HG10014392 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10014392
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr02: 10559062 .. 10559510 (-)
RNA-Seq ExpressionHG10014392
SyntenyHG10014392
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCAGGTACTTATATTTCCAAAAGAGGGTTGGTTCTTAAATCCACAGCAGCAGAAGATCATCTATTAGATTTGTGGTTGTGGTTGTGGTTGCAGCGGTAGTTGTGATTGAGGCTGGAGTTGCAGTTGGGTTTGGAGCTGTGGCTGAGGACGCAGTTGCAGTTGGGGCTGGGGTTGTAGTTGTAGTTGGGGTTGGGGTTGCAGTAGTGGTTGGGGCTGGGGCTCGGGTTGATATTGTGGCTGGACCTGCAGTTGTGGTTGGGGCTGGGGCTCGGGTTGATATTGCGACTGGGCCTGCAGTTGTGGTTGGGGCTGGGACTCAGGTTGTGGTTGGGGCTGGGGCTGGGCTTGCATTTGTGGTTGTGGTTCGGATTGGGGTTGCAGTTGTGGTTGTCCAGCAGACAACCGATTTCTACCCCGGCCTCTTCGAGCACCGGCAATACTAG

mRNA sequence

ATGTTTCCAGCGGTAGTTGTGATTGAGGCTGGAGTTGCAGTTGGGTTTGGAGCTGTGGCTGAGGACGCAGTTGCAGTTGGGGCTGGGGTTGTAGTTGTAGTTGGGGTTGGGGTTGCAGTAGTGGTTGGGGCTGGGGCTCGGGTTGATATTGTGGCTGGACCTGCAGTTGTGGTTGGGGCTGGGGCTCGGGTTGATATTGCGACTGGGCCTGCAGTTGTGGTTGGGGCTGGGACTCAGGTTGTGGTTGGGGCTGGGGCTGGGCTTGCATTTGTGGTTGTGGTTCGGATTGGGGTTGCAGTTGTGGTTGTCCAGCAGACAACCGATTTCTACCCCGGCCTCTTCGAGCACCGGCAATACTAG

Coding sequence (CDS)

ATGTTTCCAGCGGTAGTTGTGATTGAGGCTGGAGTTGCAGTTGGGTTTGGAGCTGTGGCTGAGGACGCAGTTGCAGTTGGGGCTGGGGTTGTAGTTGTAGTTGGGGTTGGGGTTGCAGTAGTGGTTGGGGCTGGGGCTCGGGTTGATATTGTGGCTGGACCTGCAGTTGTGGTTGGGGCTGGGGCTCGGGTTGATATTGCGACTGGGCCTGCAGTTGTGGTTGGGGCTGGGACTCAGGTTGTGGTTGGGGCTGGGGCTGGGCTTGCATTTGTGGTTGTGGTTCGGATTGGGGTTGCAGTTGTGGTTGTCCAGCAGACAACCGATTTCTACCCCGGCCTCTTCGAGCACCGGCAATACTAG

Protein sequence

MFPAVVVIEAGVAVGFGAVAEDAVAVGAGVVVVVGVGVAVVVGAGARVDIVAGPAVVVGAGARVDIATGPAVVVGAGTQVVVGAGAGLAFVVVVRIGVAVVVVQQTTDFYPGLFEHRQY
Homology
[Close]
BLAST of HG10014392 vs. ExPASy TrEMBL
Match: A0A0A0LDL9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851840 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.4e-10
Identity = 67/137 (48.91%), Postives = 75/137 (54.74%), Query Frame = 0 

Query: 2   FPAVVVIEAGVAVGFGAVAEDAVAVGAGV-VVVVGVGVAVVVGAGARVDIVAGPAVVVGA 61
           F  VVV+  GV VG     E  + +G GV  VVV +   V V   A +DI AG AVVV A
Sbjct: 31  FVVVVVVVVGVGVGIEVAEEIGIGIGVGVAAVVVRIEAGVAVEVVAEIDIAAGLAVVVVA 90

Query: 62  GARVDIATGPAVVVGAGTQVVVGA------------------GAGLAFVVVVRIGVAVVV 120
           GA  ++A   A V  AG  V VGA                  GAGLAFVV V I  A+VV
Sbjct: 91  GAGAELAVAVAAVAEAGVVVGVGAGAGVGVGVGPAAAAEVVVGAGLAFVVEVGIAFAIVV 150

[Close]
BLAST of HG10014392 vs. ExPASy TrEMBL
Match: A0A2E5F4Y1 (Uncharacterized protein (Fragment) OS=Chloroflexi bacterium OX=2026724 GN=CL793_01915 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.0e-04
Identity = 48/97 (49.48%), Postives = 56/97 (57.73%), Query Frame = 0 

Query: 6   VVIEAGVAVGFGAVAEDAVAVGAGVVVVVGVGVAVVVGAGARVDIVAGPAVVVGAGARVD 65
           + +  GVAV  GA    A+AVG G  V VGVGVAV VGAG  V I  G  V VG    V 
Sbjct: 1   MAVAVGVAVAVGAGVGVAIAVGVG--VAVGVGVAVAVGAGVGVAIAVGVGVAVGVALGVA 60

Query: 66  IATGPAVVVGAGTQVVVGAGAGLAFVVVVRIGVAVVV 103
           +  G AV VGAG +V V  GAG+   + V +GVAV V
Sbjct: 61  VGVGVAVAVGAGVEVAVAVGAGVGVAIAVGVGVAVAV 95

The following BLAST results are available for this feature:
BLAST of HG10014392 vs.
Match NameE-valueIdentityDescription
BLAST of HG10014392 vs.
Match NameE-valueIdentityDescription
BLAST of HG10014392 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDL98.4e-1048.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851840 PE=4 SV=1[more]
A0A2E5F4Y19.0e-0449.48Uncharacterized protein (Fragment) OS=Chloroflexi bacterium OX=2026724 GN=CL793_... [more]
BLAST of HG10014392 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10014392.1HG10014392.1mRNA