HG10014346 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014346
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	translation initiation factor IF-1, chloroplastic-like
Location	Chr02: 9767859 .. 9768293 (+)
RNA-Seq Expression	HG10014346
Synteny	HG10014346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAACACCACTTCCGGCCACCGTCCGCTCTCCTTTTTCCTGCCGTCAAATCCCATCTCTCCGTCGTCTCAATCACTTTTCCCAGCTCCCAGTTCCTCCATAACCCTTCCCATGCTCCGGGACCGGCAGGGTTCGCTCTCATGGCAAAGTCTCCAAAAAACGATACCTCCGAGCAGAAATGGAGCCATGAAGGCTCGGTCGTTGAGTCTCTTCCTAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTCTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTGCGTATTTTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTACGATTCTACCAAAGGCCGTATTGTTTATAGACTTCGAAGTACTAAAGATTCATCTTCATGA

mRNA sequence

ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAACACCACTTCCGGCCACCGTCCGCTCTCCTTTTTCCTGCCGTCAAATCCCATCTCTCCGTCGTCTCAATCACTTTTCCCAGCTCCCAGTTCCTCCATAACCCTTCCCATGCTCCGGGACCGGCAGGGTTCGCTCTCATGGCAAAGTCTCCAAAAAACGATACCTCCGAGCAGAAATGGAGCCATGAAGGCTCGGTCGTTGAGTCTCTTCCTAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTCTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTGCGTATTTTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTACGATTCTACCAAAGGCCGTATTGTTTATAGACTTCGAAGTACTAAAGATTCATCTTCATGA

Coding sequence (CDS)

ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAACACCACTTCCGGCCACCGTCCGCTCTCCTTTTTCCTGCCGTCAAATCCCATCTCTCCGTCGTCTCAATCACTTTTCCCAGCTCCCAGTTCCTCCATAACCCTTCCCATGCTCCGGGACCGGCAGGGTTCGCTCTCATGGCAAAGTCTCCAAAAAACGATACCTCCGAGCAGAAATGGAGCCATGAAGGCTCGGTCGTTGAGTCTCTTCCTAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTCTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTGCGTATTTTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTACGATTCTACCAAAGGCCGTATTGTTTATAGACTTCGAAGTACTAAAGATTCATCTTCATGA

Protein sequence

MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDSSS

Homology

[Close]

BLAST of HG10014346 vs. NCBI nr
Match: XP_038899010.1 (translation initiation factor IF-1, chloroplastic [Benincasa hispida])

HSP 1 Score: 257.3 bits (656), Expect = 7.9e-65
Identity = 134/145 (92.41%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMA 60
           MSST LLQFPLLQ HFRPPS L FPAVKSHLSVVSITFP++QFLHNPSHA   AGF LMA
Sbjct: 1   MSSTILLQFPLLQSHFRPPSTLFFPAVKSHLSVVSITFPTTQFLHNPSHA--SAGFVLMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLR-STKDSSS 145
           EVSRYDSTKGRIVYRLR STKDSSS
Sbjct: 121 EVSRYDSTKGRIVYRLRSSTKDSSS 143

[Close]

BLAST of HG10014346 vs. NCBI nr
Match: KAA0064332.1 (translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 translation initiation factor IF-1 [Cucumis melo var. makuwa])

HSP 1 Score: 253.8 bits (647), Expect = 8.7e-64
Identity = 133/145 (91.72%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMA 60
           MSSTNLLQFPLLQ HFRPPS LLFP VKSHLSVVSI+FP+SQFLH PSHA  P GFALMA
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHA--PPGFALMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPKNDTSEQK SHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRST-KDSSS 145
           EVSRYDSTKGRIVYRLRS+ KDSSS
Sbjct: 121 EVSRYDSTKGRIVYRLRSSGKDSSS 143

[Close]

BLAST of HG10014346 vs. NCBI nr
Match: XP_011654076.1 (uncharacterized protein LOC101206284 [Cucumis sativus] >KGN55131.1 hypothetical protein Csa_012104 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 5.6e-63
Identity = 130/144 (90.28%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMA 60
           MSSTNLLQFPLLQ HFRPPS LLFPAVKSHLS+ SI+FP+SQFLH PSHA  PA F LMA
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHA-SPA-FVLMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPKNDTSEQK SHEGSVVESLPNGMFRVRLDN+DLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSTKDSSS 145
           EVSRYDSTKGRIVYR+RSTKDSSS
Sbjct: 121 EVSRYDSTKGRIVYRMRSTKDSSS 142

[Close]

BLAST of HG10014346 vs. NCBI nr
Match: XP_022940969.1 (translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata] >XP_023525132.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7037405.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 239.6 bits (610), Expect = 1.7e-59
Identity = 122/144 (84.72%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMA 60
           MSSTNLLQFPLLQ   RPPS  LFPA+KSH+SVVSI FPSSQFLHNPSH  GP  F  MA
Sbjct: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSH--GPVSFVPMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPK+++SEQK+SHEGSV+ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSTKDSSS 145
           EVSRYDSTKGRIVYR RSTKD SS
Sbjct: 121 EVSRYDSTKGRIVYRHRSTKDPSS 142

[Close]

BLAST of HG10014346 vs. NCBI nr
Match: KAG6607876.1 (Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239.2 bits (609), Expect = 2.2e-59
Identity = 123/144 (85.42%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMA 60
           MSSTNLLQFPLLQ   RPPS  LFPA+KSHLSVVSI FPSSQFLHNPSH  G A F  MA
Sbjct: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHLSVVSIPFPSSQFLHNPSH--GSASFVPMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPK+++SEQK+SHEGSV+ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSTKDSSS 145
           EVSRYDSTKGRIVYR RSTKD SS
Sbjct: 121 EVSRYDSTKGRIVYRHRSTKDPSS 142

[Close]

BLAST of HG10014346 vs. ExPASy Swiss-Prot
Match: Q94KR7 (Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-31
Identity = 67/100 (67.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 43  FLHNPSHAPGPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYIS 102
           FL  P   P     +  + +  + + EQKW HEG ++ESLPNGMFRVRLDNEDLILGYIS
Sbjct: 39  FLAPPPLLPAAPALSAASAAKPDKSGEQKWVHEGLIMESLPNGMFRVRLDNEDLILGYIS 98

Query: 103 GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSTKDS 143
           GKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYRLRS+  S
Sbjct: 99  GKIRKNYVRILPGDRVKVEVTRYDSSKGRIVYRLRSSTPS 138

[Close]

BLAST of HG10014346 vs. ExPASy Swiss-Prot
Match: A0A370 (Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=infA PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-29
Identity = 60/74 (81.08%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 69  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 128
           EQKW+HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKWTHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 129 KGRIVYRLRSTKDS 143
           +GRI+YRLR+ KDS
Sbjct: 63  RGRIIYRLRN-KDS 75

[Close]

BLAST of HG10014346 vs. ExPASy Swiss-Prot
Match: Q09G11 (Translation initiation factor IF-1, chloroplastic OS=Platanus occidentalis OX=4403 GN=infA PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-29
Identity = 61/75 (81.33%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 69  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 128
           EQKW HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 129 KGRIVYRLRSTKDSS 144
           +GRI+YRLRS KDS+
Sbjct: 63  RGRIIYRLRS-KDSN 76

[Close]

BLAST of HG10014346 vs. ExPASy Swiss-Prot
Match: Q94KR9 (Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=infA PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-29
Identity = 56/75 (74.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 67  TSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYD 126
           + EQKW+HEGS+ ESLPNGMFRV+LDN D++LGYISGKIRKNF+R+LPGDRV++EVSRYD
Sbjct: 81  SQEQKWTHEGSITESLPNGMFRVKLDNADVVLGYISGKIRKNFIRLLPGDRVKIEVSRYD 140

Query: 127 STKGRIVYRLRSTKD 142
           S+KGRI+YRLR  ++
Sbjct: 141 SSKGRIIYRLRGGRE 155

[Close]

BLAST of HG10014346 vs. ExPASy Swiss-Prot
Match: Q7ICQ5 (Translation initiation factor IF-1, chloroplastic OS=Fouquieria splendens OX=13533 GN=infA PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-29
Identity = 60/74 (81.08%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 69  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 128
           EQKW HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 129 KGRIVYRLRSTKDS 143
           +GRI+YRLR+ KDS
Sbjct: 63  RGRIIYRLRN-KDS 75

[Close]

BLAST of HG10014346 vs. ExPASy TrEMBL
Match: A0A5A7V7J3 (Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003940 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.2e-64
Identity = 133/145 (91.72%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMA 60
           MSSTNLLQFPLLQ HFRPPS LLFP VKSHLSVVSI+FP+SQFLH PSHA  P GFALMA
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHA--PPGFALMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPKNDTSEQK SHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRST-KDSSS 145
           EVSRYDSTKGRIVYRLRS+ KDSSS
Sbjct: 121 EVSRYDSTKGRIVYRLRSSGKDSSS 143

[Close]

BLAST of HG10014346 vs. ExPASy TrEMBL
Match: A0A0A0L4Q7 (S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637710 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.7e-63
Identity = 130/144 (90.28%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMA 60
           MSSTNLLQFPLLQ HFRPPS LLFPAVKSHLS+ SI+FP+SQFLH PSHA  PA F LMA
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHA-SPA-FVLMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPKNDTSEQK SHEGSVVESLPNGMFRVRLDN+DLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSTKDSSS 145
           EVSRYDSTKGRIVYR+RSTKDSSS
Sbjct: 121 EVSRYDSTKGRIVYRMRSTKDSSS 142

[Close]

BLAST of HG10014346 vs. ExPASy TrEMBL
Match: A0A6J1FLU6 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446393 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 8.2e-60
Identity = 122/144 (84.72%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMA 60
           MSSTNLLQFPLLQ   RPPS  LFPA+KSH+SVVSI FPSSQFLHNPSH  GP  F  MA
Sbjct: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSH--GPVSFVPMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPK+++SEQK+SHEGSV+ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSTKDSSS 145
           EVSRYDSTKGRIVYR RSTKD SS
Sbjct: 121 EVSRYDSTKGRIVYRHRSTKDPSS 142

[Close]

BLAST of HG10014346 vs. ExPASy TrEMBL
Match: A0A6J1IW62 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480474 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.4e-59
Identity = 123/144 (85.42%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMA 60
           MSSTNLLQFPLLQ   RPP   LFP  KSHLSVVSI FPSSQFLHNPSH  GPA FA MA
Sbjct: 1   MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSH--GPASFAPMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPK+++SEQK+SHEGSV+ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSTKDSSS 145
           EVSRYDSTKGRIVYR RSTKD SS
Sbjct: 121 EVSRYDSTKGRIVYRHRSTKDPSS 142

[Close]

BLAST of HG10014346 vs. ExPASy TrEMBL
Match: A0A6J1IP00 (uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.0e-57
Identity = 117/139 (84.17%), Postives = 126/139 (90.65%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMA 60
           MSSTNLL+FPLL  H RPPS L FPA+KSHLSVVSI FP+SQFL NPSH  GPA FALMA
Sbjct: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSH--GPARFALMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           K PK+D++EQKWS+EGS+VESLPNGMFRVRLDNEDLILGYI GKIRKNFVRILPGDRVRV
Sbjct: 61  KPPKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRST 140
           EVSRYDSTKGRIVYR RS+
Sbjct: 121 EVSRYDSTKGRIVYRNRSS 137

[Close]

BLAST of HG10014346 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-22
Identity = 64/130 (49.23%), Postives = 80/130 (61.54%), Query Frame = 0


Query: 11  LLQHHFRPPSALLFPAVKSHLSVVSITFPSSQFLHNPSHAPGPAGFALMAKSPKNDTSE- 70
           LL   FR  + +L P +     V S +  + + +     A G  G A  +K  K    E 
Sbjct: 13  LLPCQFRFTNGVLIPQIN---YVASNSVVNIRPMIRCQRASGGRGGANRSKPAKPQVKEG 72

Query: 71  -QKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 130
             K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V+VE+S YDST
Sbjct: 73  SNKTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEMSVYDST 132

Query: 131 KGRIVYRLRS 139
           KGRI++R+ S
Sbjct: 133 KGRIIFRMSS 139

The following BLAST results are available for this feature:

BLAST of HG10014346 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899010.1	7.9e-65	92.41	translation initiation factor IF-1, chloroplastic [Benincasa hispida]	[more]
KAA0064332.1	8.7e-64	91.72	translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 transl...	[more]
XP_011654076.1	5.6e-63	90.28	uncharacterized protein LOC101206284 [Cucumis sativus] >KGN55131.1 hypothetical ...	[more]
XP_022940969.1	1.7e-59	84.72	translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata] >XP_...	[more]
KAG6607876.1	2.2e-59	85.42	Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosper...	[more]

BLAST of HG10014346 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94KR7	1.6e-31	67.00	Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA...	[more]
A0A370	1.1e-29	81.08	Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=...	[more]
Q09G11	1.1e-29	81.33	Translation initiation factor IF-1, chloroplastic OS=Platanus occidentalis OX=44...	[more]
Q94KR9	1.9e-29	74.67	Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
Q7ICQ5	2.5e-29	81.08	Translation initiation factor IF-1, chloroplastic OS=Fouquieria splendens OX=135...	[more]

BLAST of HG10014346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7J3	4.2e-64	91.72	Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0L4Q7	2.7e-63	90.28	S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637710 PE=...	[more]
A0A6J1FLU6	8.2e-60	84.72	translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=...	[more]
A0A6J1IW62	2.4e-59	85.42	translation initiation factor IF-1, chloroplastic-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1IP00	1.0e-57	84.17	uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947...	[more]

BLAST of HG10014346 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11175.1	1.0e-22	49.23	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 69..137 e-value: 0.005 score: 26.1
None	No IPR available	GENE3D	2.40.50.140		coord: 63..144 e-value: 5.2E-33 score: 114.5
None	No IPR available	PANTHER	PTHR33370:SF1	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 52..141
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 75..135 e-value: 6.7E-22 score: 77.1
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 63..137 score: 20.037275
IPR004368	Translation initiation factor IF-1	TIGRFAM	TIGR00008	TIGR00008	coord: 69..136 e-value: 7.1E-35 score: 116.8
IPR004368	Translation initiation factor IF-1	PANTHER	PTHR33370	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 52..141
IPR004368	Translation initiation factor IF-1	HAMAP	MF_00075	IF_1	coord: 59..137 score: 22.967432
IPR004368	Translation initiation factor IF-1	CDD	cd04451	S1_IF1	coord: 75..135 e-value: 8.66485E-34 score: 111.073
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 69..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014346.1	HG10014346.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding