HG10014292 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014292
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transmembrane protein
Location	Chr02: 9221382 .. 9221741 (-)
RNA-Seq Expression	HG10014292
Synteny	HG10014292

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTGGGATTGGTGCTACGTCGAGGAGGAGCCGGTTTTCTTCCTACGACCGGCTGTTGGCAGTAGGACTCGGCCTTCTTGCAGTGGTTTCGCCACTCTATATCGACCGGAGACCGAGCATCGAAGCAGACGAGGAGGAGGAATCATCCATTAAACTTGGCTTCTGGTTGCCTGCTCTTCTCATGACCTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGTGCTAGATTTGATGCTTATTGGATTCACAGAGTTGGTGGCTCTTCTTGTGGCATATTCATCATTCTTCTGCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTATTGTTCTGGGAGTCTTAG

mRNA sequence

ATGGAGGTTGGGATTGGTGCTACGTCGAGGAGGAGCCGGTTTTCTTCCTACGACCGGCTGTTGGCAGTAGGACTCGGCCTTCTTGCAGTGGTTTCGCCACTCTATATCGACCGGAGACCGAGCATCGAAGCAGACGAGGAGGAGGAATCATCCATTAAACTTGGCTTCTGGTTGCCTGCTCTTCTCATGACCTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGTGCTAGATTTGATGCTTATTGGATTCACAGAGTTGGTGGCTCTTCTTGTGGCATATTCATCATTCTTCTGCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTATTGTTCTGGGAGTCTTAG

Coding sequence (CDS)

ATGGAGGTTGGGATTGGTGCTACGTCGAGGAGGAGCCGGTTTTCTTCCTACGACCGGCTGTTGGCAGTAGGACTCGGCCTTCTTGCAGTGGTTTCGCCACTCTATATCGACCGGAGACCGAGCATCGAAGCAGACGAGGAGGAGGAATCATCCATTAAACTTGGCTTCTGGTTGCCTGCTCTTCTCATGACCTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGTGCTAGATTTGATGCTTATTGGATTCACAGAGTTGGTGGCTCTTCTTGTGGCATATTCATCATTCTTCTGCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTATTGTTCTGGGAGTCTTAG

Protein sequence

MEVGIGATSRRSRFSSYDRLLAVGLGLLAVVSPLYIDRRPSIEADEEEESSIKLGFWLPALLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLLFWES

Homology

[Close]

BLAST of HG10014292 vs. NCBI nr
Match: XP_038899620.1 (uncharacterized protein LOC120086878 [Benincasa hispida])

HSP 1 Score: 224.6 bits (571), Expect = 4.7e-55
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLLAVGLGLLAVVSPLYIDRRPSIEADEEEESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR +AVGLGLLAVVSPLYIDRRPSIE  EEEESSI LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGLLAVVSPLYIDRRPSIEELEEEESSINLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLLFWES 120
           LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASL+FWES
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of HG10014292 vs. NCBI nr
Match: XP_022977145.1 (uncharacterized protein LOC111477299 [Cucurbita maxima])

HSP 1 Score: 221.1 bits (562), Expect = 5.2e-54
Identity = 107/118 (90.68%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLLAVGLGLLAVVSPLYIDRRPSIEADEEEESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR +AVGLG+LAVVSPLYIDRRPS +A+EEEESS+ LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLLFWE 119
           LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASL+FW+
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of HG10014292 vs. NCBI nr
Match: XP_022936874.1 (uncharacterized protein LOC111443331 [Cucurbita moschata] >XP_023534909.1 uncharacterized protein LOC111796500 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 106/118 (89.83%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLLAVGLGLLAVVSPLYIDRRPSIEADEEEESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR +AVGLG+LAVVSPLYIDRRPS +A+EEEESS+ LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLLFWE 119
           LL+TLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASL+FW+
Sbjct: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of HG10014292 vs. NCBI nr
Match: XP_011654202.1 (uncharacterized protein LOC105435317 [Cucumis sativus] >KGN55379.1 hypothetical protein Csa_012273 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 3.3e-53
Identity = 110/119 (92.44%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLLAVGLGLLAVVSPLYIDRRPSIEADEEEESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR LAVGLGLLAVVSPLYIDRRPSIE  EEEESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLLFWES 120
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFIILLLLAFVLKCKASL+FWES
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of HG10014292 vs. NCBI nr
Match: KAG6591490.1 (hypothetical protein SDJN03_13836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217.2 bits (552), Expect = 7.4e-53
Identity = 105/118 (88.98%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLLAVGLGLLAVVSPLYIDRRPSIEADEEEESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR +AVGLG+LAVVSPLYIDRRPS +A+EEEESS+ LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLLFWE 119
           LL+TLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASL+ W+
Sbjct: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMLWD 118

[Close]

BLAST of HG10014292 vs. ExPASy TrEMBL
Match: A0A6J1ILG7 (uncharacterized protein LOC111477299 OS=Cucurbita maxima OX=3661 GN=LOC111477299 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.5e-54
Identity = 107/118 (90.68%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLLAVGLGLLAVVSPLYIDRRPSIEADEEEESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR +AVGLG+LAVVSPLYIDRRPS +A+EEEESS+ LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLLFWE 119
           LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASL+FW+
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of HG10014292 vs. ExPASy TrEMBL
Match: A0A6J1F9J0 (uncharacterized protein LOC111443331 OS=Cucurbita moschata OX=3662 GN=LOC111443331 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.3e-54
Identity = 106/118 (89.83%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLLAVGLGLLAVVSPLYIDRRPSIEADEEEESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR +AVGLG+LAVVSPLYIDRRPS +A+EEEESS+ LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLLFWE 119
           LL+TLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASL+FW+
Sbjct: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of HG10014292 vs. ExPASy TrEMBL
Match: A0A0A0L2W6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G648010 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 110/119 (92.44%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLLAVGLGLLAVVSPLYIDRRPSIEADEEEESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR LAVGLGLLAVVSPLYIDRRPSIE  EEEESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLLFWES 120
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFIILLLLAFVLKCKASL+FWES
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of HG10014292 vs. ExPASy TrEMBL
Match: A0A5D3D907 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001720 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.7e-53
Identity = 109/119 (91.60%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLLAVGLGLLAVVSPLYIDRRPSIEADEEEESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR LAVGLGLLAVVSPLYIDRRPSIE  EEEESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLLFWES 120
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFIILLLLAFVLKCKASL+FWES
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of HG10014292 vs. ExPASy TrEMBL
Match: A0A1S3BUL9 (uncharacterized protein LOC103493702 OS=Cucumis melo OX=3656 GN=LOC103493702 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.7e-53
Identity = 109/119 (91.60%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLLAVGLGLLAVVSPLYIDRRPSIEADEEEESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR LAVGLGLLAVVSPLYIDRRPSIE  EEEESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLLFWES 120
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFIILLLLAFVLKCKASL+FWES
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of HG10014292 vs. TAIR 10
Match: AT5G21910.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 90.5 bits (223), Expect = 9.8e-19
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLLAVGLGLLAVVSPLYIDRRPSIEADEEEESSIKLGFWLPA 60
           ME G  ++    RF++  +LLA+ L +LAV+SPLYIDR  S E  EEEE      F    
Sbjct: 1   METG-SSSPMMGRFTTSRKLLAISLSVLAVLSPLYIDRL-SEEDLEEEEELFSFMFSFSL 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKAS 114
           LL+ LI  IA  L+ +    RFD YWIHR+ GS  G+ +IL+LL FVL CKAS
Sbjct: 61  LLLLLILAIALSLYSDPSLTRFDPYWIHRLCGSFGGLLVILILLVFVLICKAS 111

The following BLAST results are available for this feature:

BLAST of HG10014292 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899620.1	4.7e-55	94.96	uncharacterized protein LOC120086878 [Benincasa hispida]	[more]
XP_022977145.1	5.2e-54	90.68	uncharacterized protein LOC111477299 [Cucurbita maxima]	[more]
XP_022936874.1	1.5e-53	89.83	uncharacterized protein LOC111443331 [Cucurbita moschata] >XP_023534909.1 unchar...	[more]
XP_011654202.1	3.3e-53	92.44	uncharacterized protein LOC105435317 [Cucumis sativus] >KGN55379.1 hypothetical ...	[more]
KAG6591490.1	7.4e-53	88.98	hypothetical protein SDJN03_13836, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10014292 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10014292 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILG7	2.5e-54	90.68	uncharacterized protein LOC111477299 OS=Cucurbita maxima OX=3661 GN=LOC111477299...	[more]
A0A6J1F9J0	7.3e-54	89.83	uncharacterized protein LOC111443331 OS=Cucurbita moschata OX=3662 GN=LOC1114433...	[more]
A0A0A0L2W6	1.6e-53	92.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G648010 PE=4 SV=1	[more]
A0A5D3D907	4.7e-53	91.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BUL9	4.7e-53	91.60	uncharacterized protein LOC103493702 OS=Cucumis melo OX=3656 GN=LOC103493702 PE=...	[more]

BLAST of HG10014292 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21910.1	9.8e-19	48.67	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758:SF2	TRANSMEMBRANE PROTEIN	coord: 10..113
None	No IPR available	PANTHER	PTHR35758	TRANSMEMBRANE PROTEIN	coord: 10..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014292.1	HG10014292.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane