HG10014399 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014399
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Dynein light chain
Location	Chr02: 10683045 .. 10683511 (-)
RNA-Seq Expression	HG10014399
Synteny	HG10014399

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAAGGAAAAGCAATCATCGGAGAGACGGATATGTTGCAGGCCATGCAACAGGACGCTCTGGACCTTGCGGCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACTGACATTGCCCGTTTCATTAAAAAGGTAAAATTTATGAAACTAATTACTTAAAAATATATGATTTTAAATCTTGAATTTTTGTGTTTATATTTTCAATAAATATTCATATTGTTATTAAAGAAGGGTAATTTTGGTTGAAAAATGGGCAGGAATTTGACAGGACATATGGGGGAGGATGGCAATGCATAGTGGGCACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTCTTTAGGGGCTCTGCTGCCTCAGAACAAGAACAACCTCAGCCAACTCAGTTTTCTGTTATGGACACAGCTCTCAAACCTTGA

mRNA sequence

ATGTTGGAAGGAAAAGCAATCATCGGAGAGACGGATATGTTGCAGGCCATGCAACAGGACGCTCTGGACCTTGCGGCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACTGACATTGCCCGTTTCATTAAAAAGGAATTTGACAGGACATATGGGGGAGGATGGCAATGCATAGTGGGCACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTCTTTAGGGGCTCTGCTGCCTCAGAACAAGAACAACCTCAGCCAACTCAGTTTTCTGTTATGGACACAGCTCTCAAACCTTGA

Coding sequence (CDS)

ATGTTGGAAGGAAAAGCAATCATCGGAGAGACGGATATGTTGCAGGCCATGCAACAGGACGCTCTGGACCTTGCGGCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACTGACATTGCCCGTTTCATTAAAAAGGAATTTGACAGGACATATGGGGGAGGATGGCAATGCATAGTGGGCACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTCTTTAGGGGCTCTGCTGCCTCAGAACAAGAACAACCTCAGCCAACTCAGTTTTCTGTTATGGACACAGCTCTCAAACCTTGA

Protein sequence

MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQPTQFSVMDTALKP

Homology

[Close]

BLAST of HG10014399 vs. NCBI nr
Match: XP_038899068.1 (dynein light chain 2, cytoplasmic [Benincasa hispida])

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-50
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKAIIGETDMLQAMQQDAL+LAAKALDSFDVTEATDIARFIKKEFD+ YGGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLQAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDKIYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQE-QPQPTQFSVMDT 110
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASE+E QPQPTQFSVM+T
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQQPQPTQFSVMET 110

[Close]

BLAST of HG10014399 vs. NCBI nr
Match: XP_004146843.1 (dynein light chain 2, cytoplasmic [Cucumis sativus] >KAE8651306.1 hypothetical protein Csa_000829 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 4.0e-48
Identity = 101/116 (87.07%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKAI+GETDML+AMQQDAL+LAAKALDSFDVTEATDIARFIKKEFDR +GGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQ--PQPT-QFSVMDTALKP 114
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAAS+Q+Q  P+PT  FS+MD  LKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 116

[Close]

BLAST of HG10014399 vs. NCBI nr
Match: XP_008454627.1 (PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo] >KAA0036763.1 dynein light chain LC6, flagellar outer arm [Cucumis melo var. makuwa] >TYJ95832.1 dynein light chain LC6, flagellar outer arm [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 99/117 (84.62%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKAIIGETDML+AMQQDAL+LA+KALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQ----PQPTQFSVMDTALKP 114
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAAS+++Q    P    FS++DT LKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDT-LKP 116

[Close]

BLAST of HG10014399 vs. NCBI nr
Match: XP_022941140.1 (dynein light chain 2, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 192.6 bits (488), Expect = 1.9e-45
Identity = 95/109 (87.16%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKAI+GETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDRT+GGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQPTQFSVMDT 110
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A  Q+ P PT F+  +T
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDA-PQQHPHPTHFAASET 108

[Close]

BLAST of HG10014399 vs. NCBI nr
Match: KAG6607846.1 (hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191.8 bits (486), Expect = 3.2e-45
Identity = 95/109 (87.16%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKAI+GETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDRT+GGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQPTQFSVMDT 110
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A  Q+ P PT F   +T
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDA-PQQHPHPTHFPASET 108

[Close]

BLAST of HG10014399 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.7e-18
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          M E KA+I   DM + MQQDA+D A +AL+ F++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of HG10014399 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.7e-18
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          M + KA+I   DM + MQQDA+D A +AL+ +++ +  DIA FIKKEFD+ Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of HG10014399 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-17
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          M++ KA+I   DM   MQQDA+D A +AL+ +++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of HG10014399 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-17
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          M + KA+I   DM + MQQDA+D A +AL+ +++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of HG10014399 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-17
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          M + KA+I   DM + MQQDA+D A +A++ +++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of HG10014399 vs. ExPASy TrEMBL
Match: A0A5A7T1H5 (Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001190 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.3e-47
Identity = 99/117 (84.62%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKAIIGETDML+AMQQDAL+LA+KALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQ----PQPTQFSVMDTALKP 114
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAAS+++Q    P    FS++DT LKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDT-LKP 116

[Close]

BLAST of HG10014399 vs. ExPASy TrEMBL
Match: A0A1S3BZU7 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103494993 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.3e-47
Identity = 99/117 (84.62%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKAIIGETDML+AMQQDAL+LA+KALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQ----PQPTQFSVMDTALKP 114
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAAS+++Q    P    FS++DT LKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLIDT-LKP 116

[Close]

BLAST of HG10014399 vs. ExPASy TrEMBL
Match: A0A6J1FSQ1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.0e-46
Identity = 95/109 (87.16%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKAI+GETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDRT+GGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQPTQFSVMDT 110
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A  Q+ P PT F+  +T
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDA-PQQHPHPTHFAASET 108

[Close]

BLAST of HG10014399 vs. ExPASy TrEMBL
Match: A0A6J1J2G7 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.5e-45
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKAI+GETDMLQAMQQDALDLAAKALD FDVTEATDIARFIKKEFDRT+GGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQPTQFSVMDT 110
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A  Q+ P PT  +  +T
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDA-PQQHPHPTHLAASET 108

[Close]

BLAST of HG10014399 vs. ExPASy TrEMBL
Match: A0A6J1IHC9 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111476954 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.0e-44
Identity = 92/109 (84.40%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1   MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
           MLEGKA+IGETDMLQAMQQ+ALDLAAKALDSFDVTE TDIARFIKKEFD  YGGGWQCIV
Sbjct: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEQEQPQPTQFSVMDT 110
           GTDFGSFVTHC GCFIYFCVGSLA+LLF+GS+ S  E+P PTQFS+++T
Sbjct: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGS--EKPNPTQFSILET 107

[Close]

BLAST of HG10014399 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-36
Identity = 71/91 (78.02%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          MLEGKA++G+TDM Q M++DAL LA+KALD FDVTE T IARFIKKEFDR+YG GWQCIV
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS 92
          GT FGSFVTHC GCFI+F VGSL ILLF+GS
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGS 91

[Close]

BLAST of HG10014399 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-23
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          MLEGKA + ETDM   MQ  A+ +A+++LD FDV ++  IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS 92
          GT+FG F TH  G FIYF +G+L  L+F+G+
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]

BLAST of HG10014399 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-21
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1  MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60
          MLEGKA++ ++DM   MQ  A+  A++ALD FDV +   IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSA 93
          G++FG F TH  G FIYF + +L  L+F+G++
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAS 92

[Close]

BLAST of HG10014399 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-14
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 5   KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDF 64
           +A+I   DM   MQ++A+++A  A + + V +  DIA  IKKEFD+ +G  W CIVG +F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GSFVTHCFGCFIYFCVGSLAILLFR 90
           GS+VTH    F+YF +   A+LLF+
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFK 121

[Close]

BLAST of HG10014399 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-14
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 12  DMLQAMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIVGTDFGSFVTHC 71
           DM   MQ  A   A   LDS +   +  +A  +KKEFD+ YG  W CIVG+ FGSFVTH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  FGCFIYFCVGSLAILLFR 90
            GCFIYF +  L +LLF+
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

The following BLAST results are available for this feature:

BLAST of HG10014399 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899068.1	2.5e-50	94.55	dynein light chain 2, cytoplasmic [Benincasa hispida]	[more]
XP_004146843.1	4.0e-48	87.07	dynein light chain 2, cytoplasmic [Cucumis sativus] >KAE8651306.1 hypothetical p...	[more]
XP_008454627.1	1.3e-46	84.62	PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo] >KAA003676...	[more]
XP_022941140.1	1.9e-45	87.16	dynein light chain 2, cytoplasmic-like [Cucurbita moschata]	[more]
KAG6607846.1	3.2e-45	87.16	hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10014399 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	7.7e-18	52.81	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
O96860	7.7e-18	52.81	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
Q22799	1.3e-17	51.69	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q24117	1.7e-17	51.69	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
Q3MHR3	3.8e-17	50.56	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]

BLAST of HG10014399 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1H5	6.3e-47	84.62	Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G0...	[more]
A0A1S3BZU7	6.3e-47	84.62	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103494993 PE=3 SV=1	[more]
A0A6J1FSQ1	9.0e-46	87.16	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1	[more]
A0A6J1J2G7	4.5e-45	86.24	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1	[more]
A0A6J1IHC9	1.0e-44	84.40	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111476954 PE=3 SV=1	[more]

BLAST of HG10014399 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27360.1	2.2e-36	78.02	Dynein light chain type 1 family protein	[more]
AT3G16120.1	2.8e-23	56.04	Dynein light chain type 1 family protein	[more]
AT1G52240.2	1.5e-21	52.17	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G15930.1	1.4e-14	44.71	Dynein light chain type 1 family protein	[more]
AT5G20110.1	1.8e-14	50.00	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 1.2E-45 score: 167.6
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 6..89 e-value: 6.1E-33 score: 113.1
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..97
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 1.3E-31 score: 110.5
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..113
None	No IPR available	PANTHER	PTHR11886:SF70	DYNEIN LIGHT CHAIN	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014399.1	HG10014399.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding