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HG10014386 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCTCAACAATGAGACAGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGCACTATCACAGGTCTCTATCTCACTTTCTTAAATCTTGTTAAACCCTAGATTTACCAACTTTGCGGCTGAGGTTTTTTGAACTTCCAACTTCCATTTCTATTTTCTTCTTTGAAATTCACTGTATTAGAAGTTGTAGAATACTTCAGTATGTCCGCCTAGTGTACAACTCTCACTATTCTTGCTTTCGTCTCACGACCATCTCCCAACGTATGAAAGCTAACTGAAGGGTTCTGGCAAGCGCGCACTTGGGGAACCACTTTCCTACTCTCATTTTTAGATCTAAAATGAAAAAAGTTGTATTATCATCAATGTTAAAAAACAAGGTATTAAACTCATGGGTTGCTTACGGGAAATTAAATTCCTCGTCTTCTGGGCGTTGGGAGGATGAGATGTTTTCTCTGTATAGTTTTTATTTTCATTATTTTTAATTATCAAAACAATTTGAACTATTGACTACTGTCTACTGATGCTGAATATCTATTATGACATATCAGTAGATTTGTTTAGAATGTCCTGTCACATTTATATGGATTGACTCCTACAATTCCTTCTTTCCACTTTGTTTTGTAGGGATTTTTTCTTAAACCAAGTGAATATACTTCAACTTTTAACTTGGAACTGTTTTCATCTGCACTAGAATGATATTATCTTAGTCTGATTAAACATTAACTTCTGCTGAACCTCAGCATTTCTGGATTCTATAACCCATATGCCATTCTTAGATGAATTATAATTTTTTTTTTTTTTAATTTTTTGTTTTGGATTCACTATGCAATAACCAAATGAGAAGCAACTTATAACTTTAACTATGCCCAGTGGTGGAAACATAGTTAACCGAGTGGCTACAAATGACCTTTGTTTGTCATTGGCCTTTATCCTCCTACACTGCCTCTAATAACTTGAACTGTTTTTCACCTGCCCTAGAATGGTATTAACTTAGTCTTGATTAAACAAAAATTCTTCTGGACTCCATTATTTTTGGGTTCTGTAGCCCATATGCCATTCTTTTGTTTGTTTGTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTTTTTTTGTGCGTGTGTGTGTGAGATTATGTTATAAGTGAAGCAAAAAGACTGACCTAGGGTAATCTAGGGGCTGATAGAGAAAACCCTGCCCAATGGAGCTAATAAAAGAAGAGCCTTCCAATAAGAGTTAATCATATTCATAAGAGGACTGTAGTTACAATATAATATCTTGTAATTGAAAAACCATCGTAAAAATGTGTGCAGTATACTATTACAAATAGAATCTAAAATAGATATTTTTTCTCTCAAAATATTCGTAGAAGCACGATTCCAAAAGATCTTATCATTACATTTAAGCCATCAGGCTGTTAGTGCTTCCAAAAATGATCGTCAACCAAGCTAGGCAGGCATAAAGATAAATCAGTTTCGTTGAAAATGTAAGACCACCCCTTTTTTTGGGATTCCTCCATTGGAATAACATAGGAACAAACCAGGGGAGAGAATCCAATTTTGGAACTTTTTTTGAGCTTCTCTTGGGGTGTTGAGGCTTCTATAAGTAAGTGACCACACAAACATCTTAACCTATGTCAAAATTCCAAACTGATTTAACCAAAGGTGTTTTCAGCTTTAGCAAGATCTCAGAGAGTTTAATGGTAACGATTTTAGAGAAGAAACAATTGGAAACTCTTTCTTTAGTGGGTTTTGAGGGCTTGGTTTTTTGTATGCCCTTGTATTCTTTCATTTTTTCTTAATGAAAGCAGTTGTTTCTATAAAAAAAAATAATAATAAATTGAATGAATCAATGGATTCTACCACTATGTCTTGGCCAGCTTCTAATCGAGCCATAATAATCTTTCCTATAAAGGCAATCCAACTACCAATTGCTCTAGGAAAAGAGCCAATAGGCACTCCACAATTATCCCCCAATGTAACCTATGGTTTAGGTTTAGGTTTAGGTTTAGATTTCATCGCCTATGTTTCTGGTTTGACCCCATAGATGCATCACTTTTTATAACTATTTGAGAAGTAGGGCATTATTTCTCTACTTATGGAAAGAGCAAATGGAAGGGAAGTCCAACTCCATTATAATGCGTGCCTCAGGAGTTGGTGAACTACGATTAGATTGTGTTTTTTCGTAGACAACCCCGTATACAGCGTCCACTTAATGTATTTCTCTATGCTGCTGCTGCTACTGAAACTAGTTATTTACTGATGGAGTTTTTTCTTACAAGATGTTTTTACGGAAGAGTTCGGACTCAATTTCATAATTTTAGTTGGTTACCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATTATAAGAAATGTTTGAAAAGGCTAAACGCGGCCTTGAGACTTTTCCTCTGGGAGAGGCGAAGCGTAACCTCAAGTTGCTATAGTCTCAAATTTGATTAAAAACATTTACCAAGTATTGCTAAACAAAACTTAATCATCATGTTAAAGTAAAAAGAGAGAAAAAAAAAAATAGAAAATCTCTCTTGCCAATTGTCACCTAAACAAAAAATCTAAAATGATATCTTTAACCTCACCACTATTATTTAGTTGACTTATCCTAGAAATCTTAGATTGAGACAAACTATTATTCTTCTAACGTTGCACGAAGTGTAGAAACTCTAAGTCTCAGTGTGCTTTATGGTTCAAAGGAGGTGTAGGCCTCACTACCTTTTTGAAAGTGCTAAATCGTCAATTGACCCAAAAACTTAAGTTAATAGGTGAATGCAAATTTAATCTTATATCATCTAACACTCCCCCTCACTTGTGGGCTTGAAATATGAAGAACACCCAACACGTGGAAATGAATATTAATTGGGGAGGAAACAATAATGCAGGGGCCTGAACACAGAACCTCCTTAGACCACCTGCTCTGATATCATATTAATCGTCGATTGACCCAAAAACTTAAGCTAATGGGTGAAGGCAAATTTAATTTTATGTCATCTAACAAAAAGCATTGGCTATGAATGAGTGTCTCATTATATACAATATGCTTGATAACCTACATTGCACTTATGCCTTGGGAAATCTTGTTTTTGACTATGATACGTTGAAGCATGAAGCATCTAAGTTACGTTACATGCTTCATCTGTATTCAATAAAGTATTTTAAAAATATTCTCTAGCGCTACTTAGATGAATATCATTGAGCAACACCACATTATTGCAGCTGTAAGTTTAGATGTAGTAATCTTCAATGATATTACGTTCATTAATTATTTGTTTTAAAAAAATTCAATGTCATTGCATGAACTTAAAGTAGAAGTATGTACTCTTTTTACTTAAACATAAGCATTGGTCGAGGGTAGAAGTCACTGATGGATTGATTTTGAGTGATATTCTTGTATTACTTAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAATATCAGATATTATATTCTACCTGACAGCTTGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGTATGTGTTGTCCTTGCATTCTGGCCTGTACTTTATGGTCATTTTCTGCAAGTCAAATTGTTTATACTGAATCATTCAAATGTGTTGCTTATGCATTTCTACACTCTACTCCAACTACAGGGAGGCCTTTGGGACGTGGACGAGGACGAGGACGCGGCCGTGGTCGTGGGCGTGGACGCTAG ATGAAGCTCAACAATGAGACAGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGCACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAATATCAGATATTATATTCTACCTGACAGCTTGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAGGCCTTTGGGACGTGGACGAGGACGAGGACGCGGCCGTGGTCGTGGGCGTGGACGCTAG ATGAAGCTCAACAATGAGACAGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGCACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAATATCAGATATTATATTCTACCTGACAGCTTGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAGGCCTTTGGGACGTGGACGAGGACGAGGACGCGGCCGTGGTCGTGGGCGTGGACGCTAG MKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR Homology
BLAST of HG10014386 vs. NCBI nr
Match: XP_038896756.1 (small nuclear ribonucleoprotein SmD1b isoform X2 [Benincasa hispida] >XP_038897024.1 small nuclear ribonucleoprotein SmD1b isoform X2 [Benincasa hispida]) HSP 1 Score: 205.7 bits (522), Expect = 2.0e-49 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10014386 vs. NCBI nr
Match: XP_004150106.1 (small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis melo] >XP_022155676.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157762.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157763.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_038896755.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >XP_038897023.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >KGN59890.1 hypothetical protein Csa_002314 [Cucumis sativus]) HSP 1 Score: 205.7 bits (522), Expect = 2.0e-49 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10014386 vs. NCBI nr
Match: XP_022931093.1 (small nuclear ribonucleoprotein SmD1b [Cucurbita moschata] >XP_022995872.1 small nuclear ribonucleoprotein SmD1b [Cucurbita maxima] >XP_023533992.1 small nuclear ribonucleoprotein SmD1b [Cucurbita pepo subsp. pepo] >KAG7036369.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 204.5 bits (519), Expect = 4.5e-49 Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10014386 vs. NCBI nr
Match: XP_022963993.1 (small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita pepo subsp. pepo] >KAG7011241.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 203.8 bits (517), Expect = 7.7e-49 Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10014386 vs. NCBI nr
Match: GFP82007.1 (small nuclear ribonucleoprotein sm d1 [Phtheirospermum japonicum]) HSP 1 Score: 203.4 bits (516), Expect = 1.0e-48 Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of HG10014386 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 1.4e-48 Identity = 99/107 (92.52%), Postives = 105/107 (98.13%), Query Frame = 0
BLAST of HG10014386 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1) HSP 1 Score: 190.7 bits (483), Expect = 8.8e-48 Identity = 96/107 (89.72%), Postives = 104/107 (97.20%), Query Frame = 0
BLAST of HG10014386 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 3.8e-35 Identity = 79/107 (73.83%), Postives = 92/107 (85.98%), Query Frame = 0
BLAST of HG10014386 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 3.8e-35 Identity = 79/107 (73.83%), Postives = 92/107 (85.98%), Query Frame = 0
BLAST of HG10014386 vs. ExPASy Swiss-Prot
Match: Q4R5F6 (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 3.8e-35 Identity = 79/107 (73.83%), Postives = 92/107 (85.98%), Query Frame = 0
BLAST of HG10014386 vs. ExPASy TrEMBL
Match: A0A6J1DVC4 (Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC111024391 PE=3 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 9.8e-50 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10014386 vs. ExPASy TrEMBL
Match: A0A0A0LD16 (Small nuclear ribonucleoprotein Sm D1 OS=Cucumis sativus OX=3659 GN=Csa_3G851900 PE=3 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 9.8e-50 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10014386 vs. ExPASy TrEMBL
Match: A0A1S3C0D0 (Small nuclear ribonucleoprotein Sm D1 OS=Cucumis melo OX=3656 GN=LOC103495011 PE=3 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 9.8e-50 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10014386 vs. ExPASy TrEMBL
Match: A0A6J1K070 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC111491270 PE=3 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 2.2e-49 Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10014386 vs. ExPASy TrEMBL
Match: A0A6J1EXE6 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111437383 PE=3 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 2.2e-49 Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10014386 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 193.4 bits (490), Expect = 9.6e-50 Identity = 99/107 (92.52%), Postives = 105/107 (98.13%), Query Frame = 0
BLAST of HG10014386 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 190.7 bits (483), Expect = 6.3e-49 Identity = 96/107 (89.72%), Postives = 104/107 (97.20%), Query Frame = 0
BLAST of HG10014386 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 190.7 bits (483), Expect = 6.3e-49 Identity = 96/107 (89.72%), Postives = 104/107 (97.20%), Query Frame = 0
BLAST of HG10014386 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 185.3 bits (469), Expect = 2.6e-47 Identity = 99/117 (84.62%), Postives = 105/117 (89.74%), Query Frame = 0
BLAST of HG10014386 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 48.1 bits (113), Expect = 5.0e-06 Identity = 32/102 (31.37%), Postives = 56/102 (54.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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