HG10014333 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014333
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Nuclear nucleic acid-binding protein C1D
Location	Chr02: 9671575 .. 9672615 (+)
RNA-Seq Expression	HG10014333
Synteny	HG10014333

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAGGTGTTCGAGATTTCGCTGTGGTGCCCGAGAAACTTATGGATTCAGTGAAGACGACATTGGACAATGTAGAGCAAGTACAAACTCACCTTATTTCCTTCCTGTCTATCGCCGAGCCTGAAGTTCTTGCCCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATGTAAAATTTCGTTGATTACGAATAGTACTTGATTCTTTTTCTTGTTTATTTTGTATTATGGAGGCGAAATTTTTGTTTGTTTTGGTATTTTGCAGTGAAGTTGAGGTGTACCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGTAATTATTCTCATACCTTGTGTCTGGTGATTAAAGCTGCAATTTGCTCACATGGGTAGTCATGTTATTCTTCCATTGTTTCTCAAATTATCATTCTTATGTTTTGTTATGCATGTAGGAGAGATTAAGCTTGTACCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGGTATGTTTGAGTTCTGCTTTTTTGAGTTTATTTCAGCAATTTTTTTTTCTTTGTTGTTATTACTTCCTTCCATGGTAGATTGATAATTTTGCATTTAAATTTGTTCATGAAGCACCATTGAAGCGTTCTACTACCTTGAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACCCAAGGTTGGTTGAATTTTTTTGGGGGAGGAGGGGGCCTTTGTGTGCTTGATTCCCTTTGATCAAGGAAATATTTCAATATTTTTCAGAGCAAAAGCTGAGTATGAGGGATATTAGTAGGGGAAAGGGTCCAAAAATGAAGCAATTAGAAAGGAATGTACAAAAGAAGAGGAAGTATCAGTCTTCTGATAAACAATCTGTTCAAACTGCTGCTAAGGATTTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGATAGTAATGGACGTTTGCAGGGTCCACTGTGCGGGGATGCTTCAGATGATGACCTACAGGAGGACTAA

mRNA sequence

ATGGAGGGAGGTGTTCGAGATTTCGCTGTGGTGCCCGAGAAACTTATGGATTCAGTGAAGACGACATTGGACAATGTAGAGCAAGTACAAACTCACCTTATTTCCTTCCTGTCTATCGCCGAGCCTGAAGTTCTTGCCCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATTGAAGTTGAGGTGTACCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTATTGATAATTTTGCATTTAAATTTGTTCATGAAGCACCATTGAAGCGTTCTACTACCTTGAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACCCAAGAGCAAAAGCTGAGTATGAGGGATATTAGTAGGGGAAAGGGTCCAAAAATGAAGCAATTAGAAAGGAATGTACAAAAGAAGAGGAAGTATCAGTCTTCTGATAAACAATCTGTTCAAACTGCTGCTAAGGATTTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGATAGTAATGGACGTTTGCAGGGTCCACTGTGCGGGGATGCTTCAGATGATGACCTACAGGAGGACTAA

Coding sequence (CDS)

ATGGAGGGAGGTGTTCGAGATTTCGCTGTGGTGCCCGAGAAACTTATGGATTCAGTGAAGACGACATTGGACAATGTAGAGCAAGTACAAACTCACCTTATTTCCTTCCTGTCTATCGCCGAGCCTGAAGTTCTTGCCCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATTGAAGTTGAGGTGTACCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTATTGATAATTTTGCATTTAAATTTGTTCATGAAGCACCATTGAAGCGTTCTACTACCTTGAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACCCAAGAGCAAAAGCTGAGTATGAGGGATATTAGTAGGGGAAAGGGTCCAAAAATGAAGCAATTAGAAAGGAATGTACAAAAGAAGAGGAAGTATCAGTCTTCTGATAAACAATCTGTTCAAACTGCTGCTAAGGATTTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGATAGTAATGGACGTTTGCAGGGTCCACTGTGCGGGGATGCTTCAGATGATGACCTACAGGAGGACTAA

Protein sequence

MEGGVRDFAVVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALKLRCTGVHLDDHPIKSELIDNFAFKFVHEAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSSDKQSVQTAAKDFLEKAARELLGDSNGRLQGPLCGDASDDDLQED

Homology

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BLAST of HG10014333 vs. NCBI nr
Match: KAG6608310.1 (Nuclear nucleic acid-binding protein C1D, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340.5 bits (872), Expect = 9.9e-90
Identity = 179/203 (88.18%), Postives = 191/203 (94.09%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPEK+MDSVK TLDNVEQVQTHLISFLSIA P+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAGPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCTGVHLDDHPIKSELIDNFAFKFVHEAPLKRSTTLNYQAATRFIEHS 120
           +R TTTLFALKLRC+GVH DDHPIKSELID+ A KFVHEAPLKRSTTLNYQAATRFIEHS
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELIDHCASKFVHEAPLKRSTTLNYQAATRFIEHS 120

Query: 121 LPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSSDKQSVQTAAKDFLEKAARELL 180
           LPDLTQEQK  MRDISRGKGPKMKQ+ER VQKKRKYQSS+KQSVQ AAK+FLEKAARELL
Sbjct: 121 LPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLEKAARELL 180

Query: 181 GDSNGRLQGPLCGDASDDDLQED 204
           GD+NG LQGPLCGDAS+DDLQED
Sbjct: 181 GDNNGGLQGPLCGDASNDDLQED 203

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BLAST of HG10014333 vs. NCBI nr
Match: XP_008452844.1 (PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo] >KAA0064576.1 nuclear nucleic acid-binding protein C1D [Cucumis melo var. makuwa] >TYK20014.1 nuclear nucleic acid-binding protein C1D [Cucumis melo var. makuwa])

HSP 1 Score: 335.5 bits (859), Expect = 3.2e-88
Identity = 185/211 (87.68%), Postives = 193/211 (91.47%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEK+MDSVKTTLDNVE VQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCTGVHLDDHPIKSE-----LIDNFAFKFV--HEAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRC GVHLDDHPIKSE     L ++   +F+   + PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSSDKQSVQTAAKDFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRKYQSS+KQSVQTAAK+FLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGRLQGPLCGDASDDD-LQED 204
           KAARELLGDSNG LQGPLCGDASDDD LQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of HG10014333 vs. NCBI nr
Match: XP_038897508.1 (nuclear nucleic acid-binding protein C1D [Benincasa hispida])

HSP 1 Score: 334.7 bits (857), Expect = 5.5e-88
Identity = 183/210 (87.14%), Postives = 193/210 (91.90%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEK+MDSVK TLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCTGVHLDDHPIKSEL--IDNFAFKF-----VHEAPLKRSTTLNYQAA 120
           A+VTTTLFALKLRC+GV LDDHPIKSEL  +  +  K      + +APLKRSTTLNYQAA
Sbjct: 61  AKVTTTLFALKLRCSGVLLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSSDKQSVQTAAKDFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQS++KQSVQTAAK+FLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSNEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGRLQGPLCGDASDDDLQED 204
           KAARELLGDSNG LQGPLCGDASDD LQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDGLQED 210

[Close]

BLAST of HG10014333 vs. NCBI nr
Match: XP_004145496.1 (nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypothetical protein Csa_012234 [Cucumis sativus])

HSP 1 Score: 333.2 bits (853), Expect = 1.6e-87
Identity = 184/211 (87.20%), Postives = 193/211 (91.47%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEK+MDSVKTTLDNVEQVQTHLISFLSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCTGVHLDDHPIKSEL--IDNFAFKF-----VHEAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRC+GVHLDDHPIKSEL  +  +  K      + +APLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSSDKQSVQTAAKDFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRKYQSS+KQSVQTAAK+FLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGRLQGPLCGDASDDD-LQED 204
           KAARELLGD NG LQGPLCGDA DDD LQED
Sbjct: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211

[Close]

BLAST of HG10014333 vs. NCBI nr
Match: XP_022939979.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata] >XP_022939980.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata])

HSP 1 Score: 318.5 bits (815), Expect = 4.0e-83
Identity = 173/210 (82.38%), Postives = 188/210 (89.52%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPEK+MDSVK TLDNVEQVQTHLISFLSIAEP+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCTGVHLDDHPIKSEL--IDNFAFKF-----VHEAPLKRSTTLNYQAA 120
           +R TTTLFALKLRC+GVH DDHPIKSEL  +  +  K      + +APLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSSDKQSVQTAAKDFLE 180
           TRFIEHSLPDLTQEQK  MRDISRGKGPKMKQ+ER VQKKRKYQSS+KQSVQ AAK+FLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGRLQGPLCGDASDDDLQED 204
           KAARELLGD+NG LQGPLCGDAS+DDLQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDDLQED 210

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BLAST of HG10014333 vs. ExPASy Swiss-Prot
Match: Q3KPR1 (Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-06
Identity = 34/119 (28.57%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 12  PEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ + +    ++V  V   L   +S++  E+L +++PL++A+  L+ A    +LF + 
Sbjct: 12  PTEIHEYLMAFENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIY 71

Query: 72  LRCTGVHLDDHPIKSEL--IDNFAFKFVHEAPLKRSTTLNYQAATRFIEHSLPDLTQEQ 129
           L   G++  +HP+K EL  I  +  +       K++  L+  AA RFI+H+L D T E+
Sbjct: 72  LTTQGINPKEHPVKEELERIRGYMNRVKEITDRKKAARLDKGAARRFIKHALCDPTSEE 130

[Close]

BLAST of HG10014333 vs. ExPASy Swiss-Prot
Match: Q5ZHS3 (Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05
Identity = 31/112 (27.68%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 12  PEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ D + T   ++  V   L + +S++  E+L +++PL++A+  L+ A    ++F + 
Sbjct: 11  PTEIHDYLTTFEKSLTSVDEMLKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMFWVY 70

Query: 72  LRCTGVHLDDHPIKSEL--IDNFAFKFVHEAPLKRSTTLNYQAATRFIEHSL 122
           L   G++  +HP+K EL  I  +  K    A  K+++ L+  AA+RF+ ++L
Sbjct: 71  LATQGINPKEHPVKQELERIRTYMNKVKEIADKKKASKLDKGAASRFVRNAL 122

[Close]

BLAST of HG10014333 vs. ExPASy Swiss-Prot
Match: Q5XJ97 (Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.8e-05
Identity = 32/130 (24.62%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 2   EGGVRDFAVVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLA 61
           +  V D+   P ++ D++     ++  VQ  + + +S++  + L ++ PL++A+  L+ A
Sbjct: 4   DAAVEDY---PTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSA 63

Query: 62  RVTTTLFALKLRCTGVHLDDHPIKSEL--IDNFAFKFVHEAPLKRSTTLNYQAATRFIEH 121
               ++F + L   GV+  DHPIK EL  I  +  K       +++  ++ +AA+RF+ +
Sbjct: 64  YALNSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKAAHIDKEAASRFVRN 123

Query: 122 SLPDLTQEQK 130
           +L D   +++
Sbjct: 124 ALWDADDKKR 130

[Close]

BLAST of HG10014333 vs. ExPASy TrEMBL
Match: A0A5D3D8Y3 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001320 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.5e-88
Identity = 185/211 (87.68%), Postives = 193/211 (91.47%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEK+MDSVKTTLDNVE VQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCTGVHLDDHPIKSE-----LIDNFAFKFV--HEAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRC GVHLDDHPIKSE     L ++   +F+   + PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSSDKQSVQTAAKDFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRKYQSS+KQSVQTAAK+FLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGRLQGPLCGDASDDD-LQED 204
           KAARELLGDSNG LQGPLCGDASDDD LQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of HG10014333 vs. ExPASy TrEMBL
Match: A0A1S3BUS6 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.5e-88
Identity = 185/211 (87.68%), Postives = 193/211 (91.47%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEK+MDSVKTTLDNVE VQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCTGVHLDDHPIKSE-----LIDNFAFKFV--HEAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRC GVHLDDHPIKSE     L ++   +F+   + PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSSDKQSVQTAAKDFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRKYQSS+KQSVQTAAK+FLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGRLQGPLCGDASDDD-LQED 204
           KAARELLGDSNG LQGPLCGDASDDD LQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of HG10014333 vs. ExPASy TrEMBL
Match: A0A0A0L118 (Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651890 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 7.7e-88
Identity = 184/211 (87.20%), Postives = 193/211 (91.47%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEK+MDSVKTTLDNVEQVQTHLISFLSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCTGVHLDDHPIKSEL--IDNFAFKF-----VHEAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRC+GVHLDDHPIKSEL  +  +  K      + +APLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSSDKQSVQTAAKDFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRKYQSS+KQSVQTAAK+FLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGRLQGPLCGDASDDD-LQED 204
           KAARELLGD NG LQGPLCGDA DDD LQED
Sbjct: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211

[Close]

BLAST of HG10014333 vs. ExPASy TrEMBL
Match: A0A6J1FIR0 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111445751 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.0e-83
Identity = 173/210 (82.38%), Postives = 188/210 (89.52%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPEK+MDSVK TLDNVEQVQTHLISFLSIAEP+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCTGVHLDDHPIKSEL--IDNFAFKF-----VHEAPLKRSTTLNYQAA 120
           +R TTTLFALKLRC+GVH DDHPIKSEL  +  +  K      + +APLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSSDKQSVQTAAKDFLE 180
           TRFIEHSLPDLTQEQK  MRDISRGKGPKMKQ+ER VQKKRKYQSS+KQSVQ AAK+FLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGRLQGPLCGDASDDDLQED 204
           KAARELLGD+NG LQGPLCGDAS+DDLQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDDLQED 210

[Close]

BLAST of HG10014333 vs. ExPASy TrEMBL
Match: A0A6J1F700 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111442695 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 9.7e-83
Identity = 172/209 (82.30%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRD AVVPEK+MDSVKTTL+NVEQVQTHLIS LSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCTGVHLDDHPIKSE-----LIDNFAFKFV--HEAPLKRSTTLNYQAA 120
           ARVTTTLFALK+RC+GVH DDHPI +E     L ++   +F+   + PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYEDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSSDKQSVQTAAKDFLE 180
           TRFIEHSLPDLTQ+QK SMRDISRGKGPKM+QLERN+QKKRKYQSS+KQSVQ AAK+FLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGRLQGPLCGDASDDDLQE 203
           KAARELLGDSNG LQGPLCG ASDD+LQE
Sbjct: 181 KAARELLGDSNGGLQGPLCGVASDDELQE 209

[Close]

BLAST of HG10014333 vs. TAIR 10
Match: AT5G25080.1 (Sas10/Utp3/C1D family )

HSP 1 Score: 181.8 bits (460), Expect = 5.5e-46
Identity = 107/198 (54.04%), Postives = 144/198 (72.73%), Query Frame = 0


Query: 10  VVPEKLMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFA 69
           VVPE  +++V  TL  +++++  L   L++AEPEVLA MQPLQRA++M LLA  TTTL+ 
Sbjct: 15  VVPESAIEAVNQTLAYLKELKPQLEQMLTLAEPEVLAAMQPLQRAKTMHLLAEATTTLYE 74

Query: 70  LKLRCTGVHLDDHPIKSEL--IDNFAFKF-----VHEAPLKRSTTLNYQAATRFIEHSLP 129
           L+LRCTGV  DDH +KSE+  I+ +  KF       + PL+ +T LN QAATRFIEHSLP
Sbjct: 75  LRLRCTGVDPDDHRVKSEIERINVYREKFQKCVDQSKGPLRPTTVLNRQAATRFIEHSLP 134

Query: 130 DLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSSDKQSVQTAAKDFLEKAARELLGD 189
           DLT  QK S+RD+S+G+  +++  E +  +KRKYQS++KQSVQ+AAKDFLEKAARE++G 
Sbjct: 135 DLTSTQKQSIRDLSKGEKSRIRYSETSA-RKRKYQSNEKQSVQSAAKDFLEKAAREIIGH 194

Query: 190 SNGRLQGPL--CGDASDD 199
           +   L+GPL    D SDD
Sbjct: 195 NENGLKGPLVAAADGSDD 211

The following BLAST results are available for this feature:

BLAST of HG10014333 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608310.1	9.9e-90	88.18	Nuclear nucleic acid-binding protein C1D, partial [Cucurbita argyrosperma subsp....	[more]
XP_008452844.1	3.2e-88	87.68	PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo] >KAA0064576.1...	[more]
XP_038897508.1	5.5e-88	87.14	nuclear nucleic acid-binding protein C1D [Benincasa hispida]	[more]
XP_004145496.1	1.6e-87	87.20	nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypotheti...	[more]
XP_022939979.1	4.0e-83	82.38	nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata] >XP_022939980...	[more]

BLAST of HG10014333 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3KPR1	4.2e-06	28.57	Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 S...	[more]
Q5ZHS3	2.1e-05	27.68	Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV...	[more]
Q5XJ97	7.8e-05	24.62	Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1	[more]

BLAST of HG10014333 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D8Y3	1.5e-88	87.68	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BUS6	1.5e-88	87.68	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742...	[more]
A0A0A0L118	7.7e-88	87.20	Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651...	[more]
A0A6J1FIR0	2.0e-83	82.38	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1F700	9.7e-83	82.30	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of HG10014333 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25080.1	5.5e-46	54.04	Sas10/Utp3/C1D family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..159
None	No IPR available	PANTHER	PTHR15341:SF3	NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D	coord: 10..191
IPR011082	Exosome-associated factor Rrp47/DNA strand repair C1D	PANTHER	PTHR15341	SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR	coord: 10..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014333.1	HG10014333.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000178	exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding