HG10013960 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013960
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	Chr02: 6439498 .. 6441387 (-)
RNA-Seq Expression	HG10013960
Synteny	HG10013960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGGCTCAAGGTTTCGGATGCTAATATGGTTGTTTACGTTCACCCATCCAAAAGTAAGAAGGTGTCGCAAGCAGTGCTTCGAGAGCTCGGCGCTATGCTTTTAAAGTAAGTTAAACTTCTTTAAGGCTTTCAACAATTCTAGTGTCTAGTCTCTTGCAATCACAACCTTTTCCAGTTATTGATAGTGTTGTTTTGTTGAATATCTTGGTTGGGGATACTATCTGTTCATGGTAGAAGTTAGACTGGTACGAACTTGAATTTAGCCGACCTTTTAACTTTGAATTCAGCTTCAATTTTAGCTTAGGATTAGATTATTATTGTTTCTTTCCGCATTGTTATCAAGTGAAGAATTTTCTTTGCTGGCTTGCTATTCTGTATGGAAGAAATAAACACCTGGGTTGTGCTGTTGTTTGTGAACTCAGAAAGGAAGTTTCTGTAACTCTCACGATTTTAGGGGGGGGGAAATAATTTATTCATTATGGATTATGGAATATCAGATGTTTTTCATTCTCTTTAAACTCAAAGCTGCGAAGTTTAAACTTCTAGTGATTGTCATCACTGCATCTTTTGCTCTCATTTAATAAGTATTCAAGTTCATTGATGGGGTAGATACCTTTGAATTTCGATCATTAACTGCATTTTTTTTTTATTGTTTTCCTCGTGTAGATTTGATGAAAAATTTGAAGGTGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAATGCGAAGATTCTATCTGGAGTGCATCCCTATTTTAGCGTGACAATAAATGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGGTTGGTTTTCTATGATTCTCATTGTATGTGAAGGAGTTTCATTTGTTCATCTCTCCGTTGTTTCCACTAGGAAAACAACACATCTAGAATTAAGTAATTAATTAACAAACTTTCATTTTAACACTGTTAAGGTACTTCATTGCATTATGATGCTAGACATATGAAATTACAAGAGGCCAAATTTTTTATTCCTCTTGTTCATGCTTTTCTGACCGTTTTGTTATTACTTTAGAAGGAAAGGTGGTGAAGCTTAGGCAAGAAGCAATCCATGTTATTGTCTTAGGTTTCGCCTCTGCTGTAATAACTGACGAAGACATTCGCGACGAATTTAAGCATAAAACAGTATGTTTTGTGCATTGTACTTGTGAATTCATACCTTTCCCTCTGTTAGATATATAAGAAGGAAGTTTATGTTCTTGTCTTGATTGTATTGTGCATTGATTTCTACATAGAAACATGGAGAAGAAATGTTTGTCAACAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACAATTTTTGGTGAAGAGGTTAGATTCCGTTTCCTTTAATTACGTTTATTCTGTAACATTTAAGTGGAAAGTTATTCTTGAAGTTTTCATCCATATAATTGAGGGCCAGAACCAAAGCTCATATCTGATTGATAGTCTGCCAAATTTATCAATATTTCCTGATTATTCTTCTTCTTCAGTAATCTAAATACCTTGATGATATAACAAGCGACTTAACTCAACCTTGCAGTTTTTATGAGGAAATATTGCATATCTCTGGATCTCTAGTTCCATCTCACACAGGGAGCATCCATTGGTTGGAGAAGAATTCGGTTGAAGGTTCAGTAAGTAATAAGTGAGAAACTAAACTCTATGAGGTTTTGTGCTATAATCCCCAAATCTCTTATTCTAACCTTTTCCCACTTAATTTGTTTGTAGCAGCAAAAAGAAGATGAGAGAAAACGAGGTGATGGGTCAGGATAGCATTGCCACGGATGCAAATGCAGTTATCTTGAACAATGACCATCAGTTAAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGA

mRNA sequence

ATGGAGGGGCTCAAGGTTTCGGATGCTAATATGGTTGTTTACGTTCACCCATCCAAAAGTAAGAAGGTGTCGCAAGCAGTGCTTCGAGAGCTCGGCGCTATGCTTTTAAAATTTGATGAAAAATTTGAAGGTGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAATGCGAAGATTCTATCTGGAGTGCATCCCTATTTTAGCGTGACAATAAATGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAAGGAAAGGTGGTGAAGCTTAGGCAAGAAGCAATCCATGTTATTGTCTTAGGTTTCGCCTCTGCTGTAATAACTGACGAAGACATTCGCGACGAATTTAAGCATAAAACAAAACATGGAGAAGAAATGTTTGTCAACAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACAATTTTTGGTGAAGAGTTTTTATGAGGAAATATTGCATATCTCTGGATCTCTAGTTCCATCTCACACAGGGAGCATCCATTGGTTGGAGAAGAATTCGGTTGAAGGTTCAGTAAGTAATAACAGCAAAAAGAAGATGAGAGAAAACGAGGTGATGGGTCAGGATAGCATTGCCACGGATGCAAATGCAGTTATCTTGAACAATGACCATCAGTTAAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGA

Coding sequence (CDS)

ATGGAGGGGCTCAAGGTTTCGGATGCTAATATGGTTGTTTACGTTCACCCATCCAAAAGTAAGAAGGTGTCGCAAGCAGTGCTTCGAGAGCTCGGCGCTATGCTTTTAAAATTTGATGAAAAATTTGAAGGTGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAATGCGAAGATTCTATCTGGAGTGCATCCCTATTTTAGCGTGACAATAAATGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAAGGAAAGGTGGTGAAGCTTAGGCAAGAAGCAATCCATGTTATTGTCTTAGGTTTCGCCTCTGCTGTAATAACTGACGAAGACATTCGCGACGAATTTAAGCATAAAACAAAACATGGAGAAGAAATGTTTGTCAACAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACAATTTTTGGTGAAGAGTTTTTATGAGGAAATATTGCATATCTCTGGATCTCTAGTTCCATCTCACACAGGGAGCATCCATTGGTTGGAGAAGAATTCGGTTGAAGGTTCAGTAAGTAATAACAGCAAAAAGAAGATGAGAGAAAACGAGGTGATGGGTCAGGATAGCATTGCCACGGATGCAAATGCAGTTATCTTGAACAATGACCATCAGTTAAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGA

Protein sequence

MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENEVMGQDSIATDANAVILNNDHQLKTKKQKTTRIS

Homology

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BLAST of HG10013960 vs. NCBI nr
Match: XP_008466499.1 (PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >XP_016903501.1 PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >KAA0063270.1 putative DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo var. makuwa] >TYK31504.1 putative DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo var. makuwa])

HSP 1 Score: 397.5 bits (1020), Expect = 7.8e-107
Identity = 213/232 (91.81%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYF VTI AKLLLFSPKPNMLLEGKVVKLRQE+IHVIVLGFASAVIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNS 180
           KH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVKSF EEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDHQLKTKKQKTTRIS 231
           VEGSVS +SKKKMRENE  VM QD++ TD NAVIL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 231

[Close]

BLAST of HG10013960 vs. NCBI nr
Match: XP_038898978.1 (uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida])

HSP 1 Score: 395.6 bits (1015), Expect = 3.0e-106
Identity = 207/232 (89.22%), Postives = 222/232 (95.69%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           M+GLKVSDANMVVYVHPSKSKKVSQAVLR LGAMLLKFDEKFEGVLLAYEAKIIDK AKI
Sbjct: 1   MDGLKVSDANMVVYVHPSKSKKVSQAVLRVLGAMLLKFDEKFEGVLLAYEAKIIDKIAKI 60

Query: 61  LSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYF VTI AKLLLFSPKPNML+EGKVVKLRQE+IHVIVLGFASAVIT+EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLVEGKVVKLRQESIHVIVLGFASAVITNEDIRDEF 120

Query: 121 KHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNS 180
           KH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVKSF EEILHI+GSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHIAGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSNNSKKKMREN--EVMGQDSIATDANAVILNNDHQLKTKKQKTTRIS 231
           VEG+V+++SKKKMREN  EVM QDS+AT+ NA+ILNNDHQ KTKKQKTTRIS
Sbjct: 181 VEGTVTSSSKKKMRENEGEVMLQDSVATEVNALILNNDHQSKTKKQKTTRIS 232

[Close]

BLAST of HG10013960 vs. NCBI nr
Match: XP_038889707.1 (uncharacterized protein LOC120079556 isoform X1 [Benincasa hispida] >XP_038889708.1 uncharacterized protein LOC120079556 isoform X1 [Benincasa hispida])

HSP 1 Score: 395.2 bits (1014), Expect = 3.9e-106
Identity = 205/230 (89.13%), Postives = 218/230 (94.78%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDAN+VVYVHPSKSKKVSQAVLRELG MLLKFDEKFEGVLLAYEA IIDKNAKI
Sbjct: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGTMLLKFDEKFEGVLLAYEANIIDKNAKI 60

Query: 61  LSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYF VTI AKLLLFSPKPNMLLEGKVVKLRQE+IHVIVLGF+S VITDEDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFSSGVITDEDIRDEF 120

Query: 121 KHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNS 180
           KH+TKHGEEMFV+R HKHHVIKVGTMI+FLVKSF EEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRVHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSNNSKKKMRENEVMGQDSIATDANAVILNNDHQLKTKKQKTTRIS 231
           VEGSV+N+SKKK RENE  G+ S++TDANA+ILNNDHQ KTK+QKTTRIS
Sbjct: 181 VEGSVTNSSKKKTRENE--GKASVSTDANALILNNDHQSKTKRQKTTRIS 228

[Close]

BLAST of HG10013960 vs. NCBI nr
Match: XP_008466500.1 (PREDICTED: uncharacterized protein LOC103503892 isoform X2 [Cucumis melo])

HSP 1 Score: 392.9 bits (1008), Expect = 1.9e-105
Identity = 213/232 (91.81%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYF VTI AKLLLFSPKPNMLLEGKVVKLRQE+IHVIVLGFASAVIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNS 180
           KH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVKSF EEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDHQLKTKKQKTTRIS 231
           VEGSVS  SKKKMRENE  VM QD++ TD NAVIL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSVS-MSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 230

[Close]

BLAST of HG10013960 vs. NCBI nr
Match: XP_011652444.1 (uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737671.1 uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737672.1 uncharacterized protein LOC101216589 [Cucumis sativus] >KGN60019.1 hypothetical protein Csa_001209 [Cucumis sativus])

HSP 1 Score: 391.0 bits (1003), Expect = 7.3e-105
Identity = 208/232 (89.66%), Postives = 217/232 (93.53%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKK+SQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKISQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYF VTI AKLLLFSPKPNMLLEGKVVKLRQE+IHVIVLGFASAVIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNS 180
           KH+TKHGEEMFV+RAHKHH+IKVGTMI+ LVKSF EEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHIIKVGTMIRLLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDHQLKTKKQKTTRIS 231
           VEGSV+  SK+KMRENE  V  QDS+ TD NAVILNNDHQ KTKKQK TRIS
Sbjct: 181 VEGSVT-MSKRKMRENEGGVTLQDSVGTDVNAVILNNDHQPKTKKQKPTRIS 231

[Close]

BLAST of HG10013960 vs. ExPASy Swiss-Prot
Match: O43036 (DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa43 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.2e-05
Identity = 38/163 (23.31%), Postives = 83/163 (50.92%), Query Frame = 0


Query: 10  NMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYE-AKIIDKNAKILSGVHPYF 69
           ++ + + P  S+    A+   + +M+L    +  G++LAY+  + ++K+AK++    P+ 
Sbjct: 12  DLYLSIAPGHSRDPLNAIQEHMDSMILSKLPRINGIVLAYDNIRFLEKSAKVMYD-SPFS 71

Query: 70  SVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDI-RDEFKHKTKHG 129
            + +   +L+FSPK    LEGK+  +    I +++LG  +A I  + I +D    +    
Sbjct: 72  FIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLILGIFNASIPRKSIPKDWIFIEPDTT 131

Query: 130 EEMFVNRAHKHHVIKVGTMIQFLVKSFYEE--ILHISGSLVPS 169
           EE    + +  ++++ G  ++F+V     E  +  + G+L  S
Sbjct: 132 EEQGRWKTNDGNILEPGKDLEFVVDGIQREAGLTMVQGTLANS 173

[Close]

BLAST of HG10013960 vs. ExPASy TrEMBL
Match: A0A1S4E5I5 (uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.8e-107
Identity = 213/232 (91.81%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYF VTI AKLLLFSPKPNMLLEGKVVKLRQE+IHVIVLGFASAVIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNS 180
           KH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVKSF EEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDHQLKTKKQKTTRIS 231
           VEGSVS +SKKKMRENE  VM QD++ TD NAVIL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 231

[Close]

BLAST of HG10013960 vs. ExPASy TrEMBL
Match: A0A5D3E6A0 (Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008220 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.8e-107
Identity = 213/232 (91.81%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYF VTI AKLLLFSPKPNMLLEGKVVKLRQE+IHVIVLGFASAVIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNS 180
           KH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVKSF EEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDHQLKTKKQKTTRIS 231
           VEGSVS +SKKKMRENE  VM QD++ TD NAVIL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 231

[Close]

BLAST of HG10013960 vs. ExPASy TrEMBL
Match: A0A1S3CRF8 (uncharacterized protein LOC103503892 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.3e-106
Identity = 213/232 (91.81%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYF VTI AKLLLFSPKPNMLLEGKVVKLRQE+IHVIVLGFASAVIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNS 180
           KH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVKSF EEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDHQLKTKKQKTTRIS 231
           VEGSVS  SKKKMRENE  VM QD++ TD NAVIL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSVS-MSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 230

[Close]

BLAST of HG10013960 vs. ExPASy TrEMBL
Match: A0A0A0LGG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866520 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 3.5e-105
Identity = 208/232 (89.66%), Postives = 217/232 (93.53%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKK+SQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKISQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYF VTI AKLLLFSPKPNMLLEGKVVKLRQE+IHVIVLGFASAVIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNS 180
           KH+TKHGEEMFV+RAHKHH+IKVGTMI+ LVKSF EEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHIIKVGTMIRLLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDHQLKTKKQKTTRIS 231
           VEGSV+  SK+KMRENE  V  QDS+ TD NAVILNNDHQ KTKKQK TRIS
Sbjct: 181 VEGSVT-MSKRKMRENEGGVTLQDSVGTDVNAVILNNDHQPKTKKQKPTRIS 231

[Close]

BLAST of HG10013960 vs. ExPASy TrEMBL
Match: A0A6J1D5Y9 (uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016757 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.3e-103
Identity = 198/232 (85.34%), Postives = 217/232 (93.53%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDAN+VVYVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAY+AKI DK+AKI
Sbjct: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60

Query: 61  LSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYF VT+ AKLLLFSPKPNMLLEGKVVKLRQE++HVIVLGFASA ITDEDIRDEF
Sbjct: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120

Query: 121 KHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNS 180
           KH+TKH EEMFV+RAHKHHVIKVGTMI+FLVKSF EEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSNNSKKKMREN--EVMGQDSIATDANAVILNNDHQLKTKKQKTTRIS 231
           +EGSV++  +KK R+N  E + QDS+ATD NA+ILNNDHQ KTKKQKT+RIS
Sbjct: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of HG10013960 vs. TAIR 10
Match: AT1G75670.1 (DNA-directed RNA polymerases )

HSP 1 Score: 223.0 bits (567), Expect = 2.4e-58
Identity = 102/194 (52.58%), Postives = 151/194 (77.84%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLK+S+A +++++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEF 120
           L+G+HPYF V +N +LLLF PKP   +EGK+VK+  E+IHVIVLGF++AVITD DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNS 180
           K++ + GE  FV+R+HK H +K+GTM++  V+SF EE++HI+GSL+P +TG + WLEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 VEGSVSNNSKKKMR 195
            E   ++   K+ +
Sbjct: 181 EEALPTDRDHKRRK 194

[Close]

BLAST of HG10013960 vs. TAIR 10
Match: AT1G75670.2 (DNA-directed RNA polymerases )

HSP 1 Score: 223.0 bits (567), Expect = 2.4e-58
Identity = 102/194 (52.58%), Postives = 151/194 (77.84%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLK+S+A +++++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFSVTINAKLLLFSPKPNMLLEGKVVKLRQEAIHVIVLGFASAVITDEDIRDEF 120
           L+G+HPYF V +N +LLLF PKP   +EGK+VK+  E+IHVIVLGF++AVITD DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKSFYEEILHISGSLVPSHTGSIHWLEKNS 180
           K++ + GE  FV+R+HK H +K+GTM++  V+SF EE++HI+GSL+P +TG + WLEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 VEGSVSNNSKKKMR 195
            E   ++   K+ +
Sbjct: 181 EEALPTDRDHKRRK 194

The following BLAST results are available for this feature:

BLAST of HG10013960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466499.1	7.8e-107	91.81	PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >XP_01...	[more]
XP_038898978.1	3.0e-106	89.22	uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida]	[more]
XP_038889707.1	3.9e-106	89.13	uncharacterized protein LOC120079556 isoform X1 [Benincasa hispida] >XP_03888970...	[more]
XP_008466500.1	1.9e-105	91.81	PREDICTED: uncharacterized protein LOC103503892 isoform X2 [Cucumis melo]	[more]
XP_011652444.1	7.3e-105	89.66	uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737671.1 uncharact...	[more]

BLAST of HG10013960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O43036	5.2e-05	23.31	DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of HG10013960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E5I5	3.8e-107	91.81	uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3E6A0	3.8e-107	91.81	Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa...	[more]
A0A1S3CRF8	9.3e-106	91.81	uncharacterized protein LOC103503892 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LGG8	3.5e-105	89.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866520 PE=4 SV=1	[more]
A0A6J1D5Y9	3.3e-103	85.34	uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of HG10013960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75670.1	2.4e-58	52.58	DNA-directed RNA polymerases	[more]
AT1G75670.2	2.4e-58	52.58	DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 2..83 e-value: 2.8E-7 score: 32.3
None	No IPR available	GENE3D	2.40.50.1060		coord: 86..229 e-value: 8.4E-6 score: 28.0
None	No IPR available	PANTHER	PTHR12709:SF5	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43	coord: 1..205
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013960.1	HG10013960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity