Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTTCTGGGAATAAGGCGAATTCTTGCCTCTTTGGGGCTTTGGATCGTCGCATTGGCTTTGTTTTCAGCATCATCCGAGGCCCAAATGGCTGTCCCCTCTACCGGACAGCTGTGCATCAGCGATTGCTCCACGTGTCCGGTGATTTGTACAGCGCCTCCTCCTCCACACTCTTACATCCCGCCTCCGCCGAACTTTTATGGTGCGTATATGGCGCCGCCGGCTACACCGTCGTATTCTTTCTGGGGTCCGCCGCCTCCGGTCGCGAATTATTTTTTGGGCGCACAACCTTCCGGTGAGATGCCTCAGACGGTGGGGCCTCGGGATTATTCTTACCCTTATTACTATTTCTATAGTTCAAATTCGGGTTCATTCTCTTATATTTCTAAGTTCGTTGTCTTCTTTGTGTGTTTGTTTCATTTTGTTTTCTGA
mRNA sequence
ATGCCGTTTCTGGGAATAAGGCGAATTCTTGCCTCTTTGGGGCTTTGGATCGTCGCATTGGCTTTGTTTTCAGCATCATCCGAGGCCCAAATGGCTGTCCCCTCTACCGGACAGCTGTGCATCAGCGATTGCTCCACGTGTCCGGTGATTTGTACAGCGCCTCCTCCTCCACACTCTTACATCCCGCCTCCGCCGAACTTTTATGGTGCGTATATGGCGCCGCCGGCTACACCGTCGTATTCTTTCTGGGGTCCGCCGCCTCCGGTCGCGAATTATTTTTTGGGCGCACAACCTTCCGGTGAGATGCCTCAGACGGTGGGGCCTCGGGATTATTCTTACCCTTATTACTATTTCTATAGTTCAAATTCGGGTTCATTCTCTTATATTTCTAAGTTCGTTGTCTTCTTTGTGTGTTTGTTTCATTTTGTTTTCTGA
Coding sequence (CDS)
ATGCCGTTTCTGGGAATAAGGCGAATTCTTGCCTCTTTGGGGCTTTGGATCGTCGCATTGGCTTTGTTTTCAGCATCATCCGAGGCCCAAATGGCTGTCCCCTCTACCGGACAGCTGTGCATCAGCGATTGCTCCACGTGTCCGGTGATTTGTACAGCGCCTCCTCCTCCACACTCTTACATCCCGCCTCCGCCGAACTTTTATGGTGCGTATATGGCGCCGCCGGCTACACCGTCGTATTCTTTCTGGGGTCCGCCGCCTCCGGTCGCGAATTATTTTTTGGGCGCACAACCTTCCGGTGAGATGCCTCAGACGGTGGGGCCTCGGGATTATTCTTACCCTTATTACTATTTCTATAGTTCAAATTCGGGTTCATTCTCTTATATTTCTAAGTTCGTTGTCTTCTTTGTGTGTTTGTTTCATTTTGTTTTCTGA
Protein sequence
MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPPHSYIPPPPNFYGAYMAPPATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF
Homology
BLAST of HG10014268 vs. NCBI nr
Match:
KAE8649911.1 (hypothetical protein Csa_012510 [Cucumis sativus])
HSP 1 Score: 218.8 bits (556), Expect = 3.1e-53
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0
Query: 1 MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPPHSY 60
MPF G RRIL S GLWIVA LFSASS+AQMAVPSTGQLCISDCSTCPVICTAPPPP SY
Sbjct: 1 MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY 60
Query: 61 I-PPPPNFYGAY-MAPPATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPRDYSYPYYYF 120
I PPPPNFYG + MAPPATPSY WGPPPPVANYFLGA+PSGEMPQTVGPRDYSYPYYYF
Sbjct: 61 IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF 120
Query: 121 YSSNS 124
YSSNS
Sbjct: 121 YSSNS 125
BLAST of HG10014268 vs. NCBI nr
Match:
XP_022981722.1 (leucine-rich repeat extensin-like protein 1 [Cucurbita maxima])
HSP 1 Score: 177.2 bits (448), Expect = 1.0e-40
Identity = 99/156 (63.46%), Postives = 108/156 (69.23%), Query Frame = 0
Query: 1 MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAP---PPP 60
MPF G R SLGL ++A ALF S+AQ+ VPST QLCIS C TCPV+CT P P P
Sbjct: 1 MPFQGKMRFSTSLGLCVMAAALFLPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPTPTP 60
Query: 61 HSYI-------PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGP 120
SY PPPP FYG YM PP T SY F GPPPPVANY GAQPSG+MPQTVGP
Sbjct: 61 RSYSSYIPSPPPPPPAFYGGYMGPPPALTSSYFFRGPPPPVANYVSGAQPSGQMPQTVGP 120
Query: 121 RDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF 145
RDYSYPYYYFYSSN GSF+ S F++ F C FH VF
Sbjct: 121 RDYSYPYYYFYSSNLGSFASPSTFILLFACFFHVVF 156
BLAST of HG10014268 vs. NCBI nr
Match:
KAG6608366.1 (Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 169.1 bits (427), Expect = 2.8e-38
Identity = 94/142 (66.20%), Postives = 103/142 (72.54%), Query Frame = 0
Query: 1 MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPP--H 60
MPF G SLGLW++A ALF S+AQ+ VPSTGQLCIS C TCPV+CT P P +
Sbjct: 1 MPFQGKMPFSTSLGLWVMAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYN 60
Query: 61 SYI-PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPRDYSYPY 120
+YI PPPP FYG YM PP T SY GPPPPVANY GAQPSG+MPQTVGPRDYSYPY
Sbjct: 61 TYIPPPPPAFYGGYMGPPPALTSSYFLRGPPPPVANYVSGAQPSGQMPQTVGPRDYSYPY 120
Query: 121 YYFYSSNSGSFSYISKFVVFFV 138
YYFYSSN GS S S F+V V
Sbjct: 121 YYFYSSNLGSSSSPSTFIVLAV 142
BLAST of HG10014268 vs. NCBI nr
Match:
XP_022940707.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])
HSP 1 Score: 167.9 bits (424), Expect = 6.3e-38
Identity = 92/139 (66.19%), Postives = 101/139 (72.66%), Query Frame = 0
Query: 1 MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPP--H 60
MPF G R SLGLW++A ALF S+AQ+ VPSTGQLCIS C TCPV+CT P P +
Sbjct: 1 MPFQGKMRFSTSLGLWVMAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYN 60
Query: 61 SYI-PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPRDYSYPY 120
+YI PPPP FYG YM PP T SY GP PPVANY GAQPSG+MPQTVGPRDYSYPY
Sbjct: 61 TYIPPPPPAFYGGYMGPPPALTSSYFLRGPSPPVANYVSGAQPSGQMPQTVGPRDYSYPY 120
Query: 121 YYFYSSNSGSFSYISKFVV 135
YYFYSSN GS S F+V
Sbjct: 121 YYFYSSNLGSSSSPPTFIV 139
BLAST of HG10014268 vs. NCBI nr
Match:
XP_023523402.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 164.9 bits (416), Expect = 5.3e-37
Identity = 91/134 (67.91%), Postives = 99/134 (73.88%), Query Frame = 0
Query: 18 VALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPP--HSYI---PPPPNFYGAYM 77
+A ALF S+AQ+ VPSTGQLCIS C TCPV+CT P P ++YI PPPP FYG YM
Sbjct: 1 MAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYNTYIPPPPPPPAFYGGYM 60
Query: 78 APP--ATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSYIS 137
PP T SY GPPPPVANY GAQPSG+MPQTVGPRDYSYPYYYFYSSN GS S S
Sbjct: 61 GPPPALTSSYFLRGPPPPVANYVSGAQPSGQMPQTVGPRDYSYPYYYFYSSNLGSSSSPS 120
Query: 138 KFVVFFVCLFHFVF 145
F+V FVC FH VF
Sbjct: 121 TFIVLFVCFFHVVF 134
BLAST of HG10014268 vs. ExPASy TrEMBL
Match:
A0A0A0L054 (Microtubule associated protein (Ase1) OS=Cucumis sativus OX=3659 GN=Csa_4G646240 PE=4 SV=1)
HSP 1 Score: 248.1 bits (632), Expect = 2.3e-62
Identity = 126/145 (86.90%), Postives = 131/145 (90.34%), Query Frame = 0
Query: 1 MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPPHSY 60
MPF G RRIL S GLWIVA LFSASS+AQMAVPSTGQLCISDCSTCPVICTAPPPP SY
Sbjct: 39 MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY 98
Query: 61 I-PPPPNFYGAY-MAPPATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPRDYSYPYYYF 120
I PPPPNFYG + MAPPATPSY WGPPPPVANYFLGA+PSGEMPQTVGPRDYSYPYYYF
Sbjct: 99 IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF 158
Query: 121 YSSNSGSFSYISKFVVFFVCLFHFV 144
YSSNSGSF+YISKF+V FVCL HFV
Sbjct: 159 YSSNSGSFTYISKFIVLFVCLLHFV 183
BLAST of HG10014268 vs. ExPASy TrEMBL
Match:
A0A6J1IUS7 (leucine-rich repeat extensin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111480787 PE=4 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 5.0e-41
Identity = 99/156 (63.46%), Postives = 108/156 (69.23%), Query Frame = 0
Query: 1 MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAP---PPP 60
MPF G R SLGL ++A ALF S+AQ+ VPST QLCIS C TCPV+CT P P P
Sbjct: 1 MPFQGKMRFSTSLGLCVMAAALFLPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPTPTP 60
Query: 61 HSYI-------PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGP 120
SY PPPP FYG YM PP T SY F GPPPPVANY GAQPSG+MPQTVGP
Sbjct: 61 RSYSSYIPSPPPPPPAFYGGYMGPPPALTSSYFFRGPPPPVANYVSGAQPSGQMPQTVGP 120
Query: 121 RDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF 145
RDYSYPYYYFYSSN GSF+ S F++ F C FH VF
Sbjct: 121 RDYSYPYYYFYSSNLGSFASPSTFILLFACFFHVVF 156
BLAST of HG10014268 vs. ExPASy TrEMBL
Match:
A0A6J1FKD3 (leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111446222 PE=4 SV=1)
HSP 1 Score: 167.9 bits (424), Expect = 3.0e-38
Identity = 92/139 (66.19%), Postives = 101/139 (72.66%), Query Frame = 0
Query: 1 MPFLGIRRILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPPPP--H 60
MPF G R SLGLW++A ALF S+AQ+ VPSTGQLCIS C TCPV+CT P P +
Sbjct: 1 MPFQGKMRFSTSLGLWVMAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYN 60
Query: 61 SYI-PPPPNFYGAYMAPP--ATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPRDYSYPY 120
+YI PPPP FYG YM PP T SY GP PPVANY GAQPSG+MPQTVGPRDYSYPY
Sbjct: 61 TYIPPPPPAFYGGYMGPPPALTSSYFLRGPSPPVANYVSGAQPSGQMPQTVGPRDYSYPY 120
Query: 121 YYFYSSNSGSFSYISKFVV 135
YYFYSSN GS S F+V
Sbjct: 121 YYFYSSNLGSSSSPPTFIV 139
BLAST of HG10014268 vs. ExPASy TrEMBL
Match:
A0A2N9HA71 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39158 PE=4 SV=1)
HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 74/161 (45.96%), Postives = 88/161 (54.66%), Query Frame = 0
Query: 15 LWIVA-LALFSASSEAQMAVPSTGQLCISDCSTCPVICTAPP-----------------P 74
+WI+ L L + +SE Q+ PS+G LCISDC+TCPVIC+ PP P
Sbjct: 20 IWIMGLLMLVNVTSEDQIGSPSSGSLCISDCATCPVICSPPPPLQESYSPPSPPVQHHSP 79
Query: 75 PHSYI---PPPPNFYGAYMAPPATP----SYSFWGPPPPVANYFLGAQPSG----EMPQT 134
P SY PPPP+ + PPA+P SYS WG PPP YF PSG MP
Sbjct: 80 PKSYYANPPPPPSPPSSLTPPPASPPKASSYSSWGTPPPPFMYFNNMPPSGNINNRMPPM 139
Query: 135 VGPRDYSYPYYYFYSSN-SGSFSYISKFVVFFVC-LFHFVF 145
GP DY YPYYYFYSS + S S + F F + LFHFVF
Sbjct: 140 AGPHDYPYPYYYFYSSKAASSLSLDASFYYFMLLFLFHFVF 180
BLAST of HG10014268 vs. ExPASy TrEMBL
Match:
A0A5N6RNK5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017980 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 3.5e-18
Identity = 70/156 (44.87%), Postives = 92/156 (58.97%), Query Frame = 0
Query: 13 LGLWIVALALFSASSEA-QMAVPSTGQLCISDCSTCPVICTAPPPP--HSYIPPPPNFYG 72
L + I+ L +F+ + A Q+ PST +LCISDC+TCPVIC+ PPPP S+ PP P+ +
Sbjct: 21 LRIGIMGLLMFAGMTSADQIKAPSTSELCISDCATCPVICSPPPPPLLKSFPPPSPSAHH 80
Query: 73 AYMAPP------------ATP----SYSFWG-PPPPVANYFLGAQPSG---EMPQTVG-P 132
+ +PP ATP Y+ WG PPPP Y+ PSG +P T G P
Sbjct: 81 SSPSPPPLLKPFPPPSPAATPPEAAPYTSWGSPPPPPFKYYNNMPPSGPVTPVPPTGGVP 140
Query: 133 RDYSYPYYYFYSSNSGSFSYISKFVVFFVCLFHFVF 145
RDY YPYYYFY+S++ S S + FV + LFHFVF
Sbjct: 141 RDYPYPYYYFYASHAPSLSLDASFVFMLLFLFHFVF 176
BLAST of HG10014268 vs. TAIR 10
Match:
AT5G11990.1 (proline-rich family protein )
HSP 1 Score: 47.8 bits (112), Expect = 8.8e-06
Identity = 46/169 (27.22%), Postives = 72/169 (42.60%), Query Frame = 0
Query: 9 ILASLGLWIVALALFSASSEAQMAVPSTGQLCISDCSTCPVICT---------------- 68
I+ + L +V + S S + + P LCIS+CSTCP IC+
Sbjct: 4 IVIIIALVMVMVVASSPSDQTNVLTP----LCISECSTCPTICSPPPSKPSPSMSPPPSP 63
Query: 69 --------APPPPHSYIP--------PPPNFYGAYMAPPATPSYSFWGPPPPVANYFLGA 128
PPPPH + P PPP + PP + PPPP++ G+
Sbjct: 64 SLPLSSSPPPPPPHKHSPPPLSQSLSPPPLITVIHPPPPRFYYFESTPPPPPLSPDGKGS 123
Query: 129 QPS------GEMPQTVGPRD--YSYPYYYFYSSNSGSFSYISKFVVFFV 138
PS Q+ G + Y +PY+YFY++++ + + S F++ V
Sbjct: 124 PPSVPSSPPSPKGQSQGQQQPPYPFPYFYFYTASNATLLFSSSFLIALV 168
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8649911.1 | 3.1e-53 | 88.00 | hypothetical protein Csa_012510 [Cucumis sativus] | [more] |
| XP_022981722.1 | 1.0e-40 | 63.46 | leucine-rich repeat extensin-like protein 1 [Cucurbita maxima] | [more] |
| KAG6608366.1 | 2.8e-38 | 66.20 | Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma su... | [more] |
| XP_022940707.1 | 6.3e-38 | 66.19 | leucine-rich repeat extensin-like protein 2 [Cucurbita moschata] | [more] |
| XP_023523402.1 | 5.3e-37 | 67.91 | leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L054 | 2.3e-62 | 86.90 | Microtubule associated protein (Ase1) OS=Cucumis sativus OX=3659 GN=Csa_4G646240... | [more] |
| A0A6J1IUS7 | 5.0e-41 | 63.46 | leucine-rich repeat extensin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11... | [more] |
| A0A6J1FKD3 | 3.0e-38 | 66.19 | leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC... | [more] |
| A0A2N9HA71 | 1.4e-19 | 45.96 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39158 PE=4 SV=1 | [more] |
| A0A5N6RNK5 | 3.5e-18 | 44.87 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017980 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G11990.1 | 8.8e-06 | 27.22 | proline-rich family protein | [more] |
