protein OS=Cuscuta australis OX=267555 GN=DM860_010737 PE=4 SV=1)
HSP 1 Score: 53.1 bits (126), Expect = 9.2e-04
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0
Query: 22 PVCAEAFAVFESLRLVDRMDLQRLLVLSDSFAVIRMIN--GFSGIEADVANLIVDIKKLA 81 P+ AEA A E+L + + +Q ++ SD F V+ IN G S + +LI D K L Sbjct: 504 PLLAEAMACRETLSWLKSLGVQVAVIFSDCFRVVEAINDSGVSDCASYFGSLIDDCKALM 563 Query: 82 TSFSSVILQHVSHSHNSIAHSLVR 104 SF SV++ HV S N +AH+L R Sbjct: 564 ASFESVLVSHVRRSLNVVAHTLAR 587
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A328DDQ2 9.2e-04 39.29 CCHC-type domain-containing protein OS=Cuscuta australis OX=267555 GN=DM860_0121... [more]
A0A328DZR7 9.2e-04 39.29 F-box domain-containing protein OS=Cuscuta australis OX=267555 GN=DM860_010737 P... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
A T G G A A T C A T C T T T T G G C T C T A T T A T T G C T T C T C T T T T C G G T T G T A G A G A G G T A G A G C T T A G T C C T G T T T G T G C T G A A G C T T T T G C T G T C T T T G A A A G T C T T C G T T T A G T G G A T C G G A T G G A C C T C C A A C G T C T G C T T G T C C T G T C T G A T T C A T T T G C A G T C A T T C G T A T G A T C A A T G G G T T C T C G G G C A T T G A A G C G G A T G T A G C A A A C T T G A T T G T T G A C A T A A A G A A G T T G G C T A C T T C T T T T T C A T C G G T G A T T T T G C A G C A T G T G T C T C A T T C T C A C A A T T C T A T A G C T C A T T C T C T A G T T A G G A T G A G G T T T A T G G G A T T G T A T G G T T T G A T T C T T A A G G G T G C T C T T A C A A A G G T A T C T T A G 50 100 150 200 250 300 350 Expect = 9.4E-11 / Score = 43.9 Expect = 6.9E-14 / Score = 51.7 Expect = 4.95088E-11 / Score = 53.8572 Score = Sequence G3DSA:3.30.420.10 PF13456 cd06222 SSF53098
IPR Term IPR Description Source Source Term Source Description Alignment
IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 3..106 e-value: 9.4E-11 score: 43.9
IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 21..104 e-value: 6.9E-14 score: 51.7
IPR044730 Ribonuclease H-like domain, plant type CDD cd06222 RNase_H_like coord: 13..103 e-value: 4.95088E-11 score: 53.8572
IPR012337 Ribonuclease H-like superfamily SUPERFAMILY 53098 Ribonuclease H-like coord: 19..107
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676
nucleic acid binding
molecular_function
GO:0004523
RNA-DNA hybrid ribonuclease activity