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HG10014348 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGATCCATTACTGACACTCCTCTTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCTCCAGTTGTCCACTACACCGTAACCCTAGACCTCCGAACCTCCATAATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGCAGCGGAGGAGGCGCTGGAGACATGGAGGCGGGAATGGCGGAGGAGCGGCGGTTGAGGCGGCCGGAGAAGCTGCCACCGACGGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGCGAGGAGGAATGTGCGATATGTTTGGAGGAGTTTTTGGCCGGAGAAAATTGCCAGGCGTTGCCGGAATGTAACCATTTTTTTCATTCGGATTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCTATCTGTCGTAATTGTGTTGCAGCTTAG ATGGCGGATCCATTACTGACACTCCTCTTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCTCCAGTTGTCCACTACACCGTAACCCTAGACCTCCGAACCTCCATAATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGCAGCGGAGGAGGCGCTGGAGACATGGAGGCGGGAATGGCGGAGGAGCGGCGGTTGAGGCGGCCGGAGAAGCTGCCACCGACGGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGCGAGGAGGAATGTGCGATATGTTTGGAGGAGTTTTTGGCCGGAGAAAATTGCCAGGCGTTGCCGGAATGTAACCATTTTTTTCATTCGGATTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCTATCTGTCGTAATTGTGTTGCAGCTTAG ATGGCGGATCCATTACTGACACTCCTCTTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCTCCAGTTGTCCACTACACCGTAACCCTAGACCTCCGAACCTCCATAATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGCAGCGGAGGAGGCGCTGGAGACATGGAGGCGGGAATGGCGGAGGAGCGGCGGTTGAGGCGGCCGGAGAAGCTGCCACCGACGGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGCGAGGAGGAATGTGCGATATGTTTGGAGGAGTTTTTGGCCGGAGAAAATTGCCAGGCGTTGCCGGAATGTAACCATTTTTTTCATTCGGATTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCTATCTGTCGTAATTGTGTTGCAGCTTAG MADPLLTLLFPMETMVPESPSPPVVHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRSGGGAGDMEAGMAEERRLRRPEKLPPTVRFGSEKMVRRRSEEECAICLEEFLAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA Homology
BLAST of HG10014348 vs. NCBI nr
Match: XP_031740449.1 (RING-H2 finger protein ATL39-like [Cucumis sativus]) HSP 1 Score: 293.5 bits (750), Expect = 1.1e-75 Identity = 145/159 (91.19%), Postives = 151/159 (94.97%), Query Frame = 0
BLAST of HG10014348 vs. NCBI nr
Match: KAA0064334.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]) HSP 1 Score: 288.1 bits (736), Expect = 4.5e-74 Identity = 143/159 (89.94%), Postives = 151/159 (94.97%), Query Frame = 0
BLAST of HG10014348 vs. NCBI nr
Match: XP_008453063.1 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYK20253.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]) HSP 1 Score: 288.1 bits (736), Expect = 4.5e-74 Identity = 143/159 (89.94%), Postives = 151/159 (94.97%), Query Frame = 0
BLAST of HG10014348 vs. NCBI nr
Match: XP_022976597.1 (RING-H2 finger protein ATL39-like [Cucurbita maxima]) HSP 1 Score: 265.8 bits (678), Expect = 2.4e-67 Identity = 134/158 (84.81%), Postives = 143/158 (90.51%), Query Frame = 0
BLAST of HG10014348 vs. NCBI nr
Match: XP_022936829.1 (RING-H2 finger protein ATL39-like [Cucurbita moschata]) HSP 1 Score: 264.6 bits (675), Expect = 5.4e-67 Identity = 133/158 (84.18%), Postives = 143/158 (90.51%), Query Frame = 0
BLAST of HG10014348 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 3.9e-12 Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0
BLAST of HG10014348 vs. ExPASy Swiss-Prot
Match: P0C035 (RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 5.1e-12 Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of HG10014348 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 6.7e-12 Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0
BLAST of HG10014348 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 6.7e-12 Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0
BLAST of HG10014348 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 2.5e-11 Identity = 37/95 (38.95%), Postives = 46/95 (48.42%), Query Frame = 0
BLAST of HG10014348 vs. ExPASy TrEMBL
Match: A0A0A0L062 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 PE=4 SV=1) HSP 1 Score: 293.5 bits (750), Expect = 5.2e-76 Identity = 145/159 (91.19%), Postives = 151/159 (94.97%), Query Frame = 0
BLAST of HG10014348 vs. ExPASy TrEMBL
Match: A0A5A7VAT0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00330 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74 Identity = 143/159 (89.94%), Postives = 151/159 (94.97%), Query Frame = 0
BLAST of HG10014348 vs. ExPASy TrEMBL
Match: A0A5D3D9M0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003920 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74 Identity = 143/159 (89.94%), Postives = 151/159 (94.97%), Query Frame = 0
BLAST of HG10014348 vs. ExPASy TrEMBL
Match: A0A1S3BVC7 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103493886 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74 Identity = 143/159 (89.94%), Postives = 151/159 (94.97%), Query Frame = 0
BLAST of HG10014348 vs. ExPASy TrEMBL
Match: A0A6J1IG67 (RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE=4 SV=1) HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67 Identity = 134/158 (84.81%), Postives = 143/158 (90.51%), Query Frame = 0
BLAST of HG10014348 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein ) HSP 1 Score: 72.8 bits (177), Expect = 2.8e-13 Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0
BLAST of HG10014348 vs. TAIR 10
Match: AT1G53820.1 (RING/U-box superfamily protein ) HSP 1 Score: 72.4 bits (176), Expect = 3.6e-13 Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of HG10014348 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein ) HSP 1 Score: 72.0 bits (175), Expect = 4.8e-13 Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0
BLAST of HG10014348 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein ) HSP 1 Score: 72.0 bits (175), Expect = 4.8e-13 Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0
BLAST of HG10014348 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein ) HSP 1 Score: 69.3 bits (168), Expect = 3.1e-12 Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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