HG10014104 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10014104
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr02: 7611759 .. 7612082 (-)
RNA-Seq ExpressionHG10014104
SyntenyHG10014104
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCAATATCACTCAATCTCTTTCTCTCTATAGCAGCCGCCCTCTTCATTTTATCTTCCATCTCCAATATAGAAGCAAGATTCCTACCGATGAAGCATCCCAACGTCGATATTCACGAAAATCTCCACCGTGAGATCGTAGAAACTGTCGCCGTTGCTCCTCTCAAGTCGGGGCCACCAGCATTTGATCACCACACTCCCTTAGCTGCTAGCGACGCGGAGGTTCTAGGCGGCGACTTCCGTCCAACCACCCCGGGCCACAGCCCTGGAGCCGGTCACTCTCTTGCACCAGCCAGCCATATGGATTCCAAAATTCATTAG

mRNA sequence

ATGACTGCAATATCACTCAATCTCTTTCTCTCTATAGCAGCCGCCCTCTTCATTTTATCTTCCATCTCCAATATAGAAGCAAGATTCCTACCGATGAAGCATCCCAACGTCGATATTCACGAAAATCTCCACCGTGAGATCGTAGAAACTGTCGCCGTTGCTCCTCTCAAGTCGGGGCCACCAGCATTTGATCACCACACTCCCTTAGCTGCTAGCGACGCGGAGGTTCTAGGCGGCGACTTCCGTCCAACCACCCCGGGCCACAGCCCTGGAGCCGGTCACTCTCTTGCACCAGCCAGCCATATGGATTCCAAAATTCATTAG

Coding sequence (CDS)

ATGACTGCAATATCACTCAATCTCTTTCTCTCTATAGCAGCCGCCCTCTTCATTTTATCTTCCATCTCCAATATAGAAGCAAGATTCCTACCGATGAAGCATCCCAACGTCGATATTCACGAAAATCTCCACCGTGAGATCGTAGAAACTGTCGCCGTTGCTCCTCTCAAGTCGGGGCCACCAGCATTTGATCACCACACTCCCTTAGCTGCTAGCGACGCGGAGGTTCTAGGCGGCGACTTCCGTCCAACCACCCCGGGCCACAGCCCTGGAGCCGGTCACTCTCTTGCACCAGCCAGCCATATGGATTCCAAAATTCATTAG

Protein sequence

MTAISLNLFLSIAAALFILSSISNIEARFLPMKHPNVDIHENLHREIVETVAVAPLKSGPPAFDHHTPLAASDAEVLGGDFRPTTPGHSPGAGHSLAPASHMDSKIH
Homology
BLAST of HG10014104 vs. NCBI nr
Match: TYK20222.1 (hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-28
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 0

Query: 10  LSIAAALFILSS---ISNIEARFLPMKHPN-VDIHENLHREIVETVAVAPLKSGPPAFDH 69
           +S  AA+ ILSS   IS+ +AR LPM++P+ V+I E+LHR+ VETVAVAPLKSGP AFDH
Sbjct: 9   ISTFAAILILSSTFNISHTQARLLPMENPDLVNIPEDLHRKTVETVAVAPLKSGPLAFDH 68

Query: 70  HTPLAASDAEVLGGDFRPTTPGHSPGAGHSLAPASHMDSKIH 108
            T  A  D EVLGGDFRPTTPGHSPGAGHS+AP SHMDSKIH
Sbjct: 69  DTSFATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

BLAST of HG10014104 vs. NCBI nr
Match: KAA0064365.1 (hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 69/102 (67.65%), Postives = 82/102 (80.39%), Query Frame = 0

Query: 10  LSIAAALFILSS---ISNIEARFLPMKHPN-VDIHENLHREIVETVAVAPLKSGPPAFDH 69
           +S  AA+ ILSS   IS+ +AR LP+++P+ V+I E++HR+ VETVAVAPLKSGP AFDH
Sbjct: 9   ISTFAAILILSSTFNISHTQARLLPVENPDLVNIPEDIHRKTVETVAVAPLKSGPLAFDH 68

Query: 70  HTPLAASDAEVLGGDFRPTTPGHSPGAGHSLAPASHMDSKIH 108
            T  A  D EVLGGDFRPTT GHSPGAGHS+AP SHMDSKIH
Sbjct: 69  DTSFATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

BLAST of HG10014104 vs. NCBI nr
Match: KAG6591363.1 (Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-23
Identity = 68/106 (64.15%), Postives = 73/106 (68.87%), Query Frame = 0

Query: 6   LNLFLSIAAALFILSSISNI---EARFLPMKHPNVDIHENLHREIVETVAVAPLKSGPPA 65
           + L  SI  A  ILSSI NI     R LP++HP V    NLHR+IVET  VAPL S PPA
Sbjct: 1   MTLINSICMAFLILSSICNISHTHGRLLPVEHPIVG---NLHRKIVETAGVAPLGSRPPA 60

Query: 66  FDHHTPLAA-SDAEVLGGDFRPTTPGHSPGAGHSLAPASHMDSKIH 108
           F   T      DAEVLGGDFRPTTPGHSPG GHSLAPASH+DSKIH
Sbjct: 61  FQRTTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103

BLAST of HG10014104 vs. NCBI nr
Match: KGN55172.1 (hypothetical protein Csa_012400 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 8.0e-22
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 0

Query: 1   MTAISLNLFLSIAAALFILSS---ISNIEARFLPMKH-PNVDIHENLHREIVETVAVAPL 60
           M+  S+ L +S   A+ ILSS   +S+ +AR  P K+   V+I ++LH +I ETVAVAPL
Sbjct: 1   MSTPSIKL-ISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPL 60

Query: 61  KSGPPAFDHHTPLAASDAEVLGGDFRPTTPGHSPGAGHSLAPASHMDSKIH 108
           KS P AFD  T    S+AEVLGGDFRPTTPGHSPGAGHS+AP SHMDSKIH
Sbjct: 61  KSEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

BLAST of HG10014104 vs. NCBI nr
Match: KAG7024239.1 (Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-18
Identity = 59/92 (64.13%), Postives = 63/92 (68.48%), Query Frame = 0

Query: 15  ALFILSSISNI---EARFLPMKHPNVDIHENLHREIVETVAVAPLKSGPPAFDHHTPLAA 74
           A  ILSSI NI     R LP++HP V  H   HR+IVET  VAPL S PPAF   T    
Sbjct: 2   AFLILSSICNISHTHGRLLPVEHPIVGNH---HRKIVETAGVAPLGSRPPAFQRTTSSPG 61

Query: 75  -SDAEVLGGDFRPTTPGHSPGAGHSLAPASHM 103
             DAEVLGGDFRPTTPGHSPG GHSLAPASH+
Sbjct: 62  DGDAEVLGGDFRPTTPGHSPGVGHSLAPASHI 90

BLAST of HG10014104 vs. ExPASy TrEMBL
Match: A0A5D3D9H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003590 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.6e-28
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 0

Query: 10  LSIAAALFILSS---ISNIEARFLPMKHPN-VDIHENLHREIVETVAVAPLKSGPPAFDH 69
           +S  AA+ ILSS   IS+ +AR LPM++P+ V+I E+LHR+ VETVAVAPLKSGP AFDH
Sbjct: 9   ISTFAAILILSSTFNISHTQARLLPMENPDLVNIPEDLHRKTVETVAVAPLKSGPLAFDH 68

Query: 70  HTPLAASDAEVLGGDFRPTTPGHSPGAGHSLAPASHMDSKIH 108
            T  A  D EVLGGDFRPTTPGHSPGAGHS+AP SHMDSKIH
Sbjct: 69  DTSFATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

BLAST of HG10014104 vs. ExPASy TrEMBL
Match: A0A5A7VEP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00660 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.8e-27
Identity = 69/102 (67.65%), Postives = 82/102 (80.39%), Query Frame = 0

Query: 10  LSIAAALFILSS---ISNIEARFLPMKHPN-VDIHENLHREIVETVAVAPLKSGPPAFDH 69
           +S  AA+ ILSS   IS+ +AR LP+++P+ V+I E++HR+ VETVAVAPLKSGP AFDH
Sbjct: 9   ISTFAAILILSSTFNISHTQARLLPVENPDLVNIPEDIHRKTVETVAVAPLKSGPLAFDH 68

Query: 70  HTPLAASDAEVLGGDFRPTTPGHSPGAGHSLAPASHMDSKIH 108
            T  A  D EVLGGDFRPTT GHSPGAGHS+AP SHMDSKIH
Sbjct: 69  DTSFATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

BLAST of HG10014104 vs. ExPASy TrEMBL
Match: A0A0A0L3I5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.9e-22
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 0

Query: 1   MTAISLNLFLSIAAALFILSS---ISNIEARFLPMKH-PNVDIHENLHREIVETVAVAPL 60
           M+  S+ L +S   A+ ILSS   +S+ +AR  P K+   V+I ++LH +I ETVAVAPL
Sbjct: 1   MSTPSIKL-ISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPL 60

Query: 61  KSGPPAFDHHTPLAASDAEVLGGDFRPTTPGHSPGAGHSLAPASHMDSKIH 108
           KS P AFD  T    S+AEVLGGDFRPTTPGHSPGAGHS+AP SHMDSKIH
Sbjct: 61  KSEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

BLAST of HG10014104 vs. TAIR 10
Match: AT5G66815.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 6.1e-04
Identity = 22/40 (55.00%), Postives = 24/40 (60.00%), Query Frame = 0

Query: 58  SGPPAFDHHTPLAASDAEVLGGDFRPTTPGHSPGAGHSLA 98
           S PP     +     DAE    DFRPTTPGHSPG GHSL+
Sbjct: 68  SPPPPPPPPSQSGGKDAE----DFRPTTPGHSPGIGHSLS 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK20222.13.3e-2870.59hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa][more]
KAA0064365.11.4e-2667.65hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa][more]
KAG6591363.17.2e-2364.15Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia][more]
KGN55172.18.0e-2260.36hypothetical protein Csa_012400 [Cucumis sativus][more]
KAG7024239.11.8e-1864.13Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. arg... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D9H81.6e-2870.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VEP26.8e-2767.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0L3I53.9e-2260.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G66815.16.1e-0455.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10014104.1HG10014104.1mRNA